Wall clock time and date at job start Tue Mar 31 2020 14:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35743 * 117.00062 * 2 1 4 4 C 1.39284 * 120.84706 * 0.24822 * 3 2 1 5 5 C 1.37946 * 119.09609 * 180.29076 * 4 3 2 6 6 N 1.31983 * 120.81757 * 359.70430 * 5 4 3 7 7 C 1.31941 * 121.86606 * 0.02562 * 6 5 4 8 8 C 1.37990 * 120.82080 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.45309 * 179.97438 * 8 7 6 10 10 N 1.46496 * 109.47176 * 259.99649 * 9 8 7 11 11 C 1.34779 * 120.00031 * 179.97438 * 10 9 8 12 12 O 1.21284 * 119.99755 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00222 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.46972 * 60.00024 * 13 11 10 15 15 C 1.50704 * 109.46921 * 300.00124 * 13 11 10 16 16 H 1.07999 * 120.00298 * 324.88487 * 15 13 11 17 17 C 1.37878 * 119.99841 * 144.87877 * 15 13 11 18 18 N 1.31512 * 120.00059 * 5.19548 * 17 15 13 19 19 Si 1.86802 * 120.00150 * 185.19749 * 17 15 13 20 20 H 1.48501 * 109.47227 * 59.99618 * 19 17 15 21 21 H 1.48497 * 109.47117 * 179.97438 * 19 17 15 22 22 H 1.48508 * 109.46807 * 299.99890 * 19 17 15 23 23 C 1.50697 * 109.47155 * 180.02562 * 13 11 10 24 24 C 1.38241 * 119.99990 * 66.01397 * 23 13 11 25 25 C 1.38234 * 119.99835 * 179.80830 * 24 23 13 26 26 C 1.38233 * 119.99866 * 0.39620 * 25 24 23 27 27 C 1.38240 * 120.00335 * 359.85325 * 26 25 24 28 28 C 1.38233 * 119.99762 * 359.95742 * 27 26 25 29 29 H 1.08990 * 109.47367 * 300.00266 * 1 2 3 30 30 H 1.09004 * 109.46934 * 60.00141 * 1 2 3 31 31 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.08004 * 120.45206 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.59188 * 179.72557 * 5 4 3 34 34 H 1.08004 * 119.58705 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46883 * 139.99497 * 9 8 7 36 36 H 1.09003 * 109.47171 * 19.99812 * 9 8 7 37 37 H 0.97000 * 119.99908 * 0.02562 * 10 9 8 38 38 H 0.97003 * 120.00237 * 180.02562 * 18 17 15 39 39 H 1.08002 * 119.99717 * 359.97438 * 24 23 13 40 40 H 1.07997 * 119.99896 * 180.22927 * 25 24 23 41 41 H 1.08002 * 120.00124 * 179.83640 * 26 25 24 42 42 H 1.07993 * 120.00172 * 179.97438 * 27 26 25 43 43 H 1.08001 * 119.99960 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3040 2.3887 0.0052 5 6 1.9675 3.5981 -0.0011 6 7 3.2865 3.6457 -0.0061 7 6 4.0230 2.5510 -0.0057 8 6 3.4345 1.3029 -0.0006 9 6 4.2838 0.0579 -0.0009 10 7 4.3558 -0.4838 -1.3601 11 6 5.0667 -1.6029 -1.6027 12 8 5.6465 -2.1616 -0.6956 13 6 5.1413 -2.1599 -3.0010 14 1 5.5843 -1.4174 -3.6647 15 6 3.7536 -2.4988 -3.4813 16 1 3.0190 -2.8777 -2.7862 17 6 3.4219 -2.3251 -4.8083 18 7 4.3426 -1.9616 -5.6741 19 14 1.6646 -2.6060 -5.3762 20 1 0.7569 -1.6780 -4.6550 21 1 1.5702 -2.3546 -6.8367 22 1 1.2695 -4.0083 -5.0882 23 6 5.9904 -3.4049 -3.0011 24 6 5.5621 -4.5338 -2.3280 25 6 6.3391 -5.6770 -2.3315 26 6 7.5484 -5.6888 -3.0012 27 6 7.9792 -4.5582 -3.6700 28 6 7.2003 -3.4162 -3.6698 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2245 2.3566 0.0097 33 1 1.4007 4.5173 -0.0017 34 1 5.1000 2.6328 -0.0103 35 1 3.8407 -0.6843 0.6632 36 1 5.2876 0.3028 0.3463 37 1 3.8924 -0.0368 -2.0855 38 1 4.1091 -1.8391 -6.6076 39 1 4.6190 -4.5234 -1.8017 40 1 6.0027 -6.5602 -1.8088 41 1 8.1568 -6.5811 -3.0017 42 1 8.9241 -4.5673 -4.1928 43 1 7.5370 -2.5328 -4.1919 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361471525.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:57 Heat of formation + Delta-G solvation = -37.006161 kcal Electronic energy + Delta-G solvation = -27208.919135 eV Core-core repulsion = 23411.365613 eV Total energy + Delta-G solvation = -3797.553522 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.79202 -40.74288 -39.32268 -39.18596 -36.02965 -35.50815 -32.99711 -32.57379 -32.22666 -31.52581 -29.32956 -28.51375 -27.28515 -25.59717 -23.92148 -23.29059 -23.15362 -22.29429 -20.97397 -19.37156 -18.69110 -18.16800 -17.91808 -17.55611 -17.03344 -16.62305 -16.40875 -16.00995 -15.87318 -15.83818 -15.51372 -15.26034 -15.16171 -14.61943 -14.53237 -14.13309 -13.99145 -13.90562 -13.76142 -13.36833 -13.26009 -13.03112 -12.84918 -12.74832 -12.51343 -12.20707 -12.12655 -11.94765 -11.67401 -11.28600 -10.71193 -10.64905 -10.51518 -10.14595 -9.90267 -9.80782 -9.54652 -9.24029 -8.21115 -6.32456 -0.00513 0.28551 0.76811 0.81997 1.40619 1.41987 1.49507 1.95997 2.16944 2.41817 2.50217 2.91941 3.08265 3.29123 3.42060 3.61957 3.78646 3.89855 4.16762 4.23385 4.29045 4.31006 4.32593 4.40071 4.42970 4.49468 4.55523 4.67192 4.72231 4.75547 4.88594 4.91153 4.98545 5.06399 5.11222 5.37920 5.45566 5.54880 5.63381 5.65366 5.79387 5.84028 5.95533 6.19962 6.24805 6.41565 6.70277 6.77520 6.97890 7.33929 7.53962 8.86782 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011771 B = 0.004135 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.236346 B = 6770.394044 C = 7907.891911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.325 6.325 3 C 0.173 3.827 4 C -0.260 4.260 5 C 0.138 3.862 6 N -0.529 5.529 7 C 0.149 3.851 8 C -0.202 4.202 9 C 0.183 3.817 10 N -0.711 5.711 11 C 0.527 3.473 12 O -0.593 6.593 13 C 0.054 3.946 14 H 0.065 0.935 15 C -0.513 4.513 16 H 0.051 0.949 17 C 0.033 3.967 18 N -0.905 5.905 19 Si 0.953 3.047 20 H -0.263 1.263 21 H -0.283 1.283 22 H -0.277 1.277 23 C -0.036 4.036 24 C -0.111 4.111 25 C -0.136 4.136 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.142 4.142 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.169 0.831 33 H 0.192 0.808 34 H 0.175 0.825 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.404 0.596 38 H 0.267 0.733 39 H 0.093 0.907 40 H 0.135 0.865 41 H 0.147 0.853 42 H 0.140 0.860 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 6.791 8.758 12.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.236 6.236 3 C 0.119 3.881 4 C -0.281 4.281 5 C -0.018 4.018 6 N -0.241 5.241 7 C -0.007 4.007 8 C -0.205 4.205 9 C 0.059 3.941 10 N -0.361 5.361 11 C 0.317 3.683 12 O -0.474 6.474 13 C 0.032 3.968 14 H 0.083 0.917 15 C -0.551 4.551 16 H 0.069 0.931 17 C -0.169 4.169 18 N -0.542 5.542 19 Si 0.778 3.222 20 H -0.188 1.188 21 H -0.209 1.209 22 H -0.203 1.203 23 C -0.037 4.037 24 C -0.129 4.129 25 C -0.153 4.153 26 C -0.161 4.161 27 C -0.147 4.147 28 C -0.160 4.160 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.186 0.814 33 H 0.209 0.791 34 H 0.192 0.808 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.153 0.847 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.443 7.035 9.216 12.808 hybrid contribution -1.784 -0.707 -0.879 2.111 sum -7.227 6.328 8.337 12.719 Atomic orbital electron populations 1.23434 0.75858 1.05626 1.02930 1.86173 1.24009 1.26448 1.86986 1.19498 0.92019 0.85685 0.90939 1.22515 1.02982 0.92070 1.10496 1.23184 0.89919 0.98309 0.90406 1.67837 1.08211 1.31744 1.16324 1.22819 1.01172 0.85666 0.91066 1.20316 0.91696 0.96879 1.11657 1.19746 0.98472 0.91543 0.84347 1.45866 1.52434 1.27517 1.10292 1.21413 0.76045 0.79167 0.91720 1.90545 1.48022 1.60794 1.48071 1.17993 0.96487 0.92799 0.89481 0.91693 1.20682 0.94692 1.45522 0.94221 0.93121 1.25607 1.00805 0.93980 0.96532 1.70015 1.34396 1.46469 1.03344 0.85684 0.80508 0.78787 0.77195 1.18763 1.20864 1.20276 1.20101 0.93105 0.96468 0.93992 1.20835 0.99121 0.93672 0.99308 1.21320 0.95624 0.97800 1.00602 1.21271 0.96787 0.98955 0.99126 1.21305 1.00172 0.93053 1.00182 1.21136 0.94938 0.99121 1.00845 0.90085 0.91345 0.87248 0.81367 0.79137 0.80787 0.92544 0.90537 0.76138 0.92407 0.88882 0.84682 0.83483 0.84197 0.87533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.84 113.37 1.12 1.39 16 2 O -0.33 -9.03 9.87 -90.68 -0.89 -9.93 16 3 C 0.17 4.53 6.70 22.76 0.15 4.68 16 4 C -0.26 -5.07 9.11 22.45 0.20 -4.87 16 5 C 0.14 2.65 11.17 84.60 0.95 3.59 16 6 N -0.53 -12.88 10.36 -196.09 -2.03 -14.91 16 7 C 0.15 3.75 10.82 84.62 0.92 4.67 16 8 C -0.20 -5.66 5.28 -19.68 -0.10 -5.76 16 9 C 0.18 6.08 5.52 85.64 0.47 6.55 16 10 N -0.71 -28.16 5.45 -466.78 -2.54 -30.70 16 11 C 0.53 24.88 7.04 87.66 0.62 25.49 16 12 O -0.59 -30.32 15.42 -3.04 -0.05 -30.36 16 13 C 0.05 2.70 2.38 -13.03 -0.03 2.67 16 14 H 0.07 3.51 7.13 -2.39 -0.02 3.49 16 15 C -0.51 -26.80 7.47 25.60 0.19 -26.61 16 16 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 17 C 0.03 1.69 5.45 84.66 0.46 2.15 16 18 N -0.91 -49.31 12.84 21.45 0.28 -49.03 16 19 Si 0.95 41.21 29.54 68.60 2.03 43.24 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 22 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 23 C -0.04 -1.76 4.30 -19.87 -0.09 -1.85 16 24 C -0.11 -5.21 8.31 22.27 0.18 -5.02 16 25 C -0.14 -5.29 10.05 22.27 0.22 -5.06 16 26 C -0.14 -5.05 10.05 22.27 0.22 -4.83 16 27 C -0.13 -4.88 10.05 22.27 0.22 -4.65 16 28 C -0.14 -6.44 9.67 22.27 0.22 -6.22 16 29 H 0.08 0.99 7.70 -2.39 -0.02 0.98 16 30 H 0.07 1.06 7.72 -2.39 -0.02 1.05 16 31 H 0.11 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.17 2.16 6.47 -2.91 -0.02 2.14 16 33 H 0.19 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.18 3.76 8.04 -2.91 -0.02 3.74 16 35 H 0.06 2.05 7.93 -2.39 -0.02 2.03 16 36 H 0.08 2.42 8.02 -2.39 -0.02 2.40 16 37 H 0.40 15.94 8.35 -92.71 -0.77 15.16 16 38 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.09 4.54 7.89 -2.91 -0.02 4.52 16 40 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 42 H 0.14 4.24 8.06 -2.91 -0.02 4.21 16 43 H 0.11 4.76 7.96 -2.91 -0.02 4.74 16 Total: -1.00 -68.70 371.70 2.97 -65.72 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: 0.26 Total: 39.65 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 5.93 Total: -13.68 kcal Atomic # 7 Polarization: -90.35 SS G_CDS: -4.30 Total: -94.65 kcal Atomic # 8 Polarization: -39.35 SS G_CDS: -0.94 Total: -40.29 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.03 Total: 43.24 kcal Total: -68.70 2.97 -65.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361471525.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.719 kcal (2) G-P(sol) polarization free energy of solvation -68.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds