Wall clock time and date at job start Tue Mar 31 2020 14:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35671 * 117.00232 * 2 1 4 4 C 1.38919 * 119.68539 * 180.25110 * 3 2 1 5 5 C 1.38381 * 119.11127 * 180.31486 * 4 3 2 6 6 C 1.50701 * 120.75651 * 179.71400 * 5 4 3 7 7 C 1.53002 * 109.47098 * 269.72413 * 6 5 4 8 8 N 1.46501 * 109.46944 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99732 * 179.72553 * 8 7 6 10 10 O 1.21550 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.47887 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.39920 * 120.02522 * 359.72771 * 11 9 8 13 13 C 1.38325 * 120.35808 * 179.74058 * 12 11 9 14 14 C 1.37751 * 120.41275 * 0.55455 * 13 12 11 15 15 C 1.40754 * 120.03901 * 359.70336 * 14 13 12 16 16 C 1.41436 * 120.17684 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99682 * 24.43043 * 16 15 14 18 18 C 1.39934 * 120.00166 * 204.42725 * 16 15 14 19 19 N 1.30830 * 119.99468 * 17.89512 * 18 16 15 20 20 Si 1.86798 * 120.00254 * 197.89335 * 18 16 15 21 21 H 1.48499 * 109.46834 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47233 * 120.00368 * 20 18 16 23 23 H 1.48505 * 109.46748 * 240.00274 * 20 18 16 24 24 C 1.38998 * 120.02811 * 179.97438 * 11 9 8 25 25 C 1.38832 * 118.48353 * 359.44732 * 5 4 3 26 26 C 1.38048 * 119.29161 * 0.26953 * 25 5 4 27 27 N 1.31970 * 120.83120 * 0.02562 * 26 25 5 28 28 H 1.09005 * 109.47202 * 59.99740 * 1 2 3 29 29 H 1.08998 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47060 * 300.00139 * 1 2 3 31 31 H 1.07994 * 120.44469 * 0.03830 * 4 3 2 32 32 H 1.09001 * 109.46949 * 149.72870 * 6 5 4 33 33 H 1.08994 * 109.47261 * 29.72627 * 6 5 4 34 34 H 1.09001 * 109.46847 * 60.00395 * 7 6 5 35 35 H 1.09002 * 109.46996 * 300.00017 * 7 6 5 36 36 H 0.97000 * 120.00145 * 0.02562 * 8 7 6 37 37 H 1.08005 * 119.81739 * 359.97438 * 12 11 9 38 38 H 1.08004 * 119.79504 * 180.27765 * 13 12 11 39 39 H 1.07997 * 119.98140 * 179.71995 * 14 13 12 40 40 H 0.97003 * 119.99723 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.20084 * 359.95347 * 24 11 9 42 42 H 1.07999 * 120.35436 * 180.29531 * 25 5 4 43 43 H 1.07992 * 119.58558 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0053 5 6 4.0486 2.5130 0.0014 6 6 5.5513 2.6267 0.0025 7 6 6.0589 2.6645 1.4454 8 7 7.5196 2.7757 1.4463 9 6 8.1903 2.8317 2.6140 10 8 7.5833 2.7895 3.6662 11 6 9.6650 2.9433 2.6151 12 6 10.3649 2.9851 1.4042 13 6 11.7437 3.0948 1.3971 14 6 12.4448 3.1527 2.5815 15 6 11.7584 3.1067 3.8095 16 6 12.4752 3.1665 5.0273 17 1 13.4511 3.6282 5.0573 18 6 11.9200 2.6274 6.1932 19 7 10.9300 1.7759 6.1130 20 14 12.5924 3.1236 7.8638 21 1 13.7034 4.0921 7.6824 22 1 11.5122 3.7530 8.6651 23 1 13.0967 1.9195 8.5719 24 6 10.3573 3.0016 3.8190 25 6 3.2505 3.6490 0.0015 26 6 1.8771 3.5097 0.0005 27 7 1.3186 2.3140 0.0001 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0228 0.3695 -0.0100 32 1 5.8467 3.5419 -0.5107 33 1 5.9811 1.7670 -0.5115 34 1 5.7634 1.7494 1.9585 35 1 5.6290 3.5243 1.9593 36 1 8.0038 2.8133 0.6066 37 1 9.8252 2.9352 0.4700 38 1 12.2744 3.1308 0.4571 39 1 13.5216 3.2338 2.5678 40 1 10.5449 1.4025 6.9213 41 1 9.8214 2.9664 4.7560 42 1 3.6994 4.6313 0.0018 43 1 1.2519 4.3902 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361601483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:37 Heat of formation + Delta-G solvation = -28.040914 kcal Electronic energy + Delta-G solvation = -25473.285250 eV Core-core repulsion = 21676.120490 eV Total energy + Delta-G solvation = -3797.164760 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.91171 -39.25202 -38.29520 -37.07699 -35.52379 -33.80712 -33.26114 -31.03191 -30.49137 -29.47339 -29.00003 -27.42791 -25.38507 -24.35371 -23.64314 -22.14834 -21.54583 -20.90608 -19.59353 -18.15096 -17.65694 -17.37084 -16.34411 -16.21409 -16.17231 -15.59627 -15.30314 -15.06928 -14.66349 -14.58624 -14.43208 -13.89905 -13.59804 -13.34160 -13.28373 -12.92277 -12.67115 -12.51582 -12.40842 -12.21604 -12.02768 -11.67917 -11.46063 -11.39966 -11.16208 -11.08043 -10.74920 -10.49891 -10.04898 -9.94133 -9.88577 -9.70335 -9.23384 -9.04600 -8.79572 -8.70500 -7.64930 -7.53865 -6.81671 -4.42789 0.88124 0.97294 2.19037 2.79377 2.80742 3.07357 3.12133 3.13944 3.43970 3.64409 3.84939 3.91233 4.04295 4.46726 4.62143 4.66028 4.82012 4.85438 4.90076 4.98654 5.02284 5.10322 5.31192 5.36946 5.48055 5.58664 5.62526 5.65844 5.75564 5.98431 6.07193 6.09847 6.17101 6.25255 6.70322 6.79634 6.96138 6.97187 6.99915 7.19680 7.36426 7.57564 7.68176 7.73619 7.90820 8.06331 8.17270 8.49181 8.78814 8.81852 8.92156 10.13031 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002115 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.887014 B =13234.330590 C =14018.713966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.184 4.184 5 C 0.002 3.998 6 C -0.095 4.095 7 C 0.129 3.871 8 N -0.738 5.738 9 C 0.564 3.436 10 O -0.545 6.545 11 C -0.128 4.128 12 C -0.219 4.219 13 C -0.097 4.097 14 C -0.212 4.212 15 C 0.098 3.902 16 C -0.459 4.459 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.782 5.782 20 Si 0.910 3.090 21 H -0.260 1.260 22 H -0.270 1.270 23 H -0.274 1.274 24 C -0.093 4.093 25 C -0.204 4.204 26 C 0.139 3.861 27 N -0.545 5.545 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.284 0.716 41 H 0.134 0.866 42 H 0.139 0.861 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.790 0.568 -12.740 20.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.205 4.205 5 C -0.006 4.006 6 C -0.132 4.132 7 C 0.004 3.996 8 N -0.393 5.393 9 C 0.355 3.645 10 O -0.423 6.423 11 C -0.131 4.131 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.232 4.232 15 C 0.095 3.905 16 C -0.488 4.488 17 H 0.100 0.900 18 C -0.147 4.147 19 N -0.407 5.407 20 Si 0.734 3.266 21 H -0.183 1.183 22 H -0.195 1.195 23 H -0.199 1.199 24 C -0.113 4.113 25 C -0.225 4.225 26 C -0.016 4.016 27 N -0.269 5.269 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.106 0.894 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.095 0.905 41 H 0.152 0.848 42 H 0.157 0.843 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -17.204 0.009 -11.817 20.872 hybrid contribution 1.029 0.267 0.285 1.100 sum -16.175 0.276 -11.532 19.867 Atomic orbital electron populations 1.22850 0.77234 1.02930 1.02409 1.86247 1.22917 1.24591 1.87804 1.19804 0.89295 0.84701 0.92053 1.20987 0.92007 0.99256 1.08257 1.19912 0.95826 0.92078 0.92821 1.20857 0.90037 1.04476 0.97861 1.21127 0.81205 1.02575 0.94676 1.45923 1.06355 1.77568 1.09445 1.18854 0.88394 0.74648 0.82631 1.90706 1.70246 1.49886 1.31430 1.19459 0.90038 1.08288 0.95342 1.20329 0.94250 1.14699 0.94619 1.20434 0.93681 1.00832 0.96633 1.21101 0.97882 1.11795 0.92424 1.17612 0.91444 0.88856 0.92546 1.19623 1.03788 1.33279 0.92080 0.90011 1.25978 0.94163 0.92806 1.01722 1.69800 1.19837 1.19419 1.31602 0.86235 0.79898 0.79490 0.81002 1.18319 1.19540 1.19907 1.21646 0.94013 0.99360 0.96247 1.21943 0.94716 0.99589 1.06206 1.22374 0.92780 0.93589 0.92827 1.67302 1.41061 0.98889 1.19670 0.92375 0.88639 0.92279 0.83936 0.89352 0.89447 0.91511 0.91531 0.76487 0.89226 0.88891 0.88608 0.90461 0.84839 0.84274 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.43 10.48 -18.71 -0.20 -3.62 16 3 C 0.32 3.71 7.49 -17.12 -0.13 3.59 16 4 C -0.18 -1.97 9.74 -39.28 -0.38 -2.36 16 5 C 0.00 0.02 5.17 -104.35 -0.54 -0.52 16 6 C -0.09 -0.86 5.51 -27.88 -0.15 -1.02 16 7 C 0.13 1.69 5.66 -4.04 -0.02 1.67 16 8 N -0.74 -11.61 5.51 -61.23 -0.34 -11.95 16 9 C 0.56 12.17 7.77 -12.31 -0.10 12.07 16 10 O -0.54 -13.68 16.33 5.32 0.09 -13.59 16 11 C -0.13 -2.98 5.87 -105.04 -0.62 -3.60 16 12 C -0.22 -4.49 9.55 -38.92 -0.37 -4.86 16 13 C -0.10 -2.04 10.01 -39.73 -0.40 -2.44 16 14 C -0.21 -4.98 9.78 -38.81 -0.38 -5.36 16 15 C 0.10 2.58 5.57 -106.87 -0.60 1.98 16 16 C -0.46 -12.00 9.05 -37.73 -0.34 -12.34 16 17 H 0.08 2.03 7.91 -52.49 -0.42 1.62 16 18 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 19 N -0.78 -20.72 10.96 55.55 0.61 -20.11 16 20 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 21 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.09 -2.46 8.24 -38.44 -0.32 -2.77 16 25 C -0.20 -1.81 9.81 -39.43 -0.39 -2.19 16 26 C 0.14 1.27 11.18 -17.56 -0.20 1.07 16 27 N -0.55 -6.07 9.22 -13.33 -0.12 -6.20 16 28 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.09 0.68 8.10 -51.93 -0.42 0.25 16 33 H 0.09 0.71 8.10 -51.93 -0.42 0.29 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.40 5.24 6.49 -40.82 -0.26 4.98 16 37 H 0.09 1.48 6.38 -52.48 -0.33 1.15 16 38 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 39 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 40 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 41 H 0.13 3.85 5.74 -52.48 -0.30 3.55 16 42 H 0.14 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -31.85 371.25 -8.88 -40.73 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -5.52 Total: 9.43 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -3.96 Total: -13.97 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: 0.15 Total: -38.26 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.11 Total: -17.21 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.85 -8.88 -40.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361601483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.689 kcal (2) G-P(sol) polarization free energy of solvation -31.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds