Wall clock time and date at job start Tue Mar 31 2020 14:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35980 * 117.00303 * 2 1 4 4 C 1.38722 * 120.07121 * 0.02562 * 3 2 1 5 5 C 1.37944 * 119.90724 * 180.02562 * 4 3 2 6 6 C 1.39127 * 120.29251 * 359.97438 * 5 4 3 7 7 C 1.38356 * 119.77962 * 359.84478 * 6 5 4 8 8 C 1.38504 * 119.88363 * 0.22520 * 7 6 5 9 9 C 1.50774 * 121.41085 * 180.25217 * 7 6 5 10 10 H 1.09006 * 109.40674 * 102.22675 * 9 7 6 11 11 N 1.46505 * 109.43777 * 222.11956 * 9 7 6 12 12 C 1.38817 * 119.99923 * 275.20898 * 11 9 7 13 13 C 1.39799 * 119.58630 * 359.97438 * 12 11 9 14 14 C 1.38603 * 119.48997 * 179.97438 * 13 12 11 15 15 C 1.38390 * 118.67974 * 0.04044 * 14 13 12 16 16 C 1.40555 * 119.14969 * 359.97438 * 15 14 13 17 17 C 1.41312 * 119.77971 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00526 * 359.97438 * 17 16 15 19 19 C 1.40029 * 119.99777 * 180.02562 * 17 16 15 20 20 N 1.30744 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00063 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46847 * 89.99520 * 21 19 17 23 23 H 1.48493 * 109.46887 * 209.99894 * 21 19 17 24 24 H 1.48496 * 109.46727 * 329.99692 * 21 19 17 25 25 N 1.31957 * 119.58584 * 179.97438 * 12 11 9 26 26 C 1.53066 * 109.67694 * 342.18074 * 9 7 6 27 27 C 1.53410 * 108.27404 * 48.29215 * 26 9 7 28 28 O 1.35947 * 118.43871 * 179.78015 * 6 5 4 29 29 H 1.09003 * 109.46954 * 59.99627 * 1 2 3 30 30 H 1.09000 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46831 * 300.00033 * 1 2 3 32 32 H 1.08004 * 120.04494 * 0.05092 * 4 3 2 33 33 H 1.07999 * 119.85421 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.85957 * 179.88287 * 8 7 6 35 35 H 0.97004 * 119.99529 * 95.20409 * 11 9 7 36 36 H 1.07998 * 120.25357 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.65427 * 180.02562 * 14 13 12 38 38 H 1.08005 * 120.41914 * 180.25022 * 15 14 13 39 39 H 0.97006 * 119.99819 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.70555 * 167.98428 * 26 9 7 41 41 H 1.08995 * 109.70656 * 288.59793 * 26 9 7 42 42 H 1.09002 * 109.68530 * 54.96417 * 27 26 9 43 43 H 1.09000 * 109.68544 * 175.52473 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2923 2.3760 0.0005 5 6 1.9222 3.6032 0.0000 6 6 3.3113 3.6791 -0.0005 7 6 4.0630 2.5175 0.0027 8 6 3.4296 1.2857 0.0018 9 6 5.5702 2.5568 0.0079 10 1 5.9345 2.3492 1.0141 11 7 6.0875 1.5446 -0.9163 12 6 6.2483 0.2332 -0.4903 13 6 5.9145 -0.1118 0.8226 14 6 6.0754 -1.4219 1.2457 15 6 6.5661 -2.3541 0.3483 16 6 6.8840 -1.9453 -0.9583 17 6 7.3855 -2.8862 -1.8857 18 1 7.5237 -3.9155 -1.5895 19 6 7.7042 -2.4838 -3.1885 20 7 7.5374 -1.2376 -3.5469 21 14 8.3665 -3.7278 -4.4147 22 1 7.2353 -4.3491 -5.1493 23 1 9.2657 -3.0430 -5.3777 24 1 9.1248 -4.7800 -3.6916 25 7 6.7145 -0.6720 -1.3297 26 6 6.0512 3.9417 -0.4322 27 6 5.2700 4.9969 0.3613 28 8 3.8926 4.9080 -0.0056 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2136 2.3217 0.0018 33 1 1.3343 4.5092 0.0008 34 1 4.0168 0.3792 0.0024 35 1 6.3175 1.7908 -1.8259 36 1 5.5341 0.6366 1.5020 37 1 5.8230 -1.7093 2.2557 38 1 6.6987 -3.3835 0.6470 39 1 7.7578 -0.9588 -4.4495 40 1 7.1171 4.0428 -0.2277 41 1 5.8670 4.0730 -1.4985 42 1 5.3782 4.8076 1.4293 43 1 5.6498 5.9906 0.1237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325710934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:37 Heat of formation + Delta-G solvation = 1.403670 kcal Electronic energy + Delta-G solvation = -27745.229236 eV Core-core repulsion = 23949.341289 eV Total energy + Delta-G solvation = -3795.887947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.78000 -39.08914 -38.31824 -36.28546 -35.67970 -33.46622 -31.86058 -30.61628 -30.15064 -29.73215 -28.36182 -27.05668 -25.45134 -24.70692 -23.23729 -22.38094 -21.42720 -20.52239 -19.79447 -17.77863 -17.58142 -17.31162 -16.68236 -16.20266 -15.64887 -15.35451 -15.07894 -14.84337 -14.75738 -14.44433 -14.05173 -13.59273 -13.43547 -13.18785 -13.11134 -12.91198 -12.63874 -12.43349 -12.11366 -11.98022 -11.74386 -11.44655 -11.30929 -11.12821 -10.98087 -10.92104 -10.64668 -10.43396 -10.37621 -10.13068 -9.91260 -9.53683 -8.94361 -8.65117 -7.90886 -7.53451 -7.50220 -6.54597 -6.32707 -4.46603 1.42994 1.67257 2.87055 3.11834 3.14977 3.23491 3.28794 3.34056 3.52603 3.82463 3.99040 4.19920 4.71263 4.74278 4.85112 4.89695 4.98256 5.11438 5.18266 5.19019 5.25288 5.34457 5.49949 5.51520 5.61390 5.74823 5.94657 6.01479 6.06909 6.09134 6.16263 6.28066 6.56120 6.57226 6.71246 6.78569 6.87870 6.90953 6.92603 7.24786 7.44874 7.58953 7.71710 7.80227 7.91780 8.15894 8.34110 8.65370 8.79787 9.10859 10.23850 10.39967 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.004061 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.716094 B = 6893.777261 C = 7864.652924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.313 6.313 3 C 0.090 3.910 4 C -0.177 4.177 5 C -0.122 4.122 6 C 0.096 3.904 7 C -0.134 4.134 8 C -0.097 4.097 9 C 0.209 3.791 10 H 0.091 0.909 11 N -0.727 5.727 12 C 0.412 3.588 13 C -0.370 4.370 14 C -0.030 4.030 15 C -0.315 4.315 16 C 0.293 3.707 17 C -0.432 4.432 18 H 0.083 0.917 19 C 0.071 3.929 20 N -0.714 5.714 21 Si 0.904 3.096 22 H -0.270 1.270 23 H -0.277 1.277 24 H -0.262 1.262 25 N -0.529 5.529 26 C -0.165 4.165 27 C 0.068 3.932 28 O -0.320 6.320 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.051 0.949 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.160 0.840 35 H 0.398 0.602 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.270 0.730 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.647 10.496 5.205 14.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.226 6.226 3 C 0.045 3.955 4 C -0.196 4.196 5 C -0.141 4.141 6 C 0.051 3.949 7 C -0.137 4.137 8 C -0.115 4.115 9 C 0.101 3.899 10 H 0.109 0.891 11 N -0.362 5.362 12 C 0.173 3.827 13 C -0.396 4.396 14 C -0.054 4.054 15 C -0.338 4.338 16 C 0.166 3.834 17 C -0.464 4.464 18 H 0.101 0.899 19 C -0.154 4.154 20 N -0.336 5.336 21 Si 0.729 3.271 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.186 1.186 25 N -0.250 5.250 26 C -0.203 4.203 27 C -0.008 4.008 28 O -0.235 6.235 29 H 0.069 0.931 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.146 0.854 33 H 0.146 0.854 34 H 0.177 0.823 35 H 0.233 0.767 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.441 10.886 4.296 14.430 hybrid contribution -0.065 -0.695 -0.003 0.698 sum -8.506 10.191 4.293 13.951 Atomic orbital electron populations 1.22985 0.79239 1.03626 1.00769 1.86167 1.20563 1.26711 1.89184 1.18929 0.92412 0.84062 1.00062 1.20955 0.99608 0.91633 1.07412 1.20198 0.91435 0.97608 1.04835 1.18571 0.91712 0.83564 1.01029 1.20359 0.97008 0.91724 1.04568 1.20982 0.91467 0.99640 0.99411 1.19376 0.87503 0.87642 0.95355 0.89102 1.44131 1.72767 1.05293 1.14052 1.18483 0.89896 0.85400 0.88960 1.20627 1.24790 0.97323 0.96854 1.20589 0.94918 0.92955 0.96918 1.21537 1.16818 0.98695 0.96704 1.18184 0.87355 0.88304 0.89532 1.19593 1.36336 0.95886 0.94627 0.89879 1.26048 0.94516 0.95550 0.99254 1.70148 1.29863 1.15914 1.17673 0.86385 0.79382 0.81210 0.80155 1.19494 1.20257 1.18585 1.68209 1.22900 1.01197 1.32691 1.22483 1.01553 0.94319 1.01955 1.22897 0.79105 1.00084 0.98722 1.85951 1.26194 1.26638 1.84682 0.93050 0.88513 0.93078 0.85374 0.85431 0.82292 0.76681 0.88985 0.88917 0.88705 0.91934 0.89108 0.89903 0.91759 0.87444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.81 101.05 0.99 1.32 16 2 O -0.31 -5.27 10.50 -19.68 -0.21 -5.47 16 3 C 0.09 1.54 6.68 -39.30 -0.26 1.28 16 4 C -0.18 -2.50 9.03 -39.51 -0.36 -2.85 16 5 C -0.12 -1.71 9.93 -39.36 -0.39 -2.10 16 6 C 0.10 1.47 6.47 -39.21 -0.25 1.22 16 7 C -0.13 -2.25 5.53 -104.44 -0.58 -2.83 16 8 C -0.10 -1.83 8.52 -39.38 -0.34 -2.17 16 9 C 0.21 3.36 2.46 -69.01 -0.17 3.19 16 10 H 0.09 1.48 6.44 -51.93 -0.33 1.15 16 11 N -0.73 -14.46 5.01 -54.96 -0.28 -14.74 16 12 C 0.41 9.86 6.48 -155.33 -1.01 8.85 16 13 C -0.37 -8.38 6.93 -38.86 -0.27 -8.65 16 14 C -0.03 -0.68 10.15 -39.39 -0.40 -1.08 16 15 C -0.31 -7.96 9.83 -38.65 -0.38 -8.34 16 16 C 0.29 8.13 6.55 -85.00 -0.56 7.58 16 17 C -0.43 -11.74 9.14 -37.74 -0.34 -12.08 16 18 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 19 C 0.07 1.84 5.50 -17.34 -0.10 1.74 16 20 N -0.71 -19.02 11.46 55.55 0.64 -18.38 16 21 Si 0.90 18.82 29.56 -169.99 -5.02 13.80 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 25 N -0.53 -14.47 7.89 -10.33 -0.08 -14.55 16 26 C -0.16 -2.04 5.67 -26.48 -0.15 -2.19 16 27 C 0.07 0.72 7.03 37.37 0.26 0.99 16 28 O -0.32 -4.38 10.27 -19.57 -0.20 -4.58 16 29 H 0.05 0.51 7.67 -51.93 -0.40 0.11 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 32 H 0.13 1.41 6.31 -52.48 -0.33 1.08 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.16 3.52 4.16 -52.48 -0.22 3.30 16 35 H 0.40 8.00 8.70 -40.82 -0.36 7.64 16 36 H 0.09 1.90 5.76 -52.49 -0.30 1.60 16 37 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 38 H 0.09 2.24 8.06 -52.48 -0.42 1.82 16 39 H 0.27 6.53 8.29 -40.82 -0.34 6.20 16 40 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.08 1.06 8.11 -51.93 -0.42 0.64 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.11 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 349.41 15.07 5.27 5.27 Total: -1.00 -31.23 349.41 -9.45 -40.68 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -5.26 Total: 14.12 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: -4.30 Total: -16.13 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.28 Total: -47.67 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.41 Total: -10.05 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -31.23 -9.45 -40.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.081 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds