Wall clock time and date at job start Tue Mar 31 2020 14:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35681 * 116.99977 * 2 1 4 4 C 1.38912 * 119.68648 * 180.02562 * 3 2 1 5 5 C 1.38381 * 119.11366 * 180.02562 * 4 3 2 6 6 C 1.50699 * 120.75966 * 179.97438 * 5 4 3 7 7 N 1.46496 * 109.47128 * 270.01933 * 6 5 4 8 8 C 1.34775 * 119.99922 * 179.97438 * 7 6 5 9 9 O 1.21278 * 120.00340 * 0.02562 * 8 7 6 10 10 C 1.50704 * 119.99825 * 180.02562 * 8 7 6 11 11 H 1.09000 * 109.46923 * 60.00915 * 10 8 7 12 12 C 1.50696 * 109.47646 * 300.00289 * 10 8 7 13 13 H 1.08000 * 119.99785 * 333.99450 * 12 10 8 14 14 C 1.37871 * 120.00198 * 153.98676 * 12 10 8 15 15 N 1.31521 * 120.00213 * 173.51919 * 14 12 10 16 16 Si 1.86807 * 120.00142 * 353.51700 * 14 12 10 17 17 H 1.48499 * 109.46631 * 84.81734 * 16 14 12 18 18 H 1.48498 * 109.47113 * 204.81609 * 16 14 12 19 19 H 1.48499 * 109.46928 * 324.82169 * 16 14 12 20 20 C 1.50699 * 109.47031 * 180.02562 * 10 8 7 21 21 C 1.38239 * 120.00314 * 65.81490 * 20 10 8 22 22 C 1.38232 * 120.00092 * 179.78684 * 21 20 10 23 23 C 1.38231 * 119.99913 * 0.44645 * 22 21 20 24 24 C 1.38234 * 120.00281 * 359.80420 * 23 22 21 25 25 C 1.38236 * 119.99812 * 359.97438 * 24 23 22 26 26 C 1.38833 * 118.48183 * 0.02562 * 5 4 3 27 27 C 1.38049 * 119.29275 * 359.97438 * 26 5 4 28 28 N 1.31964 * 120.83328 * 359.97438 * 27 26 5 29 29 H 1.09006 * 109.47137 * 299.99683 * 1 2 3 30 30 H 1.08996 * 109.47775 * 59.99709 * 1 2 3 31 31 H 1.09002 * 109.47315 * 180.02562 * 1 2 3 32 32 H 1.08001 * 120.44730 * 359.97438 * 4 3 2 33 33 H 1.08999 * 109.46965 * 30.02419 * 6 5 4 34 34 H 1.09000 * 109.46845 * 150.02432 * 6 5 4 35 35 H 0.97001 * 119.99865 * 0.02562 * 7 6 5 36 36 H 0.97001 * 120.00047 * 179.97438 * 15 14 12 37 37 H 1.08000 * 119.99173 * 0.02562 * 21 20 10 38 38 H 1.08002 * 119.99494 * 180.27085 * 22 21 20 39 39 H 1.08001 * 119.99749 * 179.83156 * 23 22 21 40 40 H 1.07999 * 120.00203 * 180.02562 * 24 23 22 41 41 H 1.07996 * 119.99672 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.35250 * 179.72849 * 26 5 4 43 43 H 1.07994 * 119.57993 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4325 1.2740 -0.0005 5 6 4.0484 2.5132 0.0000 6 6 5.5511 2.6271 0.0000 7 7 6.0380 2.6629 1.3812 8 6 7.3594 2.7623 1.6275 9 8 8.1452 2.8226 0.7057 10 6 7.8604 2.7985 3.0483 11 1 7.5651 1.8831 3.5611 12 6 7.2670 3.9869 3.7602 13 1 6.9593 4.8554 3.1969 14 6 7.1167 3.9652 5.1305 15 7 6.7191 5.0461 5.7656 16 14 7.4777 2.4006 6.0852 17 1 8.9307 2.3262 6.3821 18 1 6.7122 2.4094 7.3576 19 1 7.0772 1.2226 5.2745 20 6 9.3630 2.9125 3.0484 21 6 9.9697 4.0543 2.5593 22 6 11.3479 4.1606 2.5634 23 6 12.1198 3.1214 3.0480 24 6 11.5135 1.9775 3.5324 25 6 10.1350 1.8730 3.5325 26 6 3.2503 3.6492 0.0016 27 6 1.8768 3.5098 0.0021 28 7 1.3184 2.3141 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 4.0228 0.3697 -0.0005 33 1 5.9805 1.7675 -0.5146 34 1 5.8460 3.5424 -0.5130 35 1 5.4096 2.6143 2.1185 36 1 6.6130 5.0307 6.7297 37 1 9.3666 4.8649 2.1775 38 1 11.8216 5.0546 2.1853 39 1 13.1967 3.2034 3.0487 40 1 12.1165 1.1657 3.9114 41 1 9.6613 0.9791 3.9105 42 1 3.6991 4.6315 0.0065 43 1 1.2516 4.3903 0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361328264.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:07 Heat of formation + Delta-G solvation = -34.757492 kcal Electronic energy + Delta-G solvation = -26609.360287 eV Core-core repulsion = 22811.904275 eV Total energy + Delta-G solvation = -3797.456012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73201 -40.94455 -39.51461 -38.92317 -36.18947 -35.51655 -33.50183 -33.13929 -31.73845 -31.61371 -29.70816 -28.41237 -27.38646 -25.34560 -24.45971 -23.37278 -22.98267 -22.34705 -21.00197 -19.13106 -19.07734 -18.16929 -17.82485 -17.64751 -17.08359 -16.96131 -16.69969 -16.40248 -15.99961 -15.70413 -15.45887 -15.18770 -15.07834 -14.80085 -14.41322 -14.26506 -14.12908 -13.88737 -13.65529 -13.58091 -13.39973 -13.01754 -12.95009 -12.73304 -12.59772 -12.18246 -12.03391 -11.99688 -11.63075 -11.41119 -11.07619 -10.84271 -10.73875 -10.47362 -10.01660 -9.62689 -9.54149 -9.36277 -8.34160 -6.41440 0.01898 0.16311 0.65659 0.72235 1.33855 1.38973 1.42855 1.83936 2.08065 2.31018 2.40595 2.84050 2.97244 3.18300 3.28848 3.53355 3.92214 4.07155 4.10497 4.12554 4.21561 4.27690 4.34670 4.40620 4.43692 4.44493 4.52252 4.62227 4.66040 4.73757 4.76042 4.82762 4.86461 4.92209 5.20217 5.29010 5.33460 5.38058 5.41262 5.53275 5.70804 5.75297 5.96152 6.20274 6.20544 6.31285 6.60893 6.63115 6.78251 7.24088 7.39847 8.80049 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014203 B = 0.003274 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.946310 B = 8550.158852 C = 9264.787011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.303 3.697 4 C -0.178 4.178 5 C -0.025 4.025 6 C 0.164 3.836 7 N -0.715 5.715 8 C 0.537 3.463 9 O -0.580 6.580 10 C 0.024 3.976 11 H 0.075 0.925 12 C -0.500 4.500 13 H 0.044 0.956 14 C 0.041 3.959 15 N -0.929 5.929 16 Si 0.914 3.086 17 H -0.264 1.264 18 H -0.286 1.286 19 H -0.237 1.237 20 C -0.057 4.057 21 C -0.101 4.101 22 C -0.134 4.134 23 C -0.137 4.137 24 C -0.127 4.127 25 C -0.153 4.153 26 C -0.191 4.191 27 C 0.138 3.862 28 N -0.548 5.548 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.122 0.878 32 H 0.149 0.851 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.409 0.591 36 H 0.269 0.731 37 H 0.092 0.908 38 H 0.134 0.866 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.120 0.880 42 H 0.152 0.848 43 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.162 -8.282 -9.417 13.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.124 3.876 4 C -0.199 4.199 5 C -0.033 4.033 6 C 0.042 3.958 7 N -0.367 5.367 8 C 0.326 3.674 9 O -0.461 6.461 10 C 0.002 3.998 11 H 0.092 0.908 12 C -0.538 4.538 13 H 0.062 0.938 14 C -0.160 4.160 15 N -0.567 5.567 16 Si 0.738 3.262 17 H -0.189 1.189 18 H -0.212 1.212 19 H -0.161 1.161 20 C -0.058 4.058 21 C -0.119 4.119 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.145 4.145 25 C -0.171 4.171 26 C -0.211 4.211 27 C -0.017 4.017 28 N -0.273 5.273 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.140 0.860 32 H 0.167 0.833 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.245 0.755 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.152 0.848 39 H 0.167 0.833 40 H 0.165 0.835 41 H 0.138 0.862 42 H 0.170 0.830 43 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.483 -8.519 -9.916 14.592 hybrid contribution 0.155 0.124 1.056 1.074 sum -6.328 -8.395 -8.860 13.749 Atomic orbital electron populations 1.23056 0.75766 1.04628 1.02289 1.86222 1.24451 1.24315 1.87858 1.19959 0.89539 0.85168 0.92905 1.21075 0.92146 0.99417 1.07297 1.20035 0.95141 0.92807 0.95289 1.20151 0.88312 1.03399 0.83981 1.45833 1.07310 1.75163 1.08376 1.20853 0.81922 0.73275 0.91387 1.90582 1.56309 1.51824 1.47363 1.18445 0.90594 0.99405 0.91333 0.90756 1.20463 1.41167 1.00150 0.91997 0.93782 1.25608 0.93551 0.98631 0.98179 1.69995 1.47586 1.29618 1.09481 0.86182 0.79512 0.81762 0.78704 1.18920 1.21209 1.16106 1.20102 0.95679 0.93983 0.96016 1.20842 0.95090 0.97109 0.98895 1.21363 0.93198 0.99994 1.00660 1.21344 1.00720 0.93543 0.99840 1.21356 0.93964 0.99044 1.00093 1.21243 0.95125 0.98353 1.02399 1.22202 0.95001 0.99981 1.03916 1.22891 0.92965 0.94061 0.91820 1.67364 1.41317 0.99270 1.19313 0.92664 0.92221 0.86030 0.83287 0.90025 0.90455 0.75533 0.92182 0.88997 0.84764 0.83285 0.83530 0.86199 0.83027 0.79206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.80 16 2 O -0.32 -7.59 10.48 -89.99 -0.94 -8.53 16 3 C 0.30 7.71 7.49 84.79 0.63 8.34 16 4 C -0.18 -4.40 9.75 22.47 0.22 -4.18 16 5 C -0.02 -0.61 5.28 -19.69 -0.10 -0.72 16 6 C 0.16 4.65 5.84 85.63 0.50 5.15 16 7 N -0.72 -24.93 5.45 -466.80 -2.54 -27.48 16 8 C 0.54 22.79 7.04 87.66 0.62 23.40 16 9 O -0.58 -26.91 15.41 -3.02 -0.05 -26.96 16 10 C 0.02 1.07 1.89 -13.03 -0.02 1.04 16 11 H 0.07 3.21 5.15 -2.39 -0.01 3.20 16 12 C -0.50 -26.01 8.02 25.60 0.21 -25.81 16 13 H 0.04 2.57 8.05 -2.91 -0.02 2.55 16 14 C 0.04 2.19 5.47 84.65 0.46 2.65 16 15 N -0.93 -53.82 13.96 21.45 0.30 -53.52 16 16 Si 0.91 40.59 26.74 68.60 1.83 42.43 16 17 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.29 -12.65 7.11 99.48 0.71 -11.94 16 19 H -0.24 -9.45 6.31 99.48 0.63 -8.82 16 20 C -0.06 -2.53 3.95 -19.86 -0.08 -2.61 16 21 C -0.10 -4.48 8.30 22.27 0.18 -4.30 16 22 C -0.13 -4.91 10.05 22.27 0.22 -4.68 16 23 C -0.14 -4.34 10.05 22.27 0.22 -4.12 16 24 C -0.13 -4.17 10.05 22.27 0.22 -3.94 16 25 C -0.15 -5.96 9.26 22.27 0.21 -5.75 16 26 C -0.19 -4.28 9.81 22.37 0.22 -4.06 16 27 C 0.14 2.90 11.18 84.63 0.95 3.84 16 28 N -0.55 -13.39 9.22 -308.94 -2.85 -16.24 16 29 H 0.05 0.95 8.10 -2.38 -0.02 0.94 16 30 H 0.06 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 33 H 0.08 2.23 8.10 -2.39 -0.02 2.21 16 34 H 0.08 2.22 8.10 -2.39 -0.02 2.20 16 35 H 0.41 13.99 8.35 -92.71 -0.77 13.22 16 36 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 37 H 0.09 4.40 7.90 -2.91 -0.02 4.37 16 38 H 0.13 4.12 8.06 -2.91 -0.02 4.09 16 39 H 0.15 3.52 8.06 -2.91 -0.02 3.49 16 40 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 41 H 0.12 4.23 7.96 -2.91 -0.02 4.21 16 42 H 0.15 3.07 8.06 -2.91 -0.02 3.04 16 43 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -68.39 370.18 1.77 -66.62 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: 0.18 Total: 37.63 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 5.84 Total: -13.94 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -5.09 Total: -97.24 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.99 Total: -35.49 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 1.83 Total: 42.43 kcal Total: -68.39 1.77 -66.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361328264.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.862 kcal (2) G-P(sol) polarization free energy of solvation -68.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds