Wall clock time and date at job start Tue Mar 31 2020 14:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 116.99995 * 2 1 4 4 C 1.38798 * 120.08153 * 0.02597 * 3 2 1 5 5 C 1.38006 * 119.92096 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.39759 * 359.97438 * 5 4 3 7 7 C 1.38428 * 119.91754 * 359.85072 * 6 5 4 8 8 C 1.38458 * 120.08037 * 180.02562 * 3 2 1 9 9 O 1.35846 * 121.80865 * 180.26727 * 7 6 5 10 10 C 1.42828 * 117.86397 * 342.89311 * 9 7 6 11 11 C 1.53413 * 108.36017 * 49.18109 * 10 9 7 12 12 C 1.50794 * 118.70065 * 179.81518 * 6 5 4 13 13 H 1.08999 * 109.39825 * 282.38189 * 12 6 5 14 14 N 1.46499 * 109.43684 * 42.27421 * 12 6 5 15 15 C 1.38829 * 119.99562 * 275.21840 * 14 12 6 16 16 C 1.39795 * 119.58729 * 0.02562 * 15 14 12 17 17 C 1.38588 * 119.49266 * 179.97438 * 16 15 14 18 18 C 1.38395 * 118.68193 * 0.02562 * 17 16 15 19 19 C 1.40553 * 119.14557 * 359.97438 * 18 17 16 20 20 C 1.41322 * 119.78225 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99858 * 0.02562 * 20 19 18 22 22 C 1.40025 * 119.99659 * 180.02562 * 20 19 18 23 23 N 1.30738 * 120.00449 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99430 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47479 * 90.00052 * 24 22 20 26 26 H 1.48503 * 109.46907 * 209.99722 * 24 22 20 27 27 H 1.48502 * 109.47393 * 329.99611 * 24 22 20 28 28 N 1.31955 * 119.58086 * 179.97438 * 15 14 12 29 29 H 1.08994 * 109.46810 * 299.99954 * 1 2 3 30 30 H 1.08997 * 109.47014 * 59.99536 * 1 2 3 31 31 H 1.08992 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.03700 * 0.04436 * 4 3 2 33 33 H 1.08006 * 119.79852 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.91206 * 359.97438 * 8 3 2 35 35 H 1.08997 * 109.68414 * 289.46922 * 10 9 7 36 36 H 1.08992 * 109.69003 * 168.89843 * 10 9 7 37 37 H 1.08998 * 109.69874 * 175.53502 * 11 10 9 38 38 H 1.08993 * 109.70067 * 54.93761 * 11 10 9 39 39 H 0.96996 * 120.00610 * 95.22256 * 14 12 6 40 40 H 1.08003 * 120.25274 * 359.95879 * 16 15 14 41 41 H 1.08005 * 120.66233 * 179.97438 * 17 16 15 42 42 H 1.08000 * 120.42574 * 179.72632 * 18 17 16 43 43 H 0.96999 * 120.00157 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2917 2.3760 0.0005 5 6 1.9216 3.6038 0.0000 6 6 3.3049 3.6821 -0.0005 7 6 4.0620 2.5232 0.0026 8 6 3.4285 1.2852 -0.0005 9 8 5.4201 2.5551 0.0076 10 6 6.0604 3.7772 -0.3619 11 6 5.4149 4.9202 0.4321 12 6 3.9532 5.0435 -0.0054 13 1 3.9096 5.4617 -1.0110 14 7 3.2401 5.9264 0.9210 15 6 2.1062 6.6064 0.4977 16 6 1.6523 6.4419 -0.8143 17 6 0.5199 7.1213 -1.2347 18 6 -0.1308 7.9481 -0.3355 19 6 0.3747 8.0719 0.9701 20 6 -0.2787 8.9129 1.8990 21 1 -1.1637 9.4575 1.6049 22 6 0.2213 9.0399 3.2007 23 7 1.2929 8.3810 3.5567 24 14 -0.6430 10.1510 4.4288 25 1 -1.6695 9.3707 5.1655 26 1 0.3505 10.6935 5.3900 27 1 -1.2969 11.2722 3.7072 28 7 1.4699 7.3991 1.3391 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2131 2.3217 0.0017 33 1 1.3327 4.5092 0.0000 34 1 4.0166 0.3794 -0.0005 35 1 5.9294 3.9521 -1.4297 36 1 7.1230 3.7208 -0.1262 37 1 5.9400 5.8529 0.2261 38 1 5.4619 4.6993 1.4983 39 1 3.5601 6.0359 1.8301 40 1 2.1802 5.7906 -1.4951 41 1 0.1529 7.0085 -2.2441 42 1 -1.0132 8.4943 -0.6345 43 1 1.6390 8.4688 4.4586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321329170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:40 Heat of formation + Delta-G solvation = -0.539460 kcal Electronic energy + Delta-G solvation = -27523.814386 eV Core-core repulsion = 23727.842178 eV Total energy + Delta-G solvation = -3795.972207 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81472 -39.25960 -38.37259 -36.43537 -35.58067 -33.50860 -31.90027 -30.48098 -30.29628 -29.78439 -28.39284 -27.22730 -25.52238 -24.69403 -23.18837 -22.38628 -21.47961 -20.55515 -19.77095 -18.40176 -17.42647 -16.92312 -16.36591 -16.17425 -15.84643 -15.69944 -15.30624 -14.87592 -14.81950 -14.54030 -14.20535 -13.60087 -13.45588 -13.25506 -13.14139 -12.81383 -12.57750 -12.39687 -12.23306 -12.03484 -11.81826 -11.43380 -11.30556 -11.06216 -11.02164 -10.95824 -10.70279 -10.50617 -10.44432 -10.23987 -9.95672 -9.56542 -8.97846 -8.31966 -7.96294 -7.84139 -7.56013 -6.58046 -6.37280 -4.51952 1.54184 1.61495 2.82703 2.95921 3.08988 3.11847 3.17579 3.24651 3.65097 3.84883 3.95236 4.19502 4.70062 4.75447 4.83842 4.96166 4.98163 5.12607 5.13794 5.17007 5.28516 5.36049 5.42557 5.53629 5.58818 5.77149 5.84029 6.00662 6.03843 6.09767 6.11656 6.36177 6.52692 6.64260 6.68788 6.76145 6.83215 6.86796 6.89211 7.20299 7.38126 7.53574 7.57420 7.75375 7.86610 8.11687 8.30147 8.62316 8.75025 9.06190 10.19186 10.35213 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003710 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.306939 B = 7544.736557 C = 8382.805662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.319 6.319 3 C 0.155 3.845 4 C -0.241 4.241 5 C -0.026 4.026 6 C -0.208 4.208 7 C 0.171 3.829 8 C -0.196 4.196 9 O -0.317 6.317 10 C 0.068 3.932 11 C -0.166 4.166 12 C 0.214 3.786 13 H 0.087 0.913 14 N -0.727 5.727 15 C 0.413 3.587 16 C -0.373 4.373 17 C -0.031 4.031 18 C -0.316 4.316 19 C 0.292 3.708 20 C -0.432 4.432 21 H 0.083 0.917 22 C 0.071 3.929 23 N -0.713 5.713 24 Si 0.904 3.096 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.262 1.262 28 N -0.530 5.530 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.097 0.903 32 H 0.126 0.874 33 H 0.153 0.847 34 H 0.133 0.867 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.397 0.603 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.227 -10.902 -5.184 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.109 3.891 4 C -0.260 4.260 5 C -0.044 4.044 6 C -0.211 4.211 7 C 0.125 3.875 8 C -0.215 4.215 9 O -0.231 6.231 10 C -0.007 4.007 11 C -0.204 4.204 12 C 0.106 3.894 13 H 0.105 0.895 14 N -0.362 5.362 15 C 0.173 3.827 16 C -0.399 4.399 17 C -0.055 4.055 18 C -0.339 4.339 19 C 0.166 3.834 20 C -0.464 4.464 21 H 0.101 0.899 22 C -0.154 4.154 23 N -0.335 5.335 24 Si 0.729 3.271 25 H -0.195 1.195 26 H -0.202 1.202 27 H -0.186 1.186 28 N -0.251 5.251 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.144 0.856 33 H 0.171 0.829 34 H 0.151 0.849 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.233 0.767 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.113 0.887 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.901 -11.224 -4.278 13.383 hybrid contribution -0.947 0.739 0.008 1.201 sum 4.954 -10.485 -4.270 12.357 Atomic orbital electron populations 1.23042 0.78308 1.03571 1.01752 1.86000 1.21418 1.27079 1.88777 1.18555 0.91406 0.84051 0.95055 1.21185 1.00058 0.92160 1.12564 1.21494 0.93821 0.98510 0.90583 1.20441 0.94768 0.94724 1.11130 1.18247 0.81954 0.92396 0.94925 1.19424 0.91304 0.96510 1.14282 1.85935 1.16554 1.36701 1.83869 1.22946 0.96926 0.81999 0.98871 1.22489 0.96061 0.99979 1.01899 1.19297 0.89020 0.86158 0.94922 0.89498 1.44171 1.28898 1.49067 1.14104 1.18511 0.86264 0.88967 0.88972 1.20642 1.06057 1.16272 0.96949 1.20598 0.93896 0.94153 0.96855 1.21540 1.05568 1.10084 0.96708 1.18197 0.87082 0.88604 0.89552 1.19607 1.10051 1.22085 0.94666 0.89868 1.26045 0.94565 0.95511 0.99270 1.70138 1.15868 1.29682 1.17795 0.86384 0.79831 0.80767 0.80153 1.19486 1.20218 1.18574 1.68232 1.11400 1.12788 1.32679 0.92478 0.92537 0.88448 0.85611 0.82930 0.84944 0.91533 0.87273 0.89171 0.89928 0.76749 0.88895 0.88927 0.88717 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.81 101.05 0.99 1.27 16 2 O -0.32 -4.39 10.50 -19.41 -0.20 -4.59 16 3 C 0.15 2.37 6.68 -39.29 -0.26 2.11 16 4 C -0.24 -3.86 9.04 -39.46 -0.36 -4.22 16 5 C -0.03 -0.47 8.58 -39.55 -0.34 -0.81 16 6 C -0.21 -3.44 5.54 -104.39 -0.58 -4.02 16 7 C 0.17 2.65 6.47 -39.21 -0.25 2.40 16 8 C -0.20 -3.00 9.87 -39.20 -0.39 -3.39 16 9 O -0.32 -4.38 10.27 -19.26 -0.20 -4.58 16 10 C 0.07 0.73 7.03 37.37 0.26 0.99 16 11 C -0.17 -2.04 5.67 -26.48 -0.15 -2.19 16 12 C 0.21 3.38 2.46 -69.00 -0.17 3.21 16 13 H 0.09 1.40 6.44 -51.93 -0.33 1.06 16 14 N -0.73 -14.14 5.01 -54.95 -0.28 -14.42 16 15 C 0.41 9.60 6.49 -155.32 -1.01 8.59 16 16 C -0.37 -8.15 6.93 -38.87 -0.27 -8.42 16 17 C -0.03 -0.68 10.15 -39.39 -0.40 -1.08 16 18 C -0.32 -7.75 9.83 -38.65 -0.38 -8.13 16 19 C 0.29 7.92 6.55 -85.00 -0.56 7.36 16 20 C -0.43 -11.49 9.14 -37.74 -0.34 -11.83 16 21 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 22 C 0.07 1.80 5.50 -17.35 -0.10 1.71 16 23 N -0.71 -18.65 11.46 55.55 0.64 -18.02 16 24 Si 0.90 18.49 29.56 -169.99 -5.02 13.46 16 25 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 26 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 27 H -0.26 -5.27 7.11 56.52 0.40 -4.86 16 28 N -0.53 -14.14 7.89 -10.32 -0.08 -14.23 16 29 H 0.06 0.56 7.66 -51.93 -0.40 0.16 16 30 H 0.06 0.52 7.66 -51.93 -0.40 0.13 16 31 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.13 1.81 6.31 -52.49 -0.33 1.48 16 33 H 0.15 3.11 4.15 -52.48 -0.22 2.89 16 34 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.06 8.11 -51.93 -0.42 0.63 16 39 H 0.40 7.86 8.70 -40.82 -0.36 7.50 16 40 H 0.09 1.85 5.76 -52.48 -0.30 1.55 16 41 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 42 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.27 6.44 8.29 -40.82 -0.34 6.10 16 LS Contribution 349.38 15.07 5.27 5.27 Total: -1.00 -30.02 349.38 -9.44 -39.46 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.26 Total: 14.10 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -4.30 Total: -16.46 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.28 Total: -46.66 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.40 Total: -9.17 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.02 -9.44 -39.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.921 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds