Wall clock time and date at job start Tue Mar 31 2020 14:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35982 * 117.00481 * 2 1 4 4 C 1.39235 * 120.40043 * 180.02562 * 3 2 1 5 5 C 1.38334 * 118.44946 * 179.70181 * 4 3 2 6 6 C 1.39006 * 119.16101 * 0.27976 * 5 4 3 7 7 N 1.39586 * 119.63979 * 179.97438 * 6 5 4 8 8 C 1.46502 * 120.00039 * 4.99176 * 7 6 5 9 9 C 1.34777 * 120.00186 * 185.00264 * 7 6 5 10 10 O 1.21278 * 119.99770 * 5.60440 * 9 7 6 11 11 C 1.50705 * 120.00074 * 185.61305 * 9 7 6 12 12 H 1.09007 * 109.46861 * 48.82001 * 11 9 7 13 13 C 1.50696 * 109.46961 * 288.82177 * 11 9 7 14 14 H 1.08001 * 120.00113 * 327.32490 * 13 11 9 15 15 C 1.37882 * 119.99775 * 147.31953 * 13 11 9 16 16 N 1.31513 * 119.99920 * 185.71937 * 15 13 11 17 17 Si 1.86796 * 119.99997 * 5.71856 * 15 13 11 18 18 H 1.48505 * 109.47173 * 93.61826 * 17 15 13 19 19 H 1.48497 * 109.47278 * 213.61532 * 17 15 13 20 20 H 1.48496 * 109.47277 * 333.61586 * 17 15 13 21 21 C 1.50693 * 109.47021 * 168.82188 * 11 9 7 22 22 C 1.38230 * 120.00279 * 66.17767 * 21 11 9 23 23 C 1.38235 * 120.00585 * 179.81054 * 22 21 11 24 24 C 1.38245 * 119.99461 * 0.39413 * 23 22 21 25 25 C 1.38230 * 120.00018 * 359.86036 * 24 23 22 26 26 C 1.38237 * 120.00097 * 359.95226 * 25 24 23 27 27 N 1.32299 * 120.72455 * 359.97438 * 6 5 4 28 28 C 1.31940 * 121.69190 * 0.02562 * 27 6 5 29 29 H 1.08999 * 109.46461 * 300.00086 * 1 2 3 30 30 H 1.08998 * 109.46703 * 59.99463 * 1 2 3 31 31 H 1.08992 * 109.47259 * 179.97438 * 1 2 3 32 32 H 1.08002 * 120.77718 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.42098 * 180.25235 * 5 4 3 34 34 H 1.09003 * 109.46599 * 84.51705 * 8 7 6 35 35 H 1.09000 * 109.47152 * 204.51860 * 8 7 6 36 36 H 1.08997 * 109.47243 * 324.52195 * 8 7 6 37 37 H 0.96997 * 119.99744 * 180.02562 * 16 15 13 38 38 H 1.08006 * 119.99851 * 359.97438 * 22 21 11 39 39 H 1.08001 * 120.00501 * 180.22647 * 23 22 21 40 40 H 1.07998 * 119.99606 * 179.83694 * 24 23 22 41 41 H 1.08001 * 120.00181 * 179.97438 * 25 24 23 42 42 H 1.07999 * 120.00000 * 180.02562 * 26 25 24 43 43 H 1.08008 * 119.61447 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4364 1.2940 -0.0005 5 6 4.0222 2.5472 -0.0068 6 6 3.2094 3.6748 -0.0065 7 7 3.7899 4.9442 -0.0123 8 6 5.2435 5.0844 -0.1291 9 6 3.0132 6.0410 0.0898 10 8 1.8225 5.9244 0.2886 11 6 3.6242 7.4121 -0.0433 12 1 4.2545 7.4443 -0.9321 13 6 4.4588 7.7106 1.1755 14 1 4.1700 7.3147 2.1379 15 6 5.5912 8.4889 1.0618 16 7 6.3806 8.6569 2.1001 17 14 6.0041 9.3048 -0.5670 18 1 5.4499 10.6825 -0.5851 19 1 7.4787 9.3624 -0.7321 20 1 5.4119 8.5184 -1.6788 21 6 2.5293 8.4402 -0.1663 22 6 1.6786 8.6748 0.8976 23 6 0.6767 9.6206 0.7862 24 6 0.5203 10.3261 -0.3923 25 6 1.3677 10.0878 -1.4582 26 6 2.3721 9.1447 -1.3453 27 7 1.8915 3.5582 -0.0007 28 6 1.3001 2.3788 0.0054 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 4.0430 0.4005 -0.0005 33 1 5.0975 2.6482 -0.0115 34 1 5.5278 5.0558 -1.1810 35 1 5.5529 6.0351 0.3053 36 1 5.7312 4.2667 0.4015 37 1 7.1771 9.2048 2.0202 38 1 1.7985 8.1209 1.8171 39 1 0.0144 9.8064 1.6188 40 1 -0.2641 11.0632 -0.4804 41 1 1.2453 10.6387 -2.3790 42 1 3.0343 8.9589 -2.1779 43 1 0.2215 2.3226 0.0104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361406173.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:29 Heat of formation + Delta-G solvation = 0.070452 kcal Electronic energy + Delta-G solvation = -27550.873294 eV Core-core repulsion = 23754.927535 eV Total energy + Delta-G solvation = -3795.945759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.04557 -40.91909 -39.73236 -38.70319 -36.46852 -35.51393 -33.49200 -33.34503 -31.64581 -30.88557 -29.34829 -28.58518 -27.56915 -25.74161 -24.74802 -23.57478 -23.33512 -22.31893 -20.51994 -19.15436 -19.13727 -18.36502 -18.27287 -17.47929 -17.05565 -16.83546 -16.46444 -16.16284 -15.99135 -15.76552 -15.42349 -14.96941 -14.80046 -14.54359 -14.43881 -14.22465 -14.12540 -13.86813 -13.82173 -13.62553 -13.39826 -13.06327 -12.89151 -12.76689 -12.58063 -12.44921 -12.04524 -11.96837 -11.60545 -11.42374 -10.98583 -10.92306 -10.74877 -10.58932 -9.97749 -9.65176 -9.39580 -8.70734 -8.35533 -6.42010 0.08296 0.31510 0.61186 0.68411 1.33318 1.40921 1.45332 1.82591 1.90233 2.29170 2.32433 2.87268 2.95138 3.09856 3.45294 3.67899 3.84960 4.03015 4.10261 4.19324 4.21371 4.31884 4.33958 4.38167 4.38812 4.39494 4.54887 4.59584 4.68020 4.72571 4.79546 4.81932 4.88382 4.95470 5.08637 5.18414 5.30464 5.32723 5.38800 5.66959 5.71903 5.77762 5.93519 6.13160 6.21648 6.28107 6.32063 6.57410 7.06603 7.18976 7.39068 8.78572 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013590 B = 0.004162 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.800270 B = 6725.594312 C = 8164.235734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.320 6.320 3 C 0.039 3.961 4 C -0.075 4.075 5 C -0.164 4.164 6 C 0.304 3.696 7 N -0.550 5.550 8 C 0.053 3.947 9 C 0.520 3.480 10 O -0.526 6.526 11 C 0.030 3.970 12 H 0.083 0.917 13 C -0.496 4.496 14 H 0.032 0.968 15 C 0.047 3.953 16 N -0.924 5.924 17 Si 0.914 3.086 18 H -0.275 1.275 19 H -0.274 1.274 20 H -0.228 1.228 21 C -0.062 4.062 22 C -0.098 4.098 23 C -0.135 4.135 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.152 4.152 27 N -0.491 5.491 28 C 0.036 3.964 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.128 0.872 32 H 0.178 0.822 33 H 0.173 0.827 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.273 0.727 38 H 0.085 0.915 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.123 0.877 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.678 -11.290 -8.878 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.233 6.233 3 C -0.010 4.010 4 C -0.101 4.101 5 C -0.187 4.187 6 C 0.074 3.926 7 N -0.276 5.276 8 C -0.088 4.088 9 C 0.310 3.690 10 O -0.400 6.400 11 C 0.008 3.992 12 H 0.101 0.899 13 C -0.534 4.534 14 H 0.050 0.950 15 C -0.155 4.155 16 N -0.561 5.561 17 Si 0.738 3.262 18 H -0.201 1.201 19 H -0.199 1.199 20 H -0.152 1.152 21 C -0.063 4.063 22 C -0.116 4.116 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.143 4.143 26 C -0.170 4.170 27 N -0.206 5.206 28 C -0.123 4.123 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.195 0.805 33 H 0.191 0.809 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.141 0.859 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -6.544 -10.623 -8.687 15.204 hybrid contribution 0.629 0.003 0.179 0.654 sum -5.915 -10.621 -8.508 14.838 Atomic orbital electron populations 1.23358 0.76589 1.05900 1.01995 1.86038 1.23178 1.24998 1.89056 1.20010 0.93711 0.85688 1.01589 1.21040 0.91538 0.98592 0.98911 1.21743 1.02262 0.89916 1.04787 1.18981 0.89108 0.86359 0.98121 1.45683 1.09543 1.02793 1.69599 1.22548 0.76004 1.06736 1.03528 1.21484 0.86147 0.86988 0.74374 1.90637 1.16482 1.86932 1.45916 1.18538 0.93685 0.87197 0.99733 0.89918 1.20255 1.07687 1.33202 0.92239 0.94978 1.25576 0.94859 0.95261 0.99771 1.69985 1.14469 1.39211 1.32438 0.86226 0.78124 0.80256 0.81636 1.20101 1.19896 1.15166 1.20120 0.95194 0.97294 0.93723 1.20810 0.95518 0.97529 0.97789 1.21356 0.98134 0.96595 0.99202 1.21357 1.00425 1.00545 0.92876 1.21371 0.95038 0.97921 0.99956 1.21269 1.00166 0.98750 0.96808 1.67426 1.10947 1.27938 1.14313 1.23030 1.01153 0.86224 1.01844 0.92325 0.92020 0.85417 0.80480 0.80931 0.90038 0.88244 0.88624 0.91769 0.89643 0.84942 0.83140 0.83236 0.85892 0.81412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.82 113.37 1.11 1.34 16 2 O -0.32 -7.00 10.51 -93.35 -0.98 -7.98 16 3 C 0.04 1.02 6.71 22.58 0.15 1.17 16 4 C -0.07 -1.77 10.12 22.53 0.23 -1.54 16 5 C -0.16 -4.51 9.26 22.48 0.21 -4.31 16 6 C 0.30 11.42 7.31 132.86 0.97 12.39 16 7 N -0.55 -22.37 3.09 -660.59 -2.04 -24.41 16 8 C 0.05 1.75 9.48 127.77 1.21 2.96 16 9 C 0.52 24.80 6.85 87.66 0.60 25.40 16 10 O -0.53 -27.76 13.55 -3.02 -0.04 -27.81 16 11 C 0.03 1.40 1.10 -13.03 -0.01 1.39 16 12 H 0.08 3.62 4.62 -2.38 -0.01 3.61 16 13 C -0.50 -26.29 6.14 25.60 0.16 -26.13 16 14 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 15 C 0.05 2.44 5.04 84.66 0.43 2.87 16 16 N -0.92 -52.24 13.96 21.45 0.30 -51.94 16 17 Si 0.91 39.23 27.05 68.60 1.86 41.09 16 18 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 20 H -0.23 -8.65 5.81 99.48 0.58 -8.08 16 21 C -0.06 -2.85 4.04 -19.87 -0.08 -2.93 16 22 C -0.10 -4.53 8.08 22.27 0.18 -4.35 16 23 C -0.13 -5.10 10.05 22.27 0.22 -4.88 16 24 C -0.13 -4.33 10.05 22.27 0.22 -4.11 16 25 C -0.13 -4.12 10.05 22.27 0.22 -3.90 16 26 C -0.15 -5.96 9.24 22.27 0.21 -5.75 16 27 N -0.49 -19.86 7.92 -192.57 -1.53 -21.39 16 28 C 0.04 1.13 10.21 84.75 0.87 2.00 16 29 H 0.06 0.84 7.66 -2.39 -0.02 0.82 16 30 H 0.06 0.84 7.69 -2.39 -0.02 0.82 16 31 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.17 3.61 6.14 -2.91 -0.02 3.59 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.10 3.99 4.61 -2.39 -0.01 3.98 16 36 H 0.10 2.54 6.28 -2.39 -0.02 2.53 16 37 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 38 H 0.09 4.37 7.88 -2.91 -0.02 4.35 16 39 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 41 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 42 H 0.12 4.35 7.96 -2.91 -0.02 4.33 16 43 H 0.17 4.45 6.30 -2.91 -0.02 4.44 16 Total: -1.00 -74.66 353.68 5.37 -69.29 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.91 Total: 31.53 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: 6.90 Total: -8.39 kcal Atomic # 7 Polarization: -94.48 SS G_CDS: -3.27 Total: -97.74 kcal Atomic # 8 Polarization: -34.76 SS G_CDS: -1.02 Total: -35.78 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.86 Total: 41.09 kcal Total: -74.66 5.37 -69.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361406173.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.360 kcal (2) G-P(sol) polarization free energy of solvation -74.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds