Wall clock time and date at job start Tue Mar 31 2020 14:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35895 * 116.99995 * 2 1 4 4 C 1.38798 * 120.08153 * 0.02597 * 3 2 1 5 5 C 1.38006 * 119.92096 * 180.02562 * 4 3 2 6 6 C 1.38550 * 120.39759 * 359.97438 * 5 4 3 7 7 C 1.38428 * 119.91754 * 359.85072 * 6 5 4 8 8 C 1.38458 * 120.08037 * 180.02562 * 3 2 1 9 9 O 1.35846 * 121.80865 * 180.26727 * 7 6 5 10 10 C 1.42828 * 117.86397 * 342.89311 * 9 7 6 11 11 C 1.53413 * 108.36017 * 49.18109 * 10 9 7 12 12 C 1.50794 * 118.70065 * 179.81518 * 6 5 4 13 13 H 1.08999 * 109.39825 * 282.38189 * 12 6 5 14 14 N 1.46499 * 109.43684 * 42.27421 * 12 6 5 15 15 C 1.38829 * 119.99562 * 275.21840 * 14 12 6 16 16 C 1.39795 * 119.58729 * 0.02562 * 15 14 12 17 17 C 1.38588 * 119.49266 * 179.97438 * 16 15 14 18 18 C 1.38395 * 118.68193 * 0.02562 * 17 16 15 19 19 C 1.40553 * 119.14557 * 359.97438 * 18 17 16 20 20 C 1.41322 * 119.78225 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99858 * 0.02562 * 20 19 18 22 22 C 1.40025 * 119.99659 * 180.02562 * 20 19 18 23 23 N 1.30738 * 120.00449 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99430 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47479 * 90.00052 * 24 22 20 26 26 H 1.48503 * 109.46907 * 209.99722 * 24 22 20 27 27 H 1.48502 * 109.47393 * 329.99611 * 24 22 20 28 28 N 1.31955 * 119.58086 * 179.97438 * 15 14 12 29 29 H 1.08994 * 109.46810 * 299.99954 * 1 2 3 30 30 H 1.08997 * 109.47014 * 59.99536 * 1 2 3 31 31 H 1.08992 * 109.47037 * 179.97438 * 1 2 3 32 32 H 1.07995 * 120.03700 * 0.04436 * 4 3 2 33 33 H 1.08006 * 119.79852 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.91206 * 359.97438 * 8 3 2 35 35 H 1.08997 * 109.68414 * 289.46922 * 10 9 7 36 36 H 1.08992 * 109.69003 * 168.89843 * 10 9 7 37 37 H 1.08998 * 109.69874 * 175.53502 * 11 10 9 38 38 H 1.08993 * 109.70067 * 54.93761 * 11 10 9 39 39 H 0.96996 * 120.00610 * 95.22256 * 14 12 6 40 40 H 1.08003 * 120.25274 * 359.95879 * 16 15 14 41 41 H 1.08005 * 120.66233 * 179.97438 * 17 16 15 42 42 H 1.08000 * 120.42574 * 179.72632 * 18 17 16 43 43 H 0.96999 * 120.00157 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2917 2.3760 0.0005 5 6 1.9216 3.6038 0.0000 6 6 3.3049 3.6821 -0.0005 7 6 4.0620 2.5232 0.0026 8 6 3.4285 1.2852 -0.0005 9 8 5.4201 2.5551 0.0076 10 6 6.0604 3.7772 -0.3619 11 6 5.4149 4.9202 0.4321 12 6 3.9532 5.0435 -0.0054 13 1 3.9096 5.4617 -1.0110 14 7 3.2401 5.9264 0.9210 15 6 2.1062 6.6064 0.4977 16 6 1.6523 6.4419 -0.8143 17 6 0.5199 7.1213 -1.2347 18 6 -0.1308 7.9481 -0.3355 19 6 0.3747 8.0719 0.9701 20 6 -0.2787 8.9129 1.8990 21 1 -1.1637 9.4575 1.6049 22 6 0.2213 9.0399 3.2007 23 7 1.2929 8.3810 3.5567 24 14 -0.6430 10.1510 4.4288 25 1 -1.6695 9.3707 5.1655 26 1 0.3505 10.6935 5.3900 27 1 -1.2969 11.2722 3.7072 28 7 1.4699 7.3991 1.3391 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2131 2.3217 0.0017 33 1 1.3327 4.5092 0.0000 34 1 4.0166 0.3794 -0.0005 35 1 5.9294 3.9521 -1.4297 36 1 7.1230 3.7208 -0.1262 37 1 5.9400 5.8529 0.2261 38 1 5.4619 4.6993 1.4983 39 1 3.5601 6.0359 1.8301 40 1 2.1802 5.7906 -1.4951 41 1 0.1529 7.0085 -2.2441 42 1 -1.0132 8.4943 -0.6345 43 1 1.6390 8.4688 4.4586 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321329170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:39 Heat of formation + Delta-G solvation = -18.152974 kcal Electronic energy + Delta-G solvation = -27524.578165 eV Core-core repulsion = 23727.842178 eV Total energy + Delta-G solvation = -3796.735987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99367 -40.38638 -40.04444 -37.70468 -36.93000 -35.30748 -33.35869 -32.19991 -31.56812 -31.00196 -30.04949 -28.16527 -27.34164 -25.90914 -24.35866 -23.73230 -23.19980 -22.21178 -20.98358 -19.53045 -19.24916 -18.22324 -17.75535 -17.39873 -16.98935 -16.82720 -16.62530 -16.50819 -16.13436 -16.03172 -15.47212 -15.20982 -14.93677 -14.72431 -14.29689 -14.06678 -13.97018 -13.79364 -13.61158 -13.32393 -12.98499 -12.89222 -12.73111 -12.61112 -12.51276 -12.24156 -12.17981 -11.94811 -11.72674 -11.62375 -11.40813 -11.30187 -10.71201 -9.83293 -9.52501 -9.44447 -9.03955 -8.32011 -8.23367 -6.47544 0.32198 0.35638 1.04755 1.34060 1.41108 1.53560 1.57617 1.94390 2.24281 2.43662 2.72715 2.81965 2.91776 3.62902 3.69995 3.80879 3.91754 4.07699 4.09266 4.13349 4.20798 4.35498 4.36830 4.39296 4.49148 4.58892 4.66536 4.69086 4.73702 4.82047 4.94783 4.95944 5.00147 5.00913 5.14078 5.16997 5.34838 5.36688 5.45889 5.55536 5.71444 5.96120 6.06407 6.21902 6.30193 6.44157 6.53813 6.82486 6.91524 7.20514 8.33742 8.50397 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003710 C = 0.003339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.306939 B = 7544.736557 C = 8382.805662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.326 6.326 3 C 0.157 3.843 4 C -0.248 4.248 5 C -0.047 4.047 6 C -0.218 4.218 7 C 0.175 3.825 8 C -0.203 4.203 9 O -0.320 6.320 10 C 0.066 3.934 11 C -0.159 4.159 12 C 0.210 3.790 13 H 0.086 0.914 14 N -0.722 5.722 15 C 0.403 3.597 16 C -0.361 4.361 17 C -0.029 4.029 18 C -0.342 4.342 19 C 0.261 3.739 20 C -0.471 4.471 21 H 0.085 0.915 22 C 0.028 3.972 23 N -0.750 5.750 24 Si 0.983 3.017 25 H -0.265 1.265 26 H -0.269 1.269 27 H -0.257 1.257 28 N -0.563 5.563 29 H 0.056 0.944 30 H 0.062 0.938 31 H 0.128 0.872 32 H 0.135 0.865 33 H 0.125 0.875 34 H 0.147 0.853 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.393 0.607 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.101 0.899 43 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -12.053 -5.685 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.239 6.239 3 C 0.112 3.888 4 C -0.267 4.267 5 C -0.065 4.065 6 C -0.220 4.220 7 C 0.128 3.872 8 C -0.222 4.222 9 O -0.234 6.234 10 C -0.008 4.008 11 C -0.197 4.197 12 C 0.104 3.896 13 H 0.104 0.896 14 N -0.355 5.355 15 C 0.162 3.838 16 C -0.387 4.387 17 C -0.054 4.054 18 C -0.365 4.365 19 C 0.134 3.866 20 C -0.503 4.503 21 H 0.104 0.896 22 C -0.194 4.194 23 N -0.372 5.372 24 Si 0.803 3.197 25 H -0.190 1.190 26 H -0.193 1.193 27 H -0.180 1.180 28 N -0.285 5.285 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.146 0.854 32 H 0.153 0.847 33 H 0.142 0.858 34 H 0.165 0.835 35 H 0.099 0.901 36 H 0.164 0.836 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.227 0.773 40 H 0.132 0.868 41 H 0.144 0.856 42 H 0.119 0.881 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.990 -12.408 -4.810 15.032 hybrid contribution -1.215 0.923 0.049 1.527 sum 5.774 -11.485 -4.762 13.709 Atomic orbital electron populations 1.23349 0.76373 1.05747 1.02026 1.86004 1.23399 1.26121 1.88394 1.18613 0.91631 0.84347 0.94254 1.21269 1.00727 0.91983 1.12694 1.21309 0.94428 0.98074 0.92733 1.20434 0.94378 0.95388 1.11836 1.18263 0.82786 0.91982 0.94132 1.19701 0.91568 0.97079 1.13855 1.85944 1.15380 1.38353 1.83694 1.23282 0.98216 0.79935 0.99386 1.22473 0.93637 1.01776 1.01805 1.19547 0.90772 0.85124 0.94141 0.89635 1.44319 1.27901 1.48797 1.14510 1.18858 0.86944 0.88615 0.89354 1.20865 1.05657 1.15446 0.96697 1.20973 0.93474 0.92903 0.98003 1.21666 1.06550 1.11677 0.96620 1.18637 0.87800 0.89286 0.90855 1.19940 1.10927 1.23370 0.96045 0.89647 1.26904 0.95084 0.96724 1.00649 1.70234 1.17306 1.31140 1.18527 0.85209 0.78593 0.78566 0.77305 1.18980 1.19329 1.18019 1.68196 1.12060 1.14096 1.34156 0.92562 0.91908 0.85389 0.84699 0.85771 0.83485 0.90131 0.83596 0.87415 0.90495 0.77250 0.86817 0.85583 0.88118 0.91391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.46 16 2 O -0.33 -8.42 10.50 -92.36 -0.97 -9.39 16 3 C 0.16 4.66 6.68 22.46 0.15 4.81 16 4 C -0.25 -7.91 9.04 22.35 0.20 -7.71 16 5 C -0.05 -1.70 8.58 22.29 0.19 -1.51 16 6 C -0.22 -7.07 5.54 -19.71 -0.11 -7.18 16 7 C 0.17 5.17 6.47 22.51 0.15 5.32 16 8 C -0.20 -5.90 9.87 22.52 0.22 -5.67 16 9 O -0.32 -8.02 10.27 -91.82 -0.94 -8.96 16 10 C 0.07 1.19 7.03 72.12 0.51 1.70 16 11 C -0.16 -3.57 5.67 30.76 0.17 -3.39 16 12 C 0.21 6.48 2.46 44.30 0.11 6.59 16 13 H 0.09 2.65 6.44 -2.39 -0.02 2.63 16 14 N -0.72 -28.45 5.01 -327.76 -1.64 -30.09 16 15 C 0.40 19.17 6.49 133.42 0.87 20.03 16 16 C -0.36 -15.80 6.93 22.73 0.16 -15.65 16 17 C -0.03 -1.31 10.15 22.39 0.23 -1.08 16 18 C -0.34 -17.27 9.83 22.87 0.22 -17.04 16 19 C 0.26 14.73 6.55 40.18 0.26 15.00 16 20 C -0.47 -26.05 9.14 23.46 0.21 -25.83 16 21 H 0.09 4.45 7.85 -2.91 -0.02 4.43 16 22 C 0.03 1.46 5.50 85.29 0.47 1.93 16 23 N -0.75 -40.51 11.46 21.84 0.25 -40.26 16 24 Si 0.98 38.65 29.56 68.60 2.03 40.68 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.27 -10.08 7.11 99.48 0.71 -9.38 16 27 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 28 N -0.56 -31.22 7.89 -186.58 -1.47 -32.69 16 29 H 0.06 1.04 7.66 -2.39 -0.02 1.02 16 30 H 0.06 1.07 7.66 -2.39 -0.02 1.05 16 31 H 0.13 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.14 3.88 6.31 -2.91 -0.02 3.87 16 33 H 0.12 5.19 4.15 -2.91 -0.01 5.18 16 34 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.15 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.08 1.84 8.11 -2.39 -0.02 1.82 16 39 H 0.39 15.95 8.70 -92.71 -0.81 15.15 16 40 H 0.11 4.44 5.76 -2.91 -0.02 4.42 16 41 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.28 13.50 8.29 -92.71 -0.77 12.73 16 Total: -1.00 -67.57 349.38 2.63 -64.94 By element: Atomic # 1 Polarization: 43.74 SS G_CDS: 0.26 Total: 44.00 kcal Atomic # 6 Polarization: -33.35 SS G_CDS: 5.13 Total: -28.22 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -2.86 Total: -103.04 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -1.91 Total: -18.35 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.68 kcal Total: -67.57 2.63 -64.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321329170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.785 kcal (2) G-P(sol) polarization free energy of solvation -67.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds