Wall clock time and date at job start Tue Mar 31 2020 14:37:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99568 * 2 1 4 4 C 1.38923 * 119.68272 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.11124 * 179.74725 * 4 3 2 6 6 C 1.50704 * 120.75404 * 180.23279 * 5 4 3 7 7 N 1.46504 * 109.47277 * 90.00156 * 6 5 4 8 8 C 1.34771 * 120.00022 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00053 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00349 * 180.02562 * 8 7 6 11 11 H 1.09002 * 109.46507 * 300.00219 * 10 8 7 12 12 C 1.50704 * 109.47288 * 59.99673 * 10 8 7 13 13 H 1.08000 * 119.99354 * 33.94324 * 12 10 8 14 14 C 1.37874 * 119.99914 * 213.94654 * 12 10 8 15 15 N 1.31513 * 120.00400 * 6.38500 * 14 12 10 16 16 Si 1.86805 * 119.99575 * 186.38843 * 14 12 10 17 17 H 1.48504 * 109.47140 * 60.00106 * 16 14 12 18 18 H 1.48497 * 109.47003 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47162 * 299.99908 * 16 14 12 20 20 C 1.50695 * 109.47522 * 180.02562 * 10 8 7 21 21 C 1.38235 * 119.99663 * 293.84258 * 20 10 8 22 22 C 1.38240 * 120.00091 * 179.81199 * 21 20 10 23 23 C 1.38235 * 119.99930 * 0.39634 * 22 21 20 24 24 C 1.38237 * 119.99781 * 359.86015 * 23 22 21 25 25 C 1.38230 * 120.00526 * 114.12023 * 20 10 8 26 26 C 1.38824 * 118.48991 * 0.25172 * 5 4 3 27 27 C 1.38052 * 119.28591 * 0.02562 * 26 5 4 28 28 N 1.31965 * 120.83553 * 0.02562 * 27 26 5 29 29 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47096 * 299.99506 * 1 2 3 31 31 H 1.08995 * 109.47732 * 59.99583 * 1 2 3 32 32 H 1.08002 * 120.44524 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.46791 * 210.00006 * 6 5 4 34 34 H 1.09001 * 109.47529 * 329.99706 * 6 5 4 35 35 H 0.96993 * 119.99799 * 359.97438 * 7 6 5 36 36 H 0.97001 * 119.99867 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.00132 * 0.02562 * 21 20 10 38 38 H 1.08004 * 120.00222 * 180.23500 * 22 21 20 39 39 H 1.07993 * 120.00016 * 179.83566 * 23 22 21 40 40 H 1.08001 * 119.99852 * 179.97438 * 24 23 22 41 41 H 1.08006 * 119.99637 * 359.97438 * 25 20 10 42 42 H 1.07997 * 120.35861 * 180.02562 * 26 5 4 43 43 H 1.07994 * 119.57927 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0059 6 6 5.5511 2.6270 -0.0119 7 7 6.0328 2.6606 -1.3951 8 6 7.3530 2.7605 -1.6466 9 8 8.1424 2.8232 -0.7279 10 6 7.8485 2.7957 -3.0693 11 1 7.5517 1.8796 -3.5801 12 6 7.2516 3.9830 -3.7800 13 1 7.0644 4.8984 -3.2384 14 6 6.9445 3.9006 -5.1216 15 7 7.0538 2.7515 -5.7519 16 14 6.3731 5.4212 -6.0440 17 1 7.4284 6.4641 -5.9810 18 1 6.1094 5.0696 -7.4625 19 1 5.1279 5.9386 -5.4221 20 6 9.3512 2.9093 -3.0753 21 6 9.9596 4.0543 -2.5960 22 6 11.3382 4.1570 -2.5978 23 6 12.1080 3.1182 -3.0867 24 6 11.4994 1.9754 -3.5710 25 6 10.1210 1.8711 -3.5655 26 6 3.2504 3.6492 -0.0051 27 6 1.8770 3.5097 0.0014 28 7 1.3185 2.3141 0.0074 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.0229 0.3696 -0.0014 33 1 5.8481 3.5431 0.4986 34 1 5.9826 1.7682 0.5024 35 1 5.4015 2.6109 -2.1298 36 1 6.8381 2.6936 -6.6958 37 1 9.3581 4.8671 -2.2168 38 1 11.8137 5.0500 -2.2198 39 1 13.1849 3.1995 -3.0906 40 1 12.1009 1.1639 -3.9533 41 1 9.6454 0.9782 -3.9438 42 1 3.6992 4.6315 -0.0096 43 1 1.2517 4.3902 0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361328263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:05 Heat of formation + Delta-G solvation = -18.689252 kcal Electronic energy + Delta-G solvation = -26539.623764 eV Core-core repulsion = 22742.864523 eV Total energy + Delta-G solvation = -3796.759241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.73448 -39.18543 -38.16345 -37.63185 -34.80755 -33.66776 -32.04415 -31.09567 -30.79380 -29.95034 -27.98297 -27.33165 -26.00562 -23.83135 -23.48405 -21.84173 -21.59816 -20.78742 -19.36825 -18.05843 -17.19936 -16.76309 -16.22354 -16.11617 -15.91628 -15.85595 -15.24899 -14.76994 -14.55163 -14.29429 -14.16861 -13.90827 -13.67514 -13.44858 -12.90003 -12.62602 -12.50679 -12.34354 -12.24047 -12.10142 -11.73957 -11.67291 -11.43569 -11.33269 -11.05931 -11.04660 -10.42641 -10.30314 -10.09200 -9.85484 -9.75778 -9.48332 -8.80653 -8.61674 -8.59132 -8.42129 -7.96088 -7.63387 -6.29989 -4.35370 1.03672 1.14343 2.36009 2.38972 2.96738 3.19591 3.25617 3.27507 3.60302 3.67734 4.15580 4.22807 4.27167 4.60226 4.82090 4.91639 5.03565 5.07925 5.08553 5.15114 5.16160 5.43334 5.53257 5.71107 5.72051 5.74782 5.78918 5.83808 5.89272 6.18902 6.27555 6.31131 6.35520 6.48205 6.58231 6.85498 6.95765 7.07995 7.12777 7.18486 7.35639 7.42998 7.60231 7.74114 7.74166 7.93760 8.05129 8.31298 8.68252 9.17993 9.30581 10.78626 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.003347 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.638947 B = 8363.614718 C = 9457.347001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.316 3.684 4 C -0.172 4.172 5 C -0.018 4.018 6 C 0.160 3.840 7 N -0.725 5.725 8 C 0.530 3.470 9 O -0.566 6.566 10 C 0.050 3.950 11 H 0.093 0.907 12 C -0.516 4.516 13 H 0.062 0.938 14 C 0.076 3.924 15 N -0.879 5.879 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.274 1.274 20 C -0.012 4.012 21 C -0.085 4.085 22 C -0.134 4.134 23 C -0.148 4.148 24 C -0.132 4.132 25 C -0.120 4.120 26 C -0.189 4.189 27 C 0.136 3.864 28 N -0.541 5.541 29 H 0.094 0.906 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.143 0.857 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.268 0.732 37 H 0.111 0.889 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.141 0.859 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.162 -1.904 8.742 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.137 3.863 4 C -0.193 4.193 5 C -0.026 4.026 6 C 0.036 3.964 7 N -0.379 5.379 8 C 0.320 3.680 9 O -0.445 6.445 10 C 0.029 3.971 11 H 0.110 0.890 12 C -0.554 4.554 13 H 0.080 0.920 14 C -0.129 4.129 15 N -0.514 5.514 16 Si 0.724 3.276 17 H -0.199 1.199 18 H -0.211 1.211 19 H -0.200 1.200 20 C -0.013 4.013 21 C -0.103 4.103 22 C -0.153 4.153 23 C -0.167 4.167 24 C -0.150 4.150 25 C -0.138 4.138 26 C -0.210 4.210 27 C -0.019 4.019 28 N -0.265 5.265 29 H 0.112 0.888 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.161 0.839 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.078 0.922 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.159 0.841 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.424 -2.316 9.220 12.702 hybrid contribution -0.018 1.028 -1.056 1.474 sum -8.441 -1.288 8.164 11.814 Atomic orbital electron populations 1.22832 0.77392 1.02794 1.02368 1.86245 1.22780 1.24595 1.87943 1.19782 0.89261 0.84677 0.92564 1.21008 0.91925 0.99274 1.07057 1.20214 0.96322 0.92159 0.93955 1.20072 0.86998 1.02989 0.86314 1.45929 1.08675 1.76871 1.06409 1.21680 0.80763 0.72645 0.92947 1.90590 1.55227 1.50918 1.47779 1.18125 0.88761 1.02040 0.88201 0.88956 1.20622 1.42753 0.97555 0.94439 0.91988 1.24944 0.94240 0.96111 0.97588 1.69865 1.46872 1.23914 1.10789 0.86568 0.79271 0.83044 0.78746 1.19864 1.21092 1.19983 1.20051 0.96282 0.92202 0.92785 1.20831 0.93516 0.97707 0.98215 1.20963 0.94328 0.98350 1.01622 1.20804 0.98481 0.94885 1.02491 1.20907 0.94845 0.97702 1.01545 1.21006 0.93271 0.98817 1.00731 1.21990 0.94612 0.99766 1.04647 1.22367 0.92761 0.93549 0.93249 1.67285 1.41065 0.98891 1.19255 0.88758 0.92445 0.92305 0.83895 0.90595 0.90789 0.75694 0.92222 0.87078 0.87572 0.87694 0.87530 0.86961 0.84127 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.38 101.05 1.05 1.43 16 2 O -0.31 -3.90 10.48 -18.73 -0.20 -4.09 16 3 C 0.32 4.25 7.49 -17.12 -0.13 4.12 16 4 C -0.17 -2.25 9.75 -39.28 -0.38 -2.63 16 5 C -0.02 -0.24 5.28 -104.35 -0.55 -0.79 16 6 C 0.16 2.35 5.85 -5.19 -0.03 2.32 16 7 N -0.73 -12.98 5.45 -61.47 -0.33 -13.32 16 8 C 0.53 11.45 7.04 -10.99 -0.08 11.37 16 9 O -0.57 -13.37 15.42 5.55 0.09 -13.28 16 10 C 0.05 1.16 2.44 -94.08 -0.23 0.93 16 11 H 0.09 2.30 7.00 -51.93 -0.36 1.93 16 12 C -0.52 -12.67 7.46 -34.44 -0.26 -12.93 16 13 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 14 C 0.08 1.91 5.45 -17.82 -0.10 1.81 16 15 N -0.88 -22.97 12.78 55.43 0.71 -22.26 16 16 Si 0.90 19.82 29.54 -169.99 -5.02 14.80 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 19 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 20 C -0.01 -0.28 4.30 -104.63 -0.45 -0.73 16 21 C -0.08 -1.88 8.31 -39.58 -0.33 -2.21 16 22 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 23 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 24 C -0.13 -2.53 10.05 -39.58 -0.40 -2.93 16 25 C -0.12 -2.60 9.67 -39.58 -0.38 -2.99 16 26 C -0.19 -2.22 9.81 -39.43 -0.39 -2.61 16 27 C 0.14 1.53 11.18 -17.56 -0.20 1.34 16 28 N -0.54 -7.00 9.22 -13.33 -0.12 -7.13 16 29 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.51 8.10 -51.92 -0.42 0.09 16 31 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 32 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 33 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 34 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 35 H 0.41 7.27 8.35 -40.82 -0.34 6.92 16 36 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 37 H 0.11 2.49 7.89 -52.49 -0.41 2.07 16 38 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 39 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 41 H 0.11 2.35 7.95 -52.48 -0.42 1.93 16 42 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 43 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 LS Contribution 374.98 15.07 5.65 5.65 Total: -1.00 -29.63 374.98 -8.60 -38.23 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -5.72 Total: 12.05 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -3.64 Total: -10.65 kcal Atomic # 7 Polarization: -42.95 SS G_CDS: 0.25 Total: -42.70 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -0.11 Total: -17.38 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.63 -8.60 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361328263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.540 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds