Wall clock time and date at job start Tue Mar 31 2020 14:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35980 * 117.00303 * 2 1 4 4 C 1.38722 * 120.07121 * 0.02562 * 3 2 1 5 5 C 1.37944 * 119.90724 * 180.02562 * 4 3 2 6 6 C 1.39127 * 120.29251 * 359.97438 * 5 4 3 7 7 C 1.38356 * 119.77962 * 359.84478 * 6 5 4 8 8 C 1.38504 * 119.88363 * 0.22520 * 7 6 5 9 9 C 1.50774 * 121.41085 * 180.25217 * 7 6 5 10 10 H 1.09006 * 109.40674 * 102.22675 * 9 7 6 11 11 N 1.46505 * 109.43777 * 222.11956 * 9 7 6 12 12 C 1.38817 * 119.99923 * 275.20898 * 11 9 7 13 13 C 1.39799 * 119.58630 * 359.97438 * 12 11 9 14 14 C 1.38603 * 119.48997 * 179.97438 * 13 12 11 15 15 C 1.38390 * 118.67974 * 0.04044 * 14 13 12 16 16 C 1.40555 * 119.14969 * 359.97438 * 15 14 13 17 17 C 1.41312 * 119.77971 * 180.02562 * 16 15 14 18 18 H 1.07996 * 120.00526 * 359.97438 * 17 16 15 19 19 C 1.40029 * 119.99777 * 180.02562 * 17 16 15 20 20 N 1.30744 * 119.99762 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 120.00063 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46847 * 89.99520 * 21 19 17 23 23 H 1.48493 * 109.46887 * 209.99894 * 21 19 17 24 24 H 1.48496 * 109.46727 * 329.99692 * 21 19 17 25 25 N 1.31957 * 119.58584 * 179.97438 * 12 11 9 26 26 C 1.53066 * 109.67694 * 342.18074 * 9 7 6 27 27 C 1.53410 * 108.27404 * 48.29215 * 26 9 7 28 28 O 1.35947 * 118.43871 * 179.78015 * 6 5 4 29 29 H 1.09003 * 109.46954 * 59.99627 * 1 2 3 30 30 H 1.09000 * 109.47601 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46831 * 300.00033 * 1 2 3 32 32 H 1.08004 * 120.04494 * 0.05092 * 4 3 2 33 33 H 1.07999 * 119.85421 * 180.02562 * 5 4 3 34 34 H 1.08005 * 119.85957 * 179.88287 * 8 7 6 35 35 H 0.97004 * 119.99529 * 95.20409 * 11 9 7 36 36 H 1.07998 * 120.25357 * 359.97438 * 13 12 11 37 37 H 1.08000 * 120.65427 * 180.02562 * 14 13 12 38 38 H 1.08005 * 120.41914 * 180.25022 * 15 14 13 39 39 H 0.97006 * 119.99819 * 180.02562 * 20 19 17 40 40 H 1.09005 * 109.70555 * 167.98428 * 26 9 7 41 41 H 1.08995 * 109.70656 * 288.59793 * 26 9 7 42 42 H 1.09002 * 109.68530 * 54.96417 * 27 26 9 43 43 H 1.09000 * 109.68544 * 175.52473 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2923 2.3760 0.0005 5 6 1.9222 3.6032 0.0000 6 6 3.3113 3.6791 -0.0005 7 6 4.0630 2.5175 0.0027 8 6 3.4296 1.2857 0.0018 9 6 5.5702 2.5568 0.0079 10 1 5.9345 2.3492 1.0141 11 7 6.0875 1.5446 -0.9163 12 6 6.2483 0.2332 -0.4903 13 6 5.9145 -0.1118 0.8226 14 6 6.0754 -1.4219 1.2457 15 6 6.5661 -2.3541 0.3483 16 6 6.8840 -1.9453 -0.9583 17 6 7.3855 -2.8862 -1.8857 18 1 7.5237 -3.9155 -1.5895 19 6 7.7042 -2.4838 -3.1885 20 7 7.5374 -1.2376 -3.5469 21 14 8.3665 -3.7278 -4.4147 22 1 7.2353 -4.3491 -5.1493 23 1 9.2657 -3.0430 -5.3777 24 1 9.1248 -4.7800 -3.6916 25 7 6.7145 -0.6720 -1.3297 26 6 6.0512 3.9417 -0.4322 27 6 5.2700 4.9969 0.3613 28 8 3.8926 4.9080 -0.0056 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2136 2.3217 0.0018 33 1 1.3343 4.5092 0.0008 34 1 4.0168 0.3792 0.0024 35 1 6.3175 1.7908 -1.8259 36 1 5.5341 0.6366 1.5020 37 1 5.8230 -1.7093 2.2557 38 1 6.6987 -3.3835 0.6470 39 1 7.7578 -0.9588 -4.4495 40 1 7.1171 4.0428 -0.2277 41 1 5.8670 4.0730 -1.4985 42 1 5.3782 4.8076 1.4293 43 1 5.6498 5.9906 0.1237 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325710934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:36 Heat of formation + Delta-G solvation = -17.919066 kcal Electronic energy + Delta-G solvation = -27746.067133 eV Core-core repulsion = 23949.341289 eV Total energy + Delta-G solvation = -3796.725844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.95830 -40.27214 -40.04341 -37.55954 -37.03541 -35.31667 -33.37465 -32.22337 -31.56183 -30.97300 -30.01838 -28.04830 -27.32980 -25.94780 -24.37223 -23.74614 -23.18453 -22.23159 -21.00616 -19.34061 -18.83347 -18.72355 -17.95944 -17.72350 -16.88116 -16.59590 -16.51751 -16.31051 -16.12490 -15.98107 -15.28305 -15.18885 -14.96084 -14.71371 -14.18724 -14.16218 -13.98724 -13.86355 -13.61682 -13.30927 -12.97695 -12.86855 -12.73684 -12.61514 -12.54147 -12.33699 -12.14091 -11.91839 -11.73864 -11.55518 -11.33297 -11.20291 -10.71899 -9.89662 -9.84042 -9.46310 -8.69042 -8.34103 -8.23909 -6.47940 0.22730 0.46343 1.04244 1.33011 1.40373 1.53456 1.57563 2.24263 2.28932 2.45838 2.54813 2.83203 2.91242 3.63098 3.64635 3.79455 3.94013 4.04604 4.12494 4.15263 4.25397 4.35455 4.36351 4.39212 4.49556 4.60029 4.68056 4.69548 4.74741 4.91375 4.94316 4.95944 4.99031 5.00713 5.05348 5.12969 5.35085 5.35402 5.46839 5.61101 5.70124 5.94659 6.04714 6.20956 6.37566 6.52095 6.59201 6.81071 6.90212 7.19068 8.32586 8.50113 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012476 B = 0.004061 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.716094 B = 6893.777261 C = 7864.652924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.348 6.348 3 C 0.074 3.926 4 C -0.165 4.165 5 C -0.116 4.116 6 C 0.095 3.905 7 C -0.144 4.144 8 C -0.133 4.133 9 C 0.204 3.796 10 H 0.087 0.913 11 N -0.721 5.721 12 C 0.404 3.596 13 C -0.359 4.359 14 C -0.031 4.031 15 C -0.342 4.342 16 C 0.260 3.740 17 C -0.471 4.471 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.751 5.751 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.267 1.267 24 H -0.256 1.256 25 N -0.562 5.562 26 C -0.157 4.157 27 C 0.067 3.933 28 O -0.321 6.321 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.163 0.837 33 H 0.160 0.840 34 H 0.120 0.880 35 H 0.394 0.606 36 H 0.111 0.889 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.276 0.724 40 H 0.107 0.893 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.887 12.645 5.515 16.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.263 6.263 3 C 0.030 3.970 4 C -0.184 4.184 5 C -0.135 4.135 6 C 0.049 3.951 7 C -0.146 4.146 8 C -0.152 4.152 9 C 0.098 3.902 10 H 0.105 0.895 11 N -0.355 5.355 12 C 0.163 3.837 13 C -0.385 4.385 14 C -0.055 4.055 15 C -0.365 4.365 16 C 0.134 3.866 17 C -0.503 4.503 18 H 0.104 0.896 19 C -0.195 4.195 20 N -0.373 5.373 21 Si 0.805 3.195 22 H -0.190 1.190 23 H -0.192 1.192 24 H -0.179 1.179 25 N -0.284 5.284 26 C -0.195 4.195 27 C -0.008 4.008 28 O -0.236 6.236 29 H 0.083 0.917 30 H 0.129 0.871 31 H 0.090 0.910 32 H 0.181 0.819 33 H 0.177 0.823 34 H 0.137 0.863 35 H 0.228 0.772 36 H 0.129 0.871 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.086 0.914 40 H 0.125 0.875 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.701 13.081 4.640 16.934 hybrid contribution 0.181 -1.226 0.010 1.239 sum -9.520 11.855 4.650 15.900 Atomic orbital electron populations 1.23323 0.76510 1.05270 1.02412 1.86116 1.23578 1.27273 1.89347 1.19087 0.92124 0.85244 1.00568 1.21280 1.01144 0.90443 1.05513 1.20639 0.91208 0.98725 1.02906 1.18696 0.92373 0.83518 1.00485 1.20317 0.97111 0.91821 1.05385 1.20791 0.92568 0.98964 1.02837 1.19652 0.87554 0.88564 0.94418 0.89503 1.44271 1.72114 1.04635 1.14495 1.18831 0.89165 0.86425 0.89272 1.20840 1.23248 0.97681 0.96721 1.20966 0.93737 0.92737 0.98058 1.21667 1.18567 0.99612 0.96674 1.18647 0.88127 0.89036 0.90826 1.19936 1.38108 0.96180 0.96031 0.89608 1.26949 0.94244 0.97654 1.00656 1.70249 1.30708 1.17895 1.18462 0.85176 0.78720 0.78344 0.77225 1.18995 1.19171 1.17934 1.68183 1.24441 1.01713 1.34107 1.22470 1.02819 0.92327 1.01897 1.23203 0.77338 1.01154 0.99121 1.85958 1.27649 1.25420 1.84586 0.91651 0.87125 0.90966 0.81941 0.82255 0.86265 0.77168 0.87067 0.85738 0.88056 0.91369 0.87456 0.90430 0.90503 0.83758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.81 113.37 1.11 1.51 16 2 O -0.35 -11.85 10.50 -93.32 -0.98 -12.83 16 3 C 0.07 2.53 6.68 22.45 0.15 2.68 16 4 C -0.17 -4.25 9.03 22.32 0.20 -4.05 16 5 C -0.12 -2.90 9.93 22.41 0.22 -2.67 16 6 C 0.09 2.70 6.47 22.51 0.15 2.85 16 7 C -0.14 -4.80 5.53 -19.75 -0.11 -4.91 16 8 C -0.13 -5.17 8.52 22.40 0.19 -4.98 16 9 C 0.20 6.55 2.46 44.29 0.11 6.66 16 10 H 0.09 2.81 6.44 -2.38 -0.02 2.80 16 11 N -0.72 -29.70 5.01 -327.78 -1.64 -31.34 16 12 C 0.40 20.16 6.48 133.42 0.86 21.02 16 13 C -0.36 -16.76 6.93 22.73 0.16 -16.60 16 14 C -0.03 -1.46 10.15 22.39 0.23 -1.23 16 15 C -0.34 -18.12 9.83 22.87 0.22 -17.89 16 16 C 0.26 15.26 6.55 40.18 0.26 15.53 16 17 C -0.47 -26.81 9.14 23.46 0.21 -26.59 16 18 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 19 C 0.03 1.42 5.50 85.29 0.47 1.88 16 20 N -0.75 -41.57 11.46 21.84 0.25 -41.32 16 21 Si 0.99 39.56 29.56 68.60 2.03 41.58 16 22 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 23 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 25 N -0.56 -32.41 7.89 -186.60 -1.47 -33.88 16 26 C -0.16 -3.61 5.67 30.75 0.17 -3.44 16 27 C 0.07 1.20 7.03 72.12 0.51 1.71 16 28 O -0.32 -7.77 10.27 -92.95 -0.95 -8.73 16 29 H 0.06 1.15 7.67 -2.39 -0.02 1.13 16 30 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.07 1.17 7.66 -2.39 -0.02 1.15 16 32 H 0.16 2.95 6.31 -2.91 -0.02 2.93 16 33 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 34 H 0.12 5.58 4.16 -2.91 -0.01 5.57 16 35 H 0.39 16.54 8.70 -92.71 -0.81 15.73 16 36 H 0.11 4.67 5.76 -2.91 -0.02 4.65 16 37 H 0.12 4.96 8.06 -2.91 -0.02 4.93 16 38 H 0.10 5.03 8.06 -2.91 -0.02 5.00 16 39 H 0.28 13.80 8.29 -92.70 -0.77 13.03 16 40 H 0.11 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.08 1.89 8.11 -2.39 -0.02 1.87 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -72.86 349.41 2.61 -70.25 By element: Atomic # 1 Polarization: 44.56 SS G_CDS: 0.26 Total: 44.81 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 5.13 Total: -28.54 kcal Atomic # 7 Polarization: -103.68 SS G_CDS: -2.86 Total: -106.54 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -1.93 Total: -21.56 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.58 kcal Total: -72.86 2.61 -70.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325710934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.329 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds