Wall clock time and date at job start Tue Mar 31 2020 14:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35991 * 117.00212 * 2 1 4 4 C 1.39234 * 120.40188 * 180.02562 * 3 2 1 5 5 C 1.38336 * 118.44967 * 179.70865 * 4 3 2 6 6 C 1.39005 * 119.15963 * 0.26903 * 5 4 3 7 7 N 1.39589 * 119.63603 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00319 * 5.00037 * 7 6 5 9 9 C 1.34775 * 120.00022 * 185.00116 * 7 6 5 10 10 O 1.21288 * 120.00160 * 359.97438 * 9 7 6 11 11 C 1.50704 * 120.00479 * 179.97438 * 9 7 6 12 12 H 1.09003 * 109.46261 * 323.91537 * 11 9 7 13 13 C 1.50698 * 109.46978 * 83.91323 * 11 9 7 14 14 H 1.07994 * 120.00165 * 34.31023 * 13 11 9 15 15 C 1.37879 * 119.99733 * 214.31741 * 13 11 9 16 16 N 1.31515 * 119.99907 * 178.58802 * 15 13 11 17 17 Si 1.86802 * 120.00118 * 358.58719 * 15 13 11 18 18 H 1.48502 * 109.46974 * 84.72317 * 17 15 13 19 19 H 1.48499 * 109.46977 * 204.71825 * 17 15 13 20 20 H 1.48500 * 109.47013 * 324.72221 * 17 15 13 21 21 C 1.50696 * 109.47552 * 203.91392 * 11 9 7 22 22 C 1.38229 * 119.99983 * 296.14868 * 21 11 9 23 23 C 1.38240 * 120.00203 * 179.78501 * 22 21 11 24 24 C 1.38235 * 119.99351 * 0.44168 * 23 22 21 25 25 C 1.38229 * 120.00349 * 359.81317 * 24 23 22 26 26 C 1.38233 * 119.99997 * 359.97438 * 25 24 23 27 27 N 1.32307 * 120.72870 * 0.02562 * 6 5 4 28 28 C 1.31941 * 121.68914 * 359.97438 * 27 6 5 29 29 H 1.08998 * 109.46696 * 60.00043 * 1 2 3 30 30 H 1.09001 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47373 * 300.00255 * 1 2 3 32 32 H 1.07999 * 120.77717 * 359.97438 * 4 3 2 33 33 H 1.07999 * 120.42024 * 180.25502 * 5 4 3 34 34 H 1.09002 * 109.47134 * 90.00036 * 8 7 6 35 35 H 1.09001 * 109.47412 * 210.00189 * 8 7 6 36 36 H 1.09002 * 109.47095 * 330.00275 * 8 7 6 37 37 H 0.96996 * 120.00256 * 180.02562 * 16 15 13 38 38 H 1.08005 * 120.00184 * 359.97438 * 22 21 11 39 39 H 1.08000 * 120.00357 * 180.27083 * 23 22 21 40 40 H 1.08006 * 119.99623 * 179.82854 * 24 23 22 41 41 H 1.08008 * 119.99942 * 180.02562 * 25 24 23 42 42 H 1.07996 * 120.00114 * 180.02562 * 26 25 24 43 43 H 1.07997 * 119.61792 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4363 1.2942 -0.0005 5 6 4.0220 2.5475 -0.0067 6 6 3.2091 3.6750 -0.0064 7 7 3.7896 4.9445 -0.0121 8 6 5.2431 5.0848 -0.1288 9 6 3.0128 6.0411 0.0899 10 8 1.8094 5.9251 0.1861 11 6 3.6395 7.4117 0.0844 12 1 4.5929 7.3772 0.6116 13 6 3.8677 7.8539 -1.3380 14 1 3.1707 7.5666 -2.1113 15 6 4.9664 8.6254 -1.6522 16 7 5.1807 8.9881 -2.8981 17 14 6.1507 9.1554 -0.3083 18 1 7.1453 8.0782 -0.0719 19 1 6.8534 10.3944 -0.7282 20 1 5.3950 9.4148 0.9434 21 6 2.7199 8.3874 0.7724 22 6 1.4757 8.6606 0.2357 23 6 0.6303 9.5522 0.8692 24 6 1.0329 10.1775 2.0344 25 6 2.2792 9.9083 2.5682 26 6 3.1228 9.0134 1.9371 27 7 1.8912 3.5583 0.0002 28 6 1.2999 2.3788 0.0062 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 4.0430 0.4008 -0.0005 33 1 5.0973 2.6485 -0.0114 34 1 5.5181 5.1542 -1.1813 35 1 5.5640 5.9877 0.3908 36 1 5.7289 4.2169 0.3172 37 1 5.9538 9.5305 -3.1192 38 1 1.1627 8.1751 -0.6769 39 1 -0.3436 9.7624 0.4523 40 1 0.3736 10.8763 2.5279 41 1 2.5936 10.3966 3.4789 42 1 4.0964 8.8027 2.3544 43 1 0.2214 2.3225 0.0119 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361406168.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:26 Heat of formation + Delta-G solvation = 0.517122 kcal Electronic energy + Delta-G solvation = -27532.352296 eV Core-core repulsion = 23736.425906 eV Total energy + Delta-G solvation = -3795.926390 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05833 -40.92236 -39.73610 -38.70631 -36.48420 -35.48595 -33.50178 -33.35902 -31.63488 -30.89105 -29.37082 -28.63775 -27.59195 -25.87348 -24.69829 -23.57851 -23.34799 -22.32969 -20.52016 -19.16987 -19.11477 -18.40011 -18.29537 -17.46408 -17.03308 -16.90400 -16.53827 -16.14354 -16.08358 -15.71267 -15.43882 -14.96225 -14.79968 -14.56196 -14.44976 -14.23200 -14.10791 -13.94515 -13.85736 -13.55960 -13.39410 -12.97472 -12.92082 -12.68485 -12.60196 -12.45797 -12.13562 -11.89998 -11.65709 -11.50814 -10.97222 -10.89597 -10.75583 -10.60142 -9.96305 -9.61672 -9.38319 -8.73086 -8.33939 -6.44615 0.07768 0.31960 0.62150 0.69411 1.34875 1.43956 1.52995 1.77000 1.91445 2.31585 2.33887 2.87044 2.96451 3.13561 3.43174 3.67443 3.82282 4.00524 4.03524 4.18003 4.20811 4.23635 4.32377 4.35134 4.37998 4.40458 4.42843 4.58861 4.66845 4.72127 4.80687 4.82083 4.88164 4.92632 4.95663 5.19091 5.26739 5.31914 5.37991 5.68080 5.72392 5.75830 5.94974 6.08643 6.22442 6.27284 6.32739 6.57782 7.06480 7.19988 7.38162 8.81443 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013404 B = 0.004136 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.368493 B = 6768.261464 C = 8060.621485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.319 6.319 3 C 0.039 3.961 4 C -0.074 4.074 5 C -0.162 4.162 6 C 0.303 3.697 7 N -0.554 5.554 8 C 0.070 3.930 9 C 0.517 3.483 10 O -0.525 6.525 11 C 0.045 3.955 12 H 0.079 0.921 13 C -0.502 4.502 14 H 0.019 0.981 15 C 0.036 3.964 16 N -0.936 5.936 17 Si 0.916 3.084 18 H -0.236 1.236 19 H -0.292 1.292 20 H -0.226 1.226 21 C -0.069 4.069 22 C -0.097 4.097 23 C -0.139 4.139 24 C -0.133 4.133 25 C -0.127 4.127 26 C -0.142 4.142 27 N -0.492 5.492 28 C 0.034 3.966 29 H 0.057 0.943 30 H 0.128 0.872 31 H 0.060 0.940 32 H 0.180 0.820 33 H 0.179 0.821 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.118 0.882 37 H 0.271 0.729 38 H 0.082 0.918 39 H 0.130 0.870 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.129 0.871 43 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.636 -12.906 11.429 17.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.232 6.232 3 C -0.010 4.010 4 C -0.100 4.100 5 C -0.185 4.185 6 C 0.074 3.926 7 N -0.280 5.280 8 C -0.071 4.071 9 C 0.307 3.693 10 O -0.398 6.398 11 C 0.024 3.976 12 H 0.097 0.903 13 C -0.539 4.539 14 H 0.037 0.963 15 C -0.164 4.164 16 N -0.573 5.573 17 Si 0.737 3.263 18 H -0.159 1.159 19 H -0.219 1.219 20 H -0.149 1.149 21 C -0.070 4.070 22 C -0.116 4.116 23 C -0.157 4.157 24 C -0.151 4.151 25 C -0.145 4.145 26 C -0.160 4.160 27 N -0.208 5.208 28 C -0.124 4.124 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.079 0.921 32 H 0.197 0.803 33 H 0.196 0.804 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.136 0.864 37 H 0.080 0.920 38 H 0.100 0.900 39 H 0.148 0.852 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.147 0.853 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.582 -12.231 11.344 16.757 hybrid contribution 0.418 0.024 -0.707 0.822 sum -1.164 -12.207 10.637 16.233 Atomic orbital electron populations 1.23352 0.76640 1.05898 1.01942 1.86038 1.23127 1.25000 1.89040 1.20043 0.93835 0.85609 1.01490 1.21063 0.91408 0.98720 0.98823 1.21772 1.02369 0.89696 1.04656 1.18975 0.89111 0.86282 0.98234 1.45737 1.09562 1.02970 1.69747 1.22269 0.76169 1.04968 1.03655 1.21568 0.86994 0.86899 0.73835 1.90639 1.15577 1.86683 1.46869 1.18270 0.95147 0.87372 0.96826 0.90326 1.20286 1.09480 1.34046 0.90111 0.96270 1.25815 0.98779 0.94145 0.97693 1.70016 1.29780 1.37252 1.20265 0.86236 0.79630 0.79247 0.81176 1.15906 1.21850 1.14882 1.20153 0.94756 0.97969 0.94124 1.20830 0.94608 0.97354 0.98772 1.21336 0.99868 0.97450 0.97025 1.21355 0.97139 1.00593 0.95976 1.21376 0.94225 0.98189 1.00701 1.21318 1.00564 0.98984 0.95164 1.67445 1.11179 1.27946 1.14202 1.23016 1.01128 0.86291 1.01975 0.92399 0.85367 0.92096 0.80268 0.80350 0.91735 0.89952 0.86359 0.91973 0.89954 0.85215 0.83191 0.83116 0.85285 0.81662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.82 113.37 1.11 1.35 16 2 O -0.32 -6.95 10.51 -93.45 -0.98 -7.93 16 3 C 0.04 1.01 6.71 22.58 0.15 1.16 16 4 C -0.07 -1.68 10.12 22.53 0.23 -1.45 16 5 C -0.16 -4.20 9.27 22.48 0.21 -4.00 16 6 C 0.30 11.21 7.32 132.86 0.97 12.18 16 7 N -0.55 -21.95 3.09 -660.58 -2.04 -24.00 16 8 C 0.07 2.13 9.74 127.77 1.24 3.38 16 9 C 0.52 24.68 6.73 87.66 0.59 25.27 16 10 O -0.52 -28.05 13.15 -3.05 -0.04 -28.09 16 11 C 0.05 2.13 1.20 -13.03 -0.02 2.11 16 12 H 0.08 3.28 3.34 -2.39 -0.01 3.27 16 13 C -0.50 -27.87 8.21 25.60 0.21 -27.66 16 14 H 0.02 1.26 8.06 -2.91 -0.02 1.23 16 15 C 0.04 1.93 5.47 84.66 0.46 2.39 16 16 N -0.94 -55.61 13.96 21.45 0.30 -55.31 16 17 Si 0.92 38.38 26.72 68.60 1.83 40.22 16 18 H -0.24 -8.54 7.11 99.48 0.71 -7.84 16 19 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 20 H -0.23 -8.64 4.75 99.48 0.47 -8.17 16 21 C -0.07 -3.16 4.43 -19.87 -0.09 -3.25 16 22 C -0.10 -4.58 7.99 22.27 0.18 -4.40 16 23 C -0.14 -5.33 10.05 22.27 0.22 -5.10 16 24 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 25 C -0.13 -4.10 10.05 22.27 0.22 -3.88 16 26 C -0.14 -5.46 8.52 22.27 0.19 -5.27 16 27 N -0.49 -20.13 7.89 -192.57 -1.52 -21.64 16 28 C 0.03 1.09 10.21 84.75 0.87 1.96 16 29 H 0.06 0.85 7.69 -2.39 -0.02 0.84 16 30 H 0.13 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 32 H 0.18 2.70 8.06 -2.91 -0.02 2.67 16 33 H 0.18 3.21 6.03 -2.91 -0.02 3.19 16 34 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.49 5.85 -2.39 -0.01 2.48 16 36 H 0.12 2.32 5.98 -2.39 -0.01 2.30 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 38 H 0.08 4.39 7.58 -2.91 -0.02 4.37 16 39 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 40 H 0.15 3.58 8.06 -2.91 -0.02 3.55 16 41 H 0.15 3.61 8.06 -2.91 -0.02 3.58 16 42 H 0.13 4.36 7.00 -2.91 -0.02 4.34 16 43 H 0.17 4.52 6.30 -2.91 -0.02 4.50 16 Total: -1.00 -80.42 352.48 5.34 -75.08 By element: Atomic # 1 Polarization: 30.12 SS G_CDS: 0.81 Total: 30.93 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 6.98 Total: -9.26 kcal Atomic # 7 Polarization: -97.69 SS G_CDS: -3.26 Total: -100.95 kcal Atomic # 8 Polarization: -35.00 SS G_CDS: -1.02 Total: -36.02 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 1.83 Total: 40.22 kcal Total: -80.42 5.34 -75.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361406168.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.599 kcal (2) G-P(sol) polarization free energy of solvation -80.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds