Wall clock time and date at job start Tue Mar 31 2020 14:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35675 * 116.99568 * 2 1 4 4 C 1.38923 * 119.68272 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.11124 * 179.74725 * 4 3 2 6 6 C 1.50704 * 120.75404 * 180.23279 * 5 4 3 7 7 N 1.46504 * 109.47277 * 90.00156 * 6 5 4 8 8 C 1.34771 * 120.00022 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00053 * 359.97438 * 8 7 6 10 10 C 1.50697 * 120.00349 * 180.02562 * 8 7 6 11 11 H 1.09002 * 109.46507 * 300.00219 * 10 8 7 12 12 C 1.50704 * 109.47288 * 59.99673 * 10 8 7 13 13 H 1.08000 * 119.99354 * 33.94324 * 12 10 8 14 14 C 1.37874 * 119.99914 * 213.94654 * 12 10 8 15 15 N 1.31513 * 120.00400 * 6.38500 * 14 12 10 16 16 Si 1.86805 * 119.99575 * 186.38843 * 14 12 10 17 17 H 1.48504 * 109.47140 * 60.00106 * 16 14 12 18 18 H 1.48497 * 109.47003 * 179.97438 * 16 14 12 19 19 H 1.48493 * 109.47162 * 299.99908 * 16 14 12 20 20 C 1.50695 * 109.47522 * 180.02562 * 10 8 7 21 21 C 1.38235 * 119.99663 * 293.84258 * 20 10 8 22 22 C 1.38240 * 120.00091 * 179.81199 * 21 20 10 23 23 C 1.38235 * 119.99930 * 0.39634 * 22 21 20 24 24 C 1.38237 * 119.99781 * 359.86015 * 23 22 21 25 25 C 1.38230 * 120.00526 * 114.12023 * 20 10 8 26 26 C 1.38824 * 118.48991 * 0.25172 * 5 4 3 27 27 C 1.38052 * 119.28591 * 0.02562 * 26 5 4 28 28 N 1.31965 * 120.83553 * 0.02562 * 27 26 5 29 29 H 1.09004 * 109.47254 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.47096 * 299.99506 * 1 2 3 31 31 H 1.08995 * 109.47732 * 59.99583 * 1 2 3 32 32 H 1.08002 * 120.44524 * 0.02562 * 4 3 2 33 33 H 1.08997 * 109.46791 * 210.00006 * 6 5 4 34 34 H 1.09001 * 109.47529 * 329.99706 * 6 5 4 35 35 H 0.96993 * 119.99799 * 359.97438 * 7 6 5 36 36 H 0.97001 * 119.99867 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.00132 * 0.02562 * 21 20 10 38 38 H 1.08004 * 120.00222 * 180.23500 * 22 21 20 39 39 H 1.07993 * 120.00016 * 179.83566 * 23 22 21 40 40 H 1.08001 * 119.99852 * 179.97438 * 24 23 22 41 41 H 1.08006 * 119.99637 * 359.97438 * 25 20 10 42 42 H 1.07997 * 120.35861 * 180.02562 * 26 5 4 43 43 H 1.07994 * 119.57927 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0484 2.5132 -0.0059 6 6 5.5511 2.6270 -0.0119 7 7 6.0328 2.6606 -1.3951 8 6 7.3530 2.7605 -1.6466 9 8 8.1424 2.8232 -0.7279 10 6 7.8485 2.7957 -3.0693 11 1 7.5517 1.8796 -3.5801 12 6 7.2516 3.9830 -3.7800 13 1 7.0644 4.8984 -3.2384 14 6 6.9445 3.9006 -5.1216 15 7 7.0538 2.7515 -5.7519 16 14 6.3731 5.4212 -6.0440 17 1 7.4284 6.4641 -5.9810 18 1 6.1094 5.0696 -7.4625 19 1 5.1279 5.9386 -5.4221 20 6 9.3512 2.9093 -3.0753 21 6 9.9596 4.0543 -2.5960 22 6 11.3382 4.1570 -2.5978 23 6 12.1080 3.1182 -3.0867 24 6 11.4994 1.9754 -3.5710 25 6 10.1210 1.8711 -3.5655 26 6 3.2504 3.6492 -0.0051 27 6 1.8770 3.5097 0.0014 28 7 1.3185 2.3141 0.0074 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 4.0229 0.3696 -0.0014 33 1 5.8481 3.5431 0.4986 34 1 5.9826 1.7682 0.5024 35 1 5.4015 2.6109 -2.1298 36 1 6.8381 2.6936 -6.6958 37 1 9.3581 4.8671 -2.2168 38 1 11.8137 5.0500 -2.2198 39 1 13.1849 3.1995 -3.0906 40 1 12.1009 1.1639 -3.9533 41 1 9.6454 0.9782 -3.9438 42 1 3.6992 4.6315 -0.0096 43 1 1.2517 4.3902 0.0024 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361328263.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:04 Heat of formation + Delta-G solvation = -36.934390 kcal Electronic energy + Delta-G solvation = -26540.414933 eV Core-core repulsion = 22742.864523 eV Total energy + Delta-G solvation = -3797.550410 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71796 -40.81178 -39.43267 -38.90315 -36.13814 -35.50852 -33.34203 -32.81821 -31.73228 -31.52975 -29.46193 -28.34702 -27.31437 -25.59638 -24.45309 -23.22107 -22.93908 -22.27850 -21.00470 -19.13898 -18.63109 -18.14025 -17.67629 -17.55414 -17.06968 -16.94204 -16.68275 -16.30703 -15.98138 -15.63606 -15.51557 -15.15444 -15.08925 -14.56485 -14.36848 -14.10360 -13.95164 -13.78909 -13.58857 -13.30942 -13.25864 -12.98665 -12.84652 -12.76964 -12.59326 -12.20488 -12.16998 -11.96409 -11.66532 -11.28293 -11.02746 -10.73059 -10.68327 -10.35282 -9.95503 -9.55480 -9.53396 -9.26282 -8.21468 -6.31598 0.03187 0.17004 0.75873 0.80869 1.43102 1.45998 1.51813 1.93714 2.08740 2.42399 2.47023 2.87852 3.08941 3.27957 3.30173 3.54700 3.93270 4.07937 4.13052 4.22908 4.30934 4.37957 4.43527 4.44302 4.46280 4.53756 4.54131 4.70118 4.74808 4.77281 4.86589 4.88984 4.97694 5.13572 5.30051 5.37123 5.39628 5.45679 5.59037 5.64935 5.79141 5.83448 5.95217 6.21128 6.23792 6.40710 6.68521 6.76818 6.78784 7.35037 7.50795 8.86754 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012499 B = 0.003347 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2239.638947 B = 8363.614718 C = 9457.347001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.323 6.323 3 C 0.303 3.697 4 C -0.182 4.182 5 C -0.024 4.024 6 C 0.164 3.836 7 N -0.715 5.715 8 C 0.530 3.470 9 O -0.589 6.589 10 C 0.051 3.949 11 H 0.068 0.932 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.036 3.964 15 N -0.907 5.907 16 Si 0.950 3.050 17 H -0.277 1.277 18 H -0.285 1.285 19 H -0.263 1.263 20 C -0.041 4.041 21 C -0.110 4.110 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.130 4.130 25 C -0.145 4.145 26 C -0.189 4.189 27 C 0.138 3.862 28 N -0.548 5.548 29 H 0.121 0.879 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.408 0.592 36 H 0.267 0.733 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.139 0.861 41 H 0.106 0.894 42 H 0.156 0.844 43 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.989 -0.914 9.055 12.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.230 6.230 3 C 0.125 3.875 4 C -0.203 4.203 5 C -0.032 4.032 6 C 0.041 3.959 7 N -0.366 5.366 8 C 0.319 3.681 9 O -0.470 6.470 10 C 0.029 3.971 11 H 0.086 0.914 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.166 4.166 15 N -0.544 5.544 16 Si 0.776 3.224 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.042 4.042 21 C -0.128 4.128 22 C -0.153 4.153 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.163 4.163 26 C -0.210 4.210 27 C -0.017 4.017 28 N -0.273 5.273 29 H 0.139 0.861 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.162 0.838 33 H 0.098 0.902 34 H 0.092 0.908 35 H 0.243 0.757 36 H 0.076 0.924 37 H 0.116 0.884 38 H 0.154 0.846 39 H 0.165 0.835 40 H 0.157 0.843 41 H 0.124 0.876 42 H 0.174 0.826 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -8.290 -1.333 9.549 12.715 hybrid contribution -0.072 0.689 -1.096 1.297 sum -8.362 -0.644 8.453 11.907 Atomic orbital electron populations 1.23059 0.75729 1.04618 1.02316 1.86226 1.24506 1.24414 1.87855 1.19933 0.89459 0.85200 0.92925 1.21074 0.92239 0.99460 1.07510 1.20045 0.95161 0.92831 0.95135 1.20133 0.88359 1.03197 0.84191 1.45830 1.07453 1.75292 1.08028 1.21373 0.81792 0.72859 0.92056 1.90559 1.56092 1.52361 1.48028 1.18018 0.89657 1.00430 0.88956 0.91415 1.20717 1.42369 0.97576 0.94653 0.92563 1.25563 0.94554 0.98230 0.98241 1.69973 1.48192 1.25423 1.10825 0.85720 0.79052 0.80025 0.77615 1.20238 1.21075 1.18801 1.20142 0.96179 0.93425 0.94418 1.20877 0.95021 0.97261 0.99624 1.21345 0.93275 0.99896 1.00753 1.21283 1.00547 0.93710 1.00547 1.21305 0.93915 0.99048 1.00491 1.21157 0.94828 0.98589 1.01737 1.22210 0.94912 0.99946 1.03890 1.22933 0.92994 0.94042 0.91754 1.67362 1.41266 0.99272 1.19368 0.86097 0.92137 0.92629 0.83793 0.90185 0.90752 0.75663 0.92394 0.88371 0.84558 0.83530 0.84283 0.87563 0.82585 0.78960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.38 113.37 1.18 1.83 16 2 O -0.32 -8.02 10.48 -89.92 -0.94 -8.96 16 3 C 0.30 8.02 7.49 84.79 0.63 8.66 16 4 C -0.18 -4.77 9.75 22.47 0.22 -4.55 16 5 C -0.02 -0.61 5.28 -19.69 -0.10 -0.71 16 6 C 0.16 4.84 5.85 85.63 0.50 5.35 16 7 N -0.71 -26.15 5.45 -466.78 -2.54 -28.69 16 8 C 0.53 23.65 7.04 87.66 0.62 24.26 16 9 O -0.59 -28.53 15.42 -3.04 -0.05 -28.57 16 10 C 0.05 2.46 2.44 -13.03 -0.03 2.43 16 11 H 0.07 3.57 7.00 -2.39 -0.02 3.55 16 12 C -0.52 -25.91 7.46 25.60 0.19 -25.72 16 13 H 0.06 2.83 7.82 -2.91 -0.02 2.81 16 14 C 0.04 1.83 5.45 84.65 0.46 2.29 16 15 N -0.91 -48.54 12.78 21.45 0.27 -48.27 16 16 Si 0.95 40.72 29.54 68.60 2.03 42.74 16 17 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 20 C -0.04 -1.93 4.30 -19.87 -0.09 -2.02 16 21 C -0.11 -4.92 8.31 22.27 0.19 -4.73 16 22 C -0.13 -5.03 10.05 22.27 0.22 -4.81 16 23 C -0.14 -4.85 10.05 22.27 0.22 -4.63 16 24 C -0.13 -4.74 10.05 22.27 0.22 -4.52 16 25 C -0.14 -6.37 9.67 22.27 0.22 -6.15 16 26 C -0.19 -4.16 9.81 22.37 0.22 -3.95 16 27 C 0.14 2.84 11.18 84.63 0.95 3.79 16 28 N -0.55 -13.51 9.22 -308.95 -2.85 -16.36 16 29 H 0.12 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.06 1.00 8.10 -2.38 -0.02 0.98 16 31 H 0.05 0.99 8.11 -2.39 -0.02 0.98 16 32 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 33 H 0.08 2.32 8.10 -2.39 -0.02 2.30 16 34 H 0.07 2.20 8.10 -2.39 -0.02 2.18 16 35 H 0.41 14.92 8.35 -92.71 -0.77 14.14 16 36 H 0.27 13.71 8.31 -92.71 -0.77 12.94 16 37 H 0.10 4.52 7.89 -2.91 -0.02 4.49 16 38 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 39 H 0.15 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.14 4.09 8.06 -2.91 -0.02 4.06 16 41 H 0.11 4.63 7.95 -2.91 -0.02 4.61 16 42 H 0.16 2.92 8.06 -2.91 -0.02 2.89 16 43 H 0.19 2.56 8.06 -2.91 -0.02 2.53 16 Total: -1.00 -64.65 374.98 1.99 -62.66 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: 0.25 Total: 38.64 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: 5.82 Total: -13.19 kcal Atomic # 7 Polarization: -88.21 SS G_CDS: -5.12 Total: -93.32 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: -0.99 Total: -37.53 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 2.03 Total: 42.74 kcal Total: -64.65 1.99 -62.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361328263.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.726 kcal (2) G-P(sol) polarization free energy of solvation -64.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds