Wall clock time and date at job start Tue Mar 31 2020 14:41:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35743 * 117.00062 * 2 1 4 4 C 1.39284 * 120.84706 * 0.24822 * 3 2 1 5 5 C 1.37946 * 119.09609 * 180.29076 * 4 3 2 6 6 N 1.31983 * 120.81757 * 359.70430 * 5 4 3 7 7 C 1.31941 * 121.86606 * 0.02562 * 6 5 4 8 8 C 1.37990 * 120.82080 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.45309 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47176 * 259.99649 * 9 8 7 11 11 C 1.34779 * 120.00031 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99755 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00222 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.46972 * 60.00024 * 13 11 10 15 15 C 1.50704 * 109.46921 * 300.00124 * 13 11 10 16 16 H 1.07999 * 120.00298 * 324.88487 * 15 13 11 17 17 C 1.37878 * 119.99841 * 144.87877 * 15 13 11 18 18 N 1.31512 * 120.00059 * 5.19548 * 17 15 13 19 19 Si 1.86802 * 120.00150 * 185.19749 * 17 15 13 20 20 H 1.48501 * 109.47227 * 59.99618 * 19 17 15 21 21 H 1.48497 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46807 * 299.99890 * 19 17 15 23 23 C 1.50697 * 109.47155 * 180.02562 * 13 11 10 24 24 C 1.38241 * 119.99990 * 66.01397 * 23 13 11 25 25 C 1.38234 * 119.99835 * 179.80830 * 24 23 13 26 26 C 1.38233 * 119.99866 * 0.39620 * 25 24 23 27 27 C 1.38240 * 120.00335 * 359.85325 * 26 25 24 28 28 C 1.38233 * 119.99762 * 359.95742 * 27 26 25 29 29 H 1.08990 * 109.47367 * 300.00266 * 1 2 3 30 30 H 1.09004 * 109.46934 * 60.00141 * 1 2 3 31 31 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.45206 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.59188 * 179.72557 * 5 4 3 34 34 H 1.08004 * 119.58705 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46883 * 139.99497 * 9 8 7 36 36 H 1.09003 * 109.47171 * 19.99812 * 9 8 7 37 37 H 0.97000 * 119.99908 * 0.02562 * 10 9 8 38 38 H 0.97003 * 120.00237 * 180.02562 * 18 17 15 39 39 H 1.08002 * 119.99717 * 359.97438 * 24 23 13 40 40 H 1.07997 * 119.99896 * 180.22927 * 25 24 23 41 41 H 1.08002 * 120.00124 * 179.83640 * 26 25 24 42 42 H 1.07993 * 120.00172 * 179.97438 * 27 26 25 43 43 H 1.08001 * 119.99960 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3887 0.0052 5 6 1.9675 3.5981 -0.0011 6 7 3.2865 3.6457 -0.0061 7 6 4.0230 2.5510 -0.0057 8 6 3.4345 1.3029 -0.0006 9 6 4.2838 0.0579 -0.0009 10 7 4.3558 -0.4838 -1.3601 11 6 5.0667 -1.6029 -1.6027 12 8 5.6465 -2.1616 -0.6956 13 6 5.1413 -2.1599 -3.0010 14 1 5.5843 -1.4174 -3.6647 15 6 3.7536 -2.4988 -3.4813 16 1 3.0190 -2.8777 -2.7862 17 6 3.4219 -2.3251 -4.8083 18 7 4.3426 -1.9616 -5.6741 19 14 1.6646 -2.6060 -5.3762 20 1 0.7569 -1.6780 -4.6550 21 1 1.5702 -2.3546 -6.8367 22 1 1.2695 -4.0083 -5.0882 23 6 5.9904 -3.4049 -3.0011 24 6 5.5621 -4.5338 -2.3280 25 6 6.3391 -5.6770 -2.3315 26 6 7.5484 -5.6888 -3.0012 27 6 7.9792 -4.5582 -3.6700 28 6 7.2003 -3.4162 -3.6698 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2245 2.3566 0.0097 33 1 1.4007 4.5173 -0.0017 34 1 5.1000 2.6328 -0.0103 35 1 3.8407 -0.6843 0.6632 36 1 5.2876 0.3028 0.3463 37 1 3.8924 -0.0368 -2.0855 38 1 4.1091 -1.8391 -6.6076 39 1 4.6190 -4.5234 -1.8017 40 1 6.0027 -6.5602 -1.8088 41 1 8.1568 -6.5811 -3.0017 42 1 8.9241 -4.5673 -4.1928 43 1 7.5370 -2.5328 -4.1919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361471525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:58 Heat of formation + Delta-G solvation = -18.153156 kcal Electronic energy + Delta-G solvation = -27208.101607 eV Core-core repulsion = 23411.365613 eV Total energy + Delta-G solvation = -3796.735994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.80937 -39.03552 -38.27057 -37.65353 -34.59422 -33.61349 -31.49691 -31.31085 -30.99952 -29.89091 -27.84125 -27.53599 -25.89170 -23.78819 -22.99804 -22.11024 -21.54631 -20.70579 -19.25813 -18.44670 -17.20416 -16.78849 -16.32779 -16.02853 -15.79118 -15.27053 -15.05471 -14.90135 -14.46821 -14.33075 -14.19125 -13.89126 -13.69189 -13.58759 -13.11588 -12.69282 -12.49910 -12.29412 -12.20520 -12.09611 -11.70670 -11.62183 -11.47346 -11.20589 -11.02782 -11.01322 -10.39930 -10.23362 -9.99722 -9.62632 -9.41143 -9.32407 -8.99084 -8.73715 -8.48762 -8.27489 -7.89862 -7.55628 -6.25642 -4.31287 0.93865 1.24890 2.42552 2.45391 3.03355 3.18722 3.24869 3.25947 3.62764 3.76769 4.25335 4.28815 4.36339 4.52298 4.68431 4.87547 4.89170 4.96920 5.01245 5.11269 5.21771 5.35098 5.45873 5.57412 5.76057 5.80233 5.83260 5.92280 5.98193 6.15224 6.25556 6.39691 6.46369 6.54271 6.64841 6.89938 7.01912 7.08950 7.18621 7.25791 7.41362 7.49402 7.64968 7.79633 7.90184 7.99982 8.11368 8.42986 8.72609 9.27881 9.34676 10.82750 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011771 B = 0.004135 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.236346 B = 6770.394044 C = 7907.891911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.295 6.295 3 C 0.187 3.813 4 C -0.267 4.267 5 C 0.136 3.864 6 N -0.511 5.511 7 C 0.149 3.851 8 C -0.184 4.184 9 C 0.176 3.824 10 N -0.722 5.722 11 C 0.528 3.472 12 O -0.568 6.568 13 C 0.051 3.949 14 H 0.088 0.912 15 C -0.512 4.512 16 H 0.062 0.938 17 C 0.073 3.927 18 N -0.878 5.878 19 Si 0.897 3.103 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.007 4.007 24 C -0.085 4.085 25 C -0.135 4.135 26 C -0.150 4.150 27 C -0.132 4.132 28 C -0.118 4.118 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.138 0.862 33 H 0.156 0.844 34 H 0.164 0.836 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.404 0.596 38 H 0.267 0.733 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.437 6.729 8.551 12.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.204 6.204 3 C 0.132 3.868 4 C -0.288 4.288 5 C -0.021 4.021 6 N -0.223 5.223 7 C -0.007 4.007 8 C -0.187 4.187 9 C 0.052 3.948 10 N -0.375 5.375 11 C 0.318 3.682 12 O -0.447 6.447 13 C 0.030 3.970 14 H 0.106 0.894 15 C -0.549 4.549 16 H 0.080 0.920 17 C -0.131 4.131 18 N -0.514 5.514 19 Si 0.724 3.276 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.008 4.008 24 C -0.103 4.103 25 C -0.153 4.153 26 C -0.168 4.168 27 C -0.150 4.150 28 C -0.136 4.136 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.156 0.844 33 H 0.173 0.827 34 H 0.181 0.819 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.239 0.761 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.124 0.876 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.519 6.942 8.993 12.227 hybrid contribution -2.059 -0.692 -0.866 2.338 sum -6.578 6.250 8.127 12.181 Atomic orbital electron populations 1.23159 0.77889 1.04640 1.01298 1.86214 1.21686 1.25668 1.86854 1.19260 0.91974 0.84879 0.90703 1.22215 1.01542 0.93203 1.11847 1.22546 0.90381 0.96873 0.92303 1.67764 1.07032 1.31976 1.15569 1.22648 1.00415 0.86014 0.91596 1.20476 0.91326 0.97679 1.09243 1.19760 0.97631 0.90845 0.86581 1.45927 1.53938 1.28742 1.08883 1.21641 0.75674 0.78407 0.92469 1.90581 1.46682 1.59764 1.47694 1.18105 0.96913 0.92794 0.89159 0.89422 1.20643 0.94319 1.45766 0.94207 0.91992 1.24962 0.97470 0.94136 0.96579 1.69907 1.32835 1.45380 1.03234 0.86568 0.84433 0.79007 0.77570 1.20110 1.21141 1.19977 1.20009 0.92020 0.96340 0.92465 1.20815 0.98817 0.92435 0.98229 1.20943 0.95549 0.97919 1.00903 1.20786 0.97188 0.97835 1.00966 1.20894 0.99446 0.93938 1.00758 1.20982 0.94609 0.97835 1.00188 0.92586 0.92238 0.87712 0.84390 0.82660 0.81907 0.91015 0.91156 0.76131 0.92345 0.87190 0.87664 0.87774 0.87604 0.87043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.84 101.05 0.99 1.23 16 2 O -0.29 -4.11 9.87 -18.94 -0.19 -4.30 16 3 C 0.19 2.50 6.70 -38.82 -0.26 2.24 16 4 C -0.27 -2.92 9.11 -39.30 -0.36 -3.27 16 5 C 0.14 1.48 11.17 -17.59 -0.20 1.28 16 6 N -0.51 -6.61 10.36 -13.33 -0.14 -6.74 16 7 C 0.15 1.91 10.82 -17.60 -0.19 1.72 16 8 C -0.18 -2.56 5.28 -104.34 -0.55 -3.11 16 9 C 0.18 2.82 5.52 -5.19 -0.03 2.79 16 10 N -0.72 -13.67 5.45 -61.47 -0.33 -14.00 16 11 C 0.53 11.86 7.04 -10.98 -0.08 11.78 16 12 O -0.57 -13.90 15.42 5.55 0.09 -13.81 16 13 C 0.05 1.23 2.38 -94.08 -0.22 1.01 16 14 H 0.09 2.22 7.13 -51.93 -0.37 1.85 16 15 C -0.51 -12.87 7.47 -34.44 -0.26 -13.13 16 16 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 17 C 0.07 1.87 5.45 -17.82 -0.10 1.77 16 18 N -0.88 -23.31 12.84 55.43 0.71 -22.60 16 19 Si 0.90 19.95 29.54 -169.99 -5.02 14.93 16 20 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 21 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 23 C -0.01 -0.17 4.30 -104.62 -0.45 -0.62 16 24 C -0.08 -1.94 8.31 -39.58 -0.33 -2.27 16 25 C -0.13 -2.72 10.05 -39.58 -0.40 -3.12 16 26 C -0.15 -2.84 10.05 -39.58 -0.40 -3.24 16 27 C -0.13 -2.61 10.05 -39.58 -0.40 -3.00 16 28 C -0.12 -2.62 9.67 -39.58 -0.38 -3.01 16 29 H 0.06 0.41 7.70 -51.93 -0.40 0.01 16 30 H 0.06 0.52 7.72 -51.93 -0.40 0.12 16 31 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.14 1.13 6.47 -52.48 -0.34 0.79 16 33 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.16 1.76 8.04 -52.48 -0.42 1.34 16 35 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 36 H 0.07 1.07 8.02 -51.93 -0.42 0.65 16 37 H 0.40 7.61 8.35 -40.82 -0.34 7.27 16 38 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 39 H 0.11 2.55 7.89 -52.49 -0.41 2.14 16 40 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 42 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 43 H 0.11 2.39 7.96 -52.49 -0.42 1.97 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -30.87 371.70 -8.48 -39.35 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: -5.59 Total: 12.53 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -3.60 Total: -10.95 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.24 Total: -43.35 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.10 Total: -18.11 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.87 -8.48 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361471525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.194 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds