Wall clock time and date at job start Tue Mar 31 2020 14:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35681 * 116.99977 * 2 1 4 4 C 1.38912 * 119.68648 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11366 * 180.02562 * 4 3 2 6 6 C 1.50699 * 120.75966 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47128 * 270.01933 * 6 5 4 8 8 C 1.34775 * 119.99922 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00340 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99825 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.46923 * 60.00915 * 10 8 7 12 12 C 1.50696 * 109.47646 * 300.00289 * 10 8 7 13 13 H 1.08000 * 119.99785 * 333.99450 * 12 10 8 14 14 C 1.37871 * 120.00198 * 153.98676 * 12 10 8 15 15 N 1.31521 * 120.00213 * 173.51919 * 14 12 10 16 16 Si 1.86807 * 120.00142 * 353.51700 * 14 12 10 17 17 H 1.48499 * 109.46631 * 84.81734 * 16 14 12 18 18 H 1.48498 * 109.47113 * 204.81609 * 16 14 12 19 19 H 1.48499 * 109.46928 * 324.82169 * 16 14 12 20 20 C 1.50699 * 109.47031 * 180.02562 * 10 8 7 21 21 C 1.38239 * 120.00314 * 65.81490 * 20 10 8 22 22 C 1.38232 * 120.00092 * 179.78684 * 21 20 10 23 23 C 1.38231 * 119.99913 * 0.44645 * 22 21 20 24 24 C 1.38234 * 120.00281 * 359.80420 * 23 22 21 25 25 C 1.38236 * 119.99812 * 359.97438 * 24 23 22 26 26 C 1.38833 * 118.48183 * 0.02562 * 5 4 3 27 27 C 1.38049 * 119.29275 * 359.97438 * 26 5 4 28 28 N 1.31964 * 120.83328 * 359.97438 * 27 26 5 29 29 H 1.09006 * 109.47137 * 299.99683 * 1 2 3 30 30 H 1.08996 * 109.47775 * 59.99709 * 1 2 3 31 31 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.44730 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.46965 * 30.02419 * 6 5 4 34 34 H 1.09000 * 109.46845 * 150.02432 * 6 5 4 35 35 H 0.97001 * 119.99865 * 0.02562 * 7 6 5 36 36 H 0.97001 * 120.00047 * 179.97438 * 15 14 12 37 37 H 1.08000 * 119.99173 * 0.02562 * 21 20 10 38 38 H 1.08002 * 119.99494 * 180.27085 * 22 21 20 39 39 H 1.08001 * 119.99749 * 179.83156 * 23 22 21 40 40 H 1.07999 * 120.00203 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.99672 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.35250 * 179.72849 * 26 5 4 43 43 H 1.07994 * 119.57993 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4325 1.2740 -0.0005 5 6 4.0484 2.5132 0.0000 6 6 5.5511 2.6271 0.0000 7 7 6.0380 2.6629 1.3812 8 6 7.3594 2.7623 1.6275 9 8 8.1452 2.8226 0.7057 10 6 7.8604 2.7985 3.0483 11 1 7.5651 1.8831 3.5611 12 6 7.2670 3.9869 3.7602 13 1 6.9593 4.8554 3.1969 14 6 7.1167 3.9652 5.1305 15 7 6.7191 5.0461 5.7656 16 14 7.4777 2.4006 6.0852 17 1 8.9307 2.3262 6.3821 18 1 6.7122 2.4094 7.3576 19 1 7.0772 1.2226 5.2745 20 6 9.3630 2.9125 3.0484 21 6 9.9697 4.0543 2.5593 22 6 11.3479 4.1606 2.5634 23 6 12.1198 3.1214 3.0480 24 6 11.5135 1.9775 3.5324 25 6 10.1350 1.8730 3.5325 26 6 3.2503 3.6492 0.0016 27 6 1.8768 3.5098 0.0021 28 7 1.3184 2.3141 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 4.0228 0.3697 -0.0005 33 1 5.9805 1.7675 -0.5146 34 1 5.8460 3.5424 -0.5130 35 1 5.4096 2.6143 2.1185 36 1 6.6130 5.0307 6.7297 37 1 9.3666 4.8649 2.1775 38 1 11.8216 5.0546 2.1853 39 1 13.1967 3.2034 3.0487 40 1 12.1165 1.1657 3.9114 41 1 9.6613 0.9791 3.9105 42 1 3.6991 4.6315 0.0065 43 1 1.2516 4.3903 0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361328264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:08 Heat of formation + Delta-G solvation = -14.265339 kcal Electronic energy + Delta-G solvation = -26608.471681 eV Core-core repulsion = 22811.904275 eV Total energy + Delta-G solvation = -3796.567406 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.76487 -39.37960 -38.24026 -37.76061 -34.89773 -33.67055 -32.13465 -31.47582 -30.82041 -30.11489 -28.20314 -27.45314 -26.15978 -23.61279 -23.45821 -21.93714 -21.78282 -20.94037 -19.42098 -18.08342 -17.24062 -17.11326 -16.34190 -16.18411 -16.06564 -15.96820 -15.35412 -14.85398 -14.55103 -14.38491 -14.32196 -13.81251 -13.77357 -13.47656 -13.05263 -12.70230 -12.63034 -12.56665 -12.37778 -12.20119 -11.96878 -11.87454 -11.69321 -11.35663 -11.15546 -10.99818 -10.44866 -10.32026 -9.99256 -9.91038 -9.78377 -9.56331 -8.94395 -8.75485 -8.62860 -8.53886 -8.11249 -7.80977 -6.31632 -4.36153 1.00263 1.12003 2.16930 2.23549 2.93803 3.16613 3.22491 3.27175 3.49748 3.57422 4.05293 4.19506 4.22354 4.55701 4.65548 4.88451 5.00239 5.00328 5.06610 5.12556 5.13697 5.40946 5.50467 5.56406 5.61317 5.65215 5.70248 5.75443 5.81177 5.94731 6.08123 6.25159 6.29291 6.31676 6.32937 6.47873 6.75005 6.86357 6.96068 7.09890 7.18257 7.26348 7.27825 7.60857 7.72066 7.81464 8.13074 8.21830 8.67110 9.01380 9.26786 10.79258 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.003274 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.946310 B = 8550.158852 C = 9264.787011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.315 3.685 4 C -0.173 4.173 5 C -0.020 4.020 6 C 0.161 3.839 7 N -0.725 5.725 8 C 0.539 3.461 9 O -0.558 6.558 10 C 0.023 3.977 11 H 0.069 0.931 12 C -0.514 4.514 13 H 0.083 0.917 14 C 0.088 3.912 15 N -0.881 5.881 16 Si 0.863 3.137 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.263 1.263 20 C -0.029 4.029 21 C -0.070 4.070 22 C -0.130 4.130 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.136 4.136 26 C -0.187 4.187 27 C 0.137 3.863 28 N -0.540 5.540 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.408 0.592 36 H 0.269 0.731 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.142 0.858 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.000 -6.467 -9.330 13.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.136 3.864 4 C -0.194 4.194 5 C -0.028 4.028 6 C 0.037 3.963 7 N -0.378 5.378 8 C 0.328 3.672 9 O -0.436 6.436 10 C 0.001 3.999 11 H 0.087 0.913 12 C -0.552 4.552 13 H 0.101 0.899 14 C -0.117 4.117 15 N -0.517 5.517 16 Si 0.689 3.311 17 H -0.189 1.189 18 H -0.211 1.211 19 H -0.188 1.188 20 C -0.030 4.030 21 C -0.088 4.088 22 C -0.148 4.148 23 C -0.161 4.161 24 C -0.148 4.148 25 C -0.154 4.154 26 C -0.208 4.208 27 C -0.018 4.018 28 N -0.264 5.264 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.243 0.757 36 H 0.079 0.921 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.160 0.840 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.288 -6.680 -9.802 13.922 hybrid contribution 0.418 -0.500 1.127 1.302 sum -6.870 -7.180 -8.675 13.191 Atomic orbital electron populations 1.22833 0.77361 1.02790 1.02414 1.86238 1.22809 1.24611 1.87970 1.19780 0.89249 0.84701 0.92633 1.20990 0.91943 0.99205 1.07241 1.20194 0.96216 0.92201 0.94231 1.20086 0.87087 1.03182 0.85927 1.45893 1.08433 1.76704 1.06798 1.21076 0.80950 0.73037 0.92119 1.90607 1.55462 1.50458 1.47070 1.18508 0.89858 1.00820 0.90705 0.91345 1.20509 1.42056 1.00449 0.92139 0.89946 1.24930 0.93529 0.95946 0.97270 1.69868 1.45188 1.27394 1.09222 0.87017 0.79855 0.84327 0.79857 1.18938 1.21123 1.18812 1.20070 0.95911 0.92811 0.94216 1.20842 0.93604 0.97366 0.97000 1.21034 0.94273 0.98391 1.01102 1.20861 0.98732 0.94635 1.01829 1.20875 0.94570 0.97877 1.01432 1.20968 0.93830 0.98395 1.02223 1.22017 0.94623 0.99831 1.04317 1.22391 0.92789 0.93554 0.93068 1.67296 1.41059 0.98898 1.19146 0.92284 0.92412 0.88770 0.83956 0.90653 0.90339 0.75711 0.92122 0.86435 0.87114 0.87339 0.87291 0.87481 0.83984 0.82166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.79 10.48 -18.74 -0.20 -3.99 16 3 C 0.32 4.13 7.49 -17.12 -0.13 4.00 16 4 C -0.17 -2.18 9.75 -39.28 -0.38 -2.56 16 5 C -0.02 -0.26 5.28 -104.35 -0.55 -0.81 16 6 C 0.16 2.28 5.84 -5.20 -0.03 2.25 16 7 N -0.72 -12.49 5.45 -61.48 -0.33 -12.83 16 8 C 0.54 11.23 7.04 -10.98 -0.08 11.15 16 9 O -0.56 -12.70 15.41 5.56 0.09 -12.61 16 10 C 0.02 0.50 1.89 -94.08 -0.18 0.33 16 11 H 0.07 1.50 5.15 -51.93 -0.27 1.24 16 12 C -0.51 -12.93 8.02 -34.44 -0.28 -13.20 16 13 H 0.08 2.26 8.05 -52.49 -0.42 1.84 16 14 C 0.09 2.32 5.47 -17.82 -0.10 2.22 16 15 N -0.88 -24.75 13.96 55.43 0.77 -23.97 16 16 Si 0.86 19.86 26.74 -169.99 -4.55 15.32 16 17 H -0.26 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.26 -5.65 6.31 56.52 0.36 -5.30 16 20 C -0.03 -0.65 3.95 -104.62 -0.41 -1.06 16 21 C -0.07 -1.53 8.30 -39.58 -0.33 -1.86 16 22 C -0.13 -2.47 10.05 -39.59 -0.40 -2.86 16 23 C -0.14 -2.51 10.05 -39.59 -0.40 -2.91 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.14 -2.78 9.26 -39.58 -0.37 -3.15 16 26 C -0.19 -2.17 9.81 -39.43 -0.39 -2.56 16 27 C 0.14 1.53 11.18 -17.56 -0.20 1.34 16 28 N -0.54 -6.88 9.22 -13.33 -0.12 -7.00 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.14 1.64 8.06 -52.49 -0.42 1.22 16 33 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 34 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 35 H 0.41 6.89 8.35 -40.82 -0.34 6.55 16 36 H 0.27 7.14 8.31 -40.82 -0.34 6.81 16 37 H 0.12 2.64 7.90 -52.49 -0.41 2.23 16 38 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 40 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 41 H 0.11 2.02 7.96 -52.49 -0.42 1.61 16 42 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 43 H 0.16 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 370.18 15.07 5.58 5.58 Total: -1.00 -30.90 370.18 -8.00 -38.91 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -5.69 Total: 11.63 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: -3.56 Total: -11.03 kcal Atomic # 7 Polarization: -44.12 SS G_CDS: 0.32 Total: -43.80 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -0.11 Total: -16.60 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.55 Total: 15.32 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.90 -8.00 -38.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361328264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.643 kcal (2) G-P(sol) polarization free energy of solvation -30.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds