Wall clock time and date at job start Tue Mar 31 2020 14:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35991 * 117.00212 * 2 1 4 4 C 1.39234 * 120.40188 * 180.02562 * 3 2 1 5 5 C 1.38336 * 118.44967 * 179.70865 * 4 3 2 6 6 C 1.39005 * 119.15963 * 0.26903 * 5 4 3 7 7 N 1.39589 * 119.63603 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00319 * 5.00037 * 7 6 5 9 9 C 1.34775 * 120.00022 * 185.00116 * 7 6 5 10 10 O 1.21288 * 120.00160 * 359.97438 * 9 7 6 11 11 C 1.50704 * 120.00479 * 179.97438 * 9 7 6 12 12 H 1.09003 * 109.46261 * 323.91537 * 11 9 7 13 13 C 1.50698 * 109.46978 * 83.91323 * 11 9 7 14 14 H 1.07994 * 120.00165 * 34.31023 * 13 11 9 15 15 C 1.37879 * 119.99733 * 214.31741 * 13 11 9 16 16 N 1.31515 * 119.99907 * 178.58802 * 15 13 11 17 17 Si 1.86802 * 120.00118 * 358.58719 * 15 13 11 18 18 H 1.48502 * 109.46974 * 84.72317 * 17 15 13 19 19 H 1.48499 * 109.46977 * 204.71825 * 17 15 13 20 20 H 1.48500 * 109.47013 * 324.72221 * 17 15 13 21 21 C 1.50696 * 109.47552 * 203.91392 * 11 9 7 22 22 C 1.38229 * 119.99983 * 296.14868 * 21 11 9 23 23 C 1.38240 * 120.00203 * 179.78501 * 22 21 11 24 24 C 1.38235 * 119.99351 * 0.44168 * 23 22 21 25 25 C 1.38229 * 120.00349 * 359.81317 * 24 23 22 26 26 C 1.38233 * 119.99997 * 359.97438 * 25 24 23 27 27 N 1.32307 * 120.72870 * 0.02562 * 6 5 4 28 28 C 1.31941 * 121.68914 * 359.97438 * 27 6 5 29 29 H 1.08998 * 109.46696 * 60.00043 * 1 2 3 30 30 H 1.09001 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47373 * 300.00255 * 1 2 3 32 32 H 1.07999 * 120.77717 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.42024 * 180.25502 * 5 4 3 34 34 H 1.09002 * 109.47134 * 90.00036 * 8 7 6 35 35 H 1.09001 * 109.47412 * 210.00189 * 8 7 6 36 36 H 1.09002 * 109.47095 * 330.00275 * 8 7 6 37 37 H 0.96996 * 120.00256 * 180.02562 * 16 15 13 38 38 H 1.08005 * 120.00184 * 359.97438 * 22 21 11 39 39 H 1.08000 * 120.00357 * 180.27083 * 23 22 21 40 40 H 1.08006 * 119.99623 * 179.82854 * 24 23 22 41 41 H 1.08008 * 119.99942 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.00114 * 180.02562 * 26 25 24 43 43 H 1.07997 * 119.61792 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4363 1.2942 -0.0005 5 6 4.0220 2.5475 -0.0067 6 6 3.2091 3.6750 -0.0064 7 7 3.7896 4.9445 -0.0121 8 6 5.2431 5.0848 -0.1288 9 6 3.0128 6.0411 0.0899 10 8 1.8094 5.9251 0.1861 11 6 3.6395 7.4117 0.0844 12 1 4.5929 7.3772 0.6116 13 6 3.8677 7.8539 -1.3380 14 1 3.1707 7.5666 -2.1113 15 6 4.9664 8.6254 -1.6522 16 7 5.1807 8.9881 -2.8981 17 14 6.1507 9.1554 -0.3083 18 1 7.1453 8.0782 -0.0719 19 1 6.8534 10.3944 -0.7282 20 1 5.3950 9.4148 0.9434 21 6 2.7199 8.3874 0.7724 22 6 1.4757 8.6606 0.2357 23 6 0.6303 9.5522 0.8692 24 6 1.0329 10.1775 2.0344 25 6 2.2792 9.9083 2.5682 26 6 3.1228 9.0134 1.9371 27 7 1.8912 3.5583 0.0002 28 6 1.2999 2.3788 0.0062 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0430 0.4008 -0.0005 33 1 5.0973 2.6485 -0.0114 34 1 5.5181 5.1542 -1.1813 35 1 5.5640 5.9877 0.3908 36 1 5.7289 4.2169 0.3172 37 1 5.9538 9.5305 -3.1192 38 1 1.1627 8.1751 -0.6769 39 1 -0.3436 9.7624 0.4523 40 1 0.3736 10.8763 2.5279 41 1 2.5936 10.3966 3.4789 42 1 4.0964 8.8027 2.3544 43 1 0.2214 2.3225 0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361406168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:26 Heat of formation + Delta-G solvation = 20.818334 kcal Electronic energy + Delta-G solvation = -27531.471970 eV Core-core repulsion = 23736.425906 eV Total energy + Delta-G solvation = -3795.046064 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.78561 -39.53417 -38.39596 -37.40376 -35.00598 -33.66649 -32.32852 -31.56437 -30.11939 -29.67603 -27.86039 -27.58406 -26.38295 -24.20789 -23.31181 -22.31592 -21.84910 -20.89885 -19.00640 -18.13329 -17.22183 -17.12783 -16.81033 -15.98868 -15.88495 -15.60471 -15.09946 -14.87546 -14.58376 -14.23883 -14.10742 -13.71344 -13.39402 -13.16452 -12.98156 -12.77254 -12.68234 -12.59020 -12.42430 -12.18992 -11.95067 -11.87704 -11.56232 -11.50505 -11.14919 -10.95296 -10.52820 -10.24499 -9.98334 -9.71603 -9.66016 -9.48915 -9.33635 -8.82813 -8.49910 -8.08712 -7.82088 -7.46914 -6.31772 -4.35978 1.23813 1.46913 2.14431 2.22297 3.07305 3.09783 3.22735 3.25132 3.28469 3.46463 4.12876 4.19535 4.54235 4.65845 4.73863 4.89948 5.00971 5.01916 5.03469 5.22874 5.32446 5.33950 5.51810 5.57892 5.59633 5.66636 5.75295 5.77751 5.86101 5.99998 6.03636 6.09985 6.24077 6.32898 6.38148 6.44087 6.72795 6.86965 7.00978 7.17668 7.24710 7.25402 7.28988 7.58216 7.63582 7.82611 8.20606 8.35388 8.70196 8.96587 9.24472 10.79347 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.004136 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.368493 B = 6768.261464 C = 8060.621485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.024 3.976 4 C -0.077 4.077 5 C -0.181 4.181 6 C 0.345 3.655 7 N -0.549 5.549 8 C 0.077 3.923 9 C 0.526 3.474 10 O -0.487 6.487 11 C 0.038 3.962 12 H 0.060 0.940 13 C -0.506 4.506 14 H 0.082 0.918 15 C 0.087 3.913 16 N -0.881 5.881 17 Si 0.854 3.146 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.247 1.247 21 C -0.041 4.041 22 C -0.065 4.065 23 C -0.133 4.133 24 C -0.140 4.140 25 C -0.134 4.134 26 C -0.130 4.130 27 N -0.442 5.442 28 C 0.057 3.943 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.055 0.945 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.269 0.731 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.220 -11.811 8.002 14.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C -0.024 4.024 4 C -0.103 4.103 5 C -0.204 4.204 6 C 0.114 3.886 7 N -0.275 5.275 8 C -0.065 4.065 9 C 0.316 3.684 10 O -0.357 6.357 11 C 0.017 3.983 12 H 0.077 0.923 13 C -0.544 4.544 14 H 0.100 0.900 15 C -0.118 4.118 16 N -0.517 5.517 17 Si 0.680 3.320 18 H -0.196 1.196 19 H -0.210 1.210 20 H -0.171 1.171 21 C -0.042 4.042 22 C -0.083 4.083 23 C -0.151 4.151 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.149 4.149 27 N -0.157 5.157 28 C -0.103 4.103 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.074 0.926 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.163 -11.062 7.908 13.961 hybrid contribution 1.126 -0.144 0.415 1.209 sum -2.037 -11.206 8.323 14.107 Atomic orbital electron populations 1.23035 0.78576 1.03771 1.01539 1.86025 1.21137 1.26230 1.89640 1.19912 0.93170 0.85595 1.03687 1.20594 0.91504 0.97893 1.00357 1.21459 1.01120 0.90838 1.07022 1.18628 0.88710 0.85816 0.95419 1.45779 1.08512 1.03035 1.70213 1.22042 0.77821 1.02726 1.03911 1.21562 0.87121 0.85889 0.73824 1.90681 1.14153 1.85932 1.44927 1.18400 0.94006 0.86886 0.99041 0.92256 1.20442 1.10699 1.33893 0.89334 0.90009 1.24948 0.97016 0.94612 0.95245 1.69848 1.28611 1.35698 1.17496 0.87219 0.81620 0.79200 0.84003 1.19584 1.20964 1.17055 1.20096 0.94559 0.97143 0.92391 1.20937 0.93039 0.95309 0.98985 1.21057 0.99517 0.98219 0.96295 1.20881 0.96587 1.01164 0.97227 1.20870 0.94816 0.99593 0.99929 1.21036 0.99202 0.98738 0.95881 1.67629 1.09584 1.25611 1.12870 1.22819 1.00295 0.86390 1.00797 0.92584 0.88353 0.92640 0.84104 0.83771 0.90525 0.89741 0.91212 0.92046 0.86013 0.87099 0.87365 0.87318 0.87151 0.82716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.82 101.05 0.99 1.21 16 2 O -0.32 -3.81 10.51 -19.71 -0.21 -4.02 16 3 C 0.02 0.34 6.71 -39.10 -0.26 0.07 16 4 C -0.08 -0.99 10.12 -39.18 -0.40 -1.38 16 5 C -0.18 -2.54 9.27 -39.26 -0.36 -2.90 16 6 C 0.34 6.29 7.32 -154.57 -1.13 5.15 16 7 N -0.55 -10.60 3.09 -122.73 -0.38 -10.98 16 8 C 0.08 1.21 9.74 59.85 0.58 1.79 16 9 C 0.53 11.84 6.73 -10.98 -0.07 11.77 16 10 O -0.49 -12.03 13.15 5.55 0.07 -11.96 16 11 C 0.04 0.87 1.20 -94.08 -0.11 0.75 16 12 H 0.06 1.25 3.34 -51.93 -0.17 1.08 16 13 C -0.51 -13.11 8.21 -34.44 -0.28 -13.39 16 14 H 0.08 2.41 8.06 -52.49 -0.42 1.99 16 15 C 0.09 2.26 5.47 -17.82 -0.10 2.17 16 16 N -0.88 -24.84 13.96 55.43 0.77 -24.06 16 17 Si 0.85 18.81 26.72 -169.99 -4.54 14.26 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.25 -5.16 4.75 56.52 0.27 -4.89 16 21 C -0.04 -0.91 4.43 -104.63 -0.46 -1.38 16 22 C -0.06 -1.43 7.99 -39.58 -0.32 -1.75 16 23 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 24 C -0.14 -2.46 10.05 -39.59 -0.40 -2.86 16 25 C -0.13 -2.40 10.05 -39.59 -0.40 -2.80 16 26 C -0.13 -2.62 8.52 -39.58 -0.34 -2.96 16 27 N -0.44 -8.64 7.89 -12.22 -0.10 -8.73 16 28 C 0.06 0.88 10.21 -17.39 -0.18 0.70 16 29 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 30 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 32 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 33 H 0.14 1.59 6.03 -52.49 -0.32 1.27 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.34 5.85 -51.93 -0.30 1.03 16 36 H 0.07 0.80 5.98 -51.93 -0.31 0.49 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.12 2.87 7.58 -52.48 -0.40 2.48 16 39 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 41 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 42 H 0.11 2.05 7.00 -52.49 -0.37 1.68 16 43 H 0.16 2.03 6.30 -52.49 -0.33 1.70 16 LS Contribution 352.48 15.07 5.31 5.31 Total: -1.00 -32.82 352.48 -7.93 -40.75 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.23 Total: 8.18 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -3.63 Total: -8.75 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.30 Total: -43.78 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.13 Total: -15.98 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -4.54 Total: 14.26 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.82 -7.93 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361406168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.566 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds