Wall clock time and date at job start Tue Mar 31 2020 14:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35982 * 117.00481 * 2 1 4 4 C 1.39235 * 120.40043 * 180.02562 * 3 2 1 5 5 C 1.38334 * 118.44946 * 179.70181 * 4 3 2 6 6 C 1.39006 * 119.16101 * 0.27976 * 5 4 3 7 7 N 1.39586 * 119.63979 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00039 * 4.99176 * 7 6 5 9 9 C 1.34777 * 120.00186 * 185.00264 * 7 6 5 10 10 O 1.21278 * 119.99770 * 5.60440 * 9 7 6 11 11 C 1.50705 * 120.00074 * 185.61305 * 9 7 6 12 12 H 1.09007 * 109.46861 * 48.82001 * 11 9 7 13 13 C 1.50696 * 109.46961 * 288.82177 * 11 9 7 14 14 H 1.08001 * 120.00113 * 327.32490 * 13 11 9 15 15 C 1.37882 * 119.99775 * 147.31953 * 13 11 9 16 16 N 1.31513 * 119.99920 * 185.71937 * 15 13 11 17 17 Si 1.86796 * 119.99997 * 5.71856 * 15 13 11 18 18 H 1.48505 * 109.47173 * 93.61826 * 17 15 13 19 19 H 1.48497 * 109.47278 * 213.61532 * 17 15 13 20 20 H 1.48496 * 109.47277 * 333.61586 * 17 15 13 21 21 C 1.50693 * 109.47021 * 168.82188 * 11 9 7 22 22 C 1.38230 * 120.00279 * 66.17767 * 21 11 9 23 23 C 1.38235 * 120.00585 * 179.81054 * 22 21 11 24 24 C 1.38245 * 119.99461 * 0.39413 * 23 22 21 25 25 C 1.38230 * 120.00018 * 359.86036 * 24 23 22 26 26 C 1.38237 * 120.00097 * 359.95226 * 25 24 23 27 27 N 1.32299 * 120.72455 * 359.97438 * 6 5 4 28 28 C 1.31940 * 121.69190 * 0.02562 * 27 6 5 29 29 H 1.08999 * 109.46461 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.46703 * 59.99463 * 1 2 3 31 31 H 1.08992 * 109.47259 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.77718 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.42098 * 180.25235 * 5 4 3 34 34 H 1.09003 * 109.46599 * 84.51705 * 8 7 6 35 35 H 1.09000 * 109.47152 * 204.51860 * 8 7 6 36 36 H 1.08997 * 109.47243 * 324.52195 * 8 7 6 37 37 H 0.96997 * 119.99744 * 180.02562 * 16 15 13 38 38 H 1.08006 * 119.99851 * 359.97438 * 22 21 11 39 39 H 1.08001 * 120.00501 * 180.22647 * 23 22 21 40 40 H 1.07998 * 119.99606 * 179.83694 * 24 23 22 41 41 H 1.08001 * 120.00181 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.00000 * 180.02562 * 26 25 24 43 43 H 1.08008 * 119.61447 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4364 1.2940 -0.0005 5 6 4.0222 2.5472 -0.0068 6 6 3.2094 3.6748 -0.0065 7 7 3.7899 4.9442 -0.0123 8 6 5.2435 5.0844 -0.1291 9 6 3.0132 6.0410 0.0898 10 8 1.8225 5.9244 0.2886 11 6 3.6242 7.4121 -0.0433 12 1 4.2545 7.4443 -0.9321 13 6 4.4588 7.7106 1.1755 14 1 4.1700 7.3147 2.1379 15 6 5.5912 8.4889 1.0618 16 7 6.3806 8.6569 2.1001 17 14 6.0041 9.3048 -0.5670 18 1 5.4499 10.6825 -0.5851 19 1 7.4787 9.3624 -0.7321 20 1 5.4119 8.5184 -1.6788 21 6 2.5293 8.4402 -0.1663 22 6 1.6786 8.6748 0.8976 23 6 0.6767 9.6206 0.7862 24 6 0.5203 10.3261 -0.3923 25 6 1.3677 10.0878 -1.4582 26 6 2.3721 9.1447 -1.3453 27 7 1.8915 3.5582 -0.0007 28 6 1.3001 2.3788 0.0054 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0430 0.4005 -0.0005 33 1 5.0975 2.6482 -0.0115 34 1 5.5278 5.0558 -1.1810 35 1 5.5529 6.0351 0.3053 36 1 5.7312 4.2667 0.4015 37 1 7.1771 9.2048 2.0202 38 1 1.7985 8.1209 1.8171 39 1 0.0144 9.8064 1.6188 40 1 -0.2641 11.0632 -0.4804 41 1 1.2453 10.6387 -2.3790 42 1 3.0343 8.9589 -2.1779 43 1 0.2215 2.3226 0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361406173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:30 Heat of formation + Delta-G solvation = 18.560870 kcal Electronic energy + Delta-G solvation = -27550.071489 eV Core-core repulsion = 23754.927535 eV Total energy + Delta-G solvation = -3795.143955 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75066 -39.51598 -38.38796 -37.39302 -34.94107 -33.74675 -32.29900 -31.58212 -30.13679 -29.64065 -27.87523 -27.51763 -26.28343 -24.08962 -23.37204 -22.29501 -21.84249 -20.88145 -19.00752 -18.10197 -17.25429 -17.06940 -16.78539 -16.01671 -15.86980 -15.55328 -15.00965 -14.82680 -14.51506 -14.29242 -14.09559 -13.68531 -13.39231 -13.08978 -12.99629 -12.72903 -12.68850 -12.56536 -12.34029 -12.14702 -11.98900 -11.86024 -11.55865 -11.49259 -11.18037 -10.97944 -10.49039 -10.27425 -9.92190 -9.69467 -9.64833 -9.39593 -9.38374 -8.90010 -8.47955 -8.12899 -7.84004 -7.42112 -6.39216 -4.42243 1.26983 1.49224 2.13133 2.20616 3.09741 3.14401 3.17365 3.23370 3.34488 3.47190 4.14064 4.15305 4.55104 4.67554 4.76037 4.91718 4.93216 5.03712 5.06207 5.27707 5.35082 5.52239 5.53369 5.58583 5.66686 5.74357 5.77605 5.89943 5.90653 5.94679 6.08226 6.24954 6.30336 6.36481 6.43744 6.59036 6.71241 6.84926 7.08850 7.16011 7.20034 7.24955 7.29623 7.57562 7.67656 7.80818 8.14436 8.38128 8.62056 8.99400 9.16323 10.70760 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.004162 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.800270 B = 6725.594312 C = 8164.235734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.023 3.977 4 C -0.077 4.077 5 C -0.179 4.179 6 C 0.344 3.656 7 N -0.545 5.545 8 C 0.055 3.945 9 C 0.528 3.472 10 O -0.492 6.492 11 C 0.022 3.978 12 H 0.075 0.925 13 C -0.510 4.510 14 H 0.084 0.916 15 C 0.087 3.913 16 N -0.877 5.877 17 Si 0.860 3.140 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.256 1.256 21 C -0.034 4.034 22 C -0.067 4.067 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.130 4.130 26 C -0.137 4.137 27 N -0.446 5.446 28 C 0.056 3.944 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.052 0.948 35 H 0.131 0.869 36 H 0.067 0.933 37 H 0.271 0.729 38 H 0.119 0.881 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 -10.420 -6.202 13.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C -0.025 4.025 4 C -0.104 4.104 5 C -0.202 4.202 6 C 0.113 3.887 7 N -0.271 5.271 8 C -0.086 4.086 9 C 0.318 3.682 10 O -0.362 6.362 11 C 0.000 4.000 12 H 0.092 0.908 13 C -0.547 4.547 14 H 0.102 0.898 15 C -0.118 4.118 16 N -0.512 5.512 17 Si 0.687 3.313 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.181 1.181 21 C -0.035 4.035 22 C -0.085 4.085 23 C -0.148 4.148 24 C -0.159 4.159 25 C -0.148 4.148 26 C -0.155 4.155 27 N -0.161 5.161 28 C -0.104 4.104 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.071 0.929 35 H 0.149 0.851 36 H 0.086 0.914 37 H 0.081 0.919 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.127 0.873 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.181 -9.692 -5.999 12.967 hybrid contribution 0.690 -0.078 -0.728 1.006 sum -5.492 -9.770 -6.727 13.071 Atomic orbital electron populations 1.23028 0.78634 1.03736 1.01494 1.86023 1.21086 1.26263 1.89676 1.19897 0.93166 0.85563 1.03856 1.20604 0.91483 0.97922 1.00361 1.21472 1.01237 0.90794 1.06736 1.18691 0.88633 0.86082 0.95280 1.45730 1.08806 1.02668 1.69868 1.22483 0.77311 1.07321 1.01525 1.21460 0.86238 0.86091 0.74411 1.90682 1.15161 1.86273 1.44061 1.18663 0.93669 0.86569 1.01051 0.90758 1.20480 1.07249 1.33705 0.93252 0.89822 1.24954 0.95311 0.94989 0.96579 1.69865 1.13580 1.37710 1.30036 0.87090 0.77897 0.81651 0.84685 1.19270 1.20786 1.18121 1.20058 0.94533 0.96536 0.92415 1.20879 0.93273 0.95769 0.98569 1.21052 0.98907 0.97438 0.97409 1.20879 1.00022 1.00867 0.94134 1.20878 0.96528 0.99049 0.98366 1.21000 0.98872 0.98309 0.97316 1.67593 1.09670 1.25671 1.13121 1.22787 1.00226 0.86423 1.00957 0.92614 0.92689 0.88376 0.84128 0.83726 0.92918 0.85149 0.91391 0.91918 0.86304 0.87076 0.87304 0.87245 0.87319 0.82792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.82 101.05 0.99 1.21 16 2 O -0.32 -3.87 10.51 -19.68 -0.21 -4.08 16 3 C 0.02 0.33 6.71 -39.10 -0.26 0.06 16 4 C -0.08 -1.02 10.12 -39.18 -0.40 -1.42 16 5 C -0.18 -2.61 9.26 -39.26 -0.36 -2.97 16 6 C 0.34 6.40 7.31 -154.58 -1.13 5.27 16 7 N -0.54 -10.78 3.09 -122.73 -0.38 -11.16 16 8 C 0.06 0.92 9.48 59.85 0.57 1.49 16 9 C 0.53 11.95 6.85 -10.98 -0.08 11.87 16 10 O -0.49 -12.17 13.55 5.56 0.08 -12.09 16 11 C 0.02 0.50 1.10 -94.08 -0.10 0.39 16 12 H 0.07 1.62 4.62 -51.93 -0.24 1.38 16 13 C -0.51 -12.68 6.14 -34.44 -0.21 -12.89 16 14 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 15 C 0.09 2.20 5.04 -17.82 -0.09 2.11 16 16 N -0.88 -23.70 13.96 55.43 0.77 -22.93 16 17 Si 0.86 19.03 27.05 -169.99 -4.60 14.43 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 20 H -0.26 -5.23 5.81 56.52 0.33 -4.90 16 21 C -0.03 -0.77 4.04 -104.63 -0.42 -1.19 16 22 C -0.07 -1.47 8.08 -39.59 -0.32 -1.79 16 23 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 24 C -0.14 -2.47 10.05 -39.58 -0.40 -2.87 16 25 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 26 C -0.14 -2.77 9.24 -39.58 -0.37 -3.14 16 27 N -0.45 -8.75 7.92 -12.22 -0.10 -8.85 16 28 C 0.06 0.87 10.21 -17.39 -0.18 0.70 16 29 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 30 H 0.05 0.43 7.69 -51.93 -0.40 0.03 16 31 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.15 1.73 6.14 -52.48 -0.32 1.40 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.13 2.54 4.61 -51.93 -0.24 2.30 16 36 H 0.07 0.94 6.28 -51.93 -0.33 0.61 16 37 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 38 H 0.12 2.74 7.88 -52.48 -0.41 2.32 16 39 H 0.11 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 42 H 0.11 2.04 7.96 -52.49 -0.42 1.62 16 43 H 0.16 2.03 6.30 -52.48 -0.33 1.70 16 LS Contribution 353.68 15.07 5.33 5.33 Total: -1.00 -31.46 353.68 -7.91 -39.37 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.26 Total: 8.74 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.55 Total: -8.76 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.30 Total: -42.94 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.13 Total: -16.17 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.60 Total: 14.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.46 -7.91 -39.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361406173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.931 kcal (2) G-P(sol) polarization free energy of solvation -31.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds