Wall clock time and date at job start Tue Mar 31 2020 14:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35671 * 117.00232 * 2 1 4 4 C 1.38919 * 119.68539 * 180.25110 * 3 2 1 5 5 C 1.38381 * 119.11127 * 180.31486 * 4 3 2 6 6 C 1.50701 * 120.75651 * 179.71400 * 5 4 3 7 7 C 1.53002 * 109.47098 * 269.72413 * 6 5 4 8 8 N 1.46501 * 109.46944 * 180.02562 * 7 6 5 9 9 C 1.34772 * 119.99732 * 179.72553 * 8 7 6 10 10 O 1.21550 * 120.00111 * 0.02562 * 9 8 7 11 11 C 1.47887 * 120.00011 * 179.97438 * 9 8 7 12 12 C 1.39920 * 120.02522 * 359.72771 * 11 9 8 13 13 C 1.38325 * 120.35808 * 179.74058 * 12 11 9 14 14 C 1.37751 * 120.41275 * 0.55455 * 13 12 11 15 15 C 1.40754 * 120.03901 * 359.70336 * 14 13 12 16 16 C 1.41436 * 120.17684 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99682 * 24.43043 * 16 15 14 18 18 C 1.39934 * 120.00166 * 204.42725 * 16 15 14 19 19 N 1.30830 * 119.99468 * 17.89512 * 18 16 15 20 20 Si 1.86798 * 120.00254 * 197.89335 * 18 16 15 21 21 H 1.48499 * 109.46834 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47233 * 120.00368 * 20 18 16 23 23 H 1.48505 * 109.46748 * 240.00274 * 20 18 16 24 24 C 1.38998 * 120.02811 * 179.97438 * 11 9 8 25 25 C 1.38832 * 118.48353 * 359.44732 * 5 4 3 26 26 C 1.38048 * 119.29161 * 0.26953 * 25 5 4 27 27 N 1.31970 * 120.83120 * 0.02562 * 26 25 5 28 28 H 1.09005 * 109.47202 * 59.99740 * 1 2 3 29 29 H 1.08998 * 109.47410 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47060 * 300.00139 * 1 2 3 31 31 H 1.07994 * 120.44469 * 0.03830 * 4 3 2 32 32 H 1.09001 * 109.46949 * 149.72870 * 6 5 4 33 33 H 1.08994 * 109.47261 * 29.72627 * 6 5 4 34 34 H 1.09001 * 109.46847 * 60.00395 * 7 6 5 35 35 H 1.09002 * 109.46996 * 300.00017 * 7 6 5 36 36 H 0.97000 * 120.00145 * 0.02562 * 8 7 6 37 37 H 1.08005 * 119.81739 * 359.97438 * 12 11 9 38 38 H 1.08004 * 119.79504 * 180.27765 * 13 12 11 39 39 H 1.07997 * 119.98140 * 179.71995 * 14 13 12 40 40 H 0.97003 * 119.99723 * 180.02562 * 19 18 16 41 41 H 1.08003 * 120.20084 * 359.95347 * 24 11 9 42 42 H 1.07999 * 120.35436 * 180.29531 * 25 5 4 43 43 H 1.07992 * 119.58558 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 3.4326 1.2738 -0.0053 5 6 4.0486 2.5130 0.0014 6 6 5.5513 2.6267 0.0025 7 6 6.0589 2.6645 1.4454 8 7 7.5196 2.7757 1.4463 9 6 8.1903 2.8317 2.6140 10 8 7.5833 2.7895 3.6662 11 6 9.6650 2.9433 2.6151 12 6 10.3649 2.9851 1.4042 13 6 11.7437 3.0948 1.3971 14 6 12.4448 3.1527 2.5815 15 6 11.7584 3.1067 3.8095 16 6 12.4752 3.1665 5.0273 17 1 13.4511 3.6282 5.0573 18 6 11.9200 2.6274 6.1932 19 7 10.9300 1.7759 6.1130 20 14 12.5924 3.1236 7.8638 21 1 13.7034 4.0921 7.6824 22 1 11.5122 3.7530 8.6651 23 1 13.0967 1.9195 8.5719 24 6 10.3573 3.0016 3.8190 25 6 3.2505 3.6490 0.0015 26 6 1.8771 3.5097 0.0005 27 7 1.3186 2.3140 0.0001 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0228 0.3695 -0.0100 32 1 5.8467 3.5419 -0.5107 33 1 5.9811 1.7670 -0.5115 34 1 5.7634 1.7494 1.9585 35 1 5.6290 3.5243 1.9593 36 1 8.0038 2.8133 0.6066 37 1 9.8252 2.9352 0.4700 38 1 12.2744 3.1308 0.4571 39 1 13.5216 3.2338 2.5678 40 1 10.5449 1.4025 6.9213 41 1 9.8214 2.9664 4.7560 42 1 3.6994 4.6313 0.0018 43 1 1.2519 4.3902 0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361601483.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:36 Heat of formation + Delta-G solvation = -49.330896 kcal Electronic energy + Delta-G solvation = -25474.208453 eV Core-core repulsion = 21676.120490 eV Total energy + Delta-G solvation = -3798.087963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.66085 -40.87783 -39.11052 -38.78462 -36.70877 -35.60741 -34.43981 -32.18295 -31.71110 -31.27090 -30.12686 -28.12470 -27.20873 -25.52505 -24.41066 -23.61790 -22.78702 -22.35570 -21.19931 -19.56171 -18.79137 -18.13397 -17.94023 -17.19772 -17.00277 -16.87387 -16.73470 -16.42531 -16.38251 -15.52868 -15.41463 -15.21052 -14.99670 -14.59014 -14.53568 -14.33643 -14.24047 -13.73047 -13.48069 -13.18783 -13.11870 -12.94151 -12.78938 -12.71370 -12.53303 -12.22923 -12.17518 -12.14813 -11.89824 -11.49024 -11.07955 -10.88610 -10.67498 -10.59808 -10.16934 -9.51504 -9.45802 -9.37008 -8.66638 -6.37597 0.14307 0.22018 0.39022 1.01477 1.36285 1.46800 1.52542 2.08796 2.10617 2.19200 2.26135 2.75705 2.79180 3.35301 3.70722 3.71286 3.90083 3.95219 4.10482 4.14282 4.15509 4.35750 4.40746 4.42795 4.44981 4.53767 4.62128 4.70515 4.76150 4.86752 4.89417 4.93863 5.03378 5.10026 5.21040 5.32358 5.36575 5.43477 5.48339 5.53367 5.88013 5.93883 6.06724 6.23001 6.30115 6.52402 6.70334 6.83739 6.88659 6.95744 7.32064 8.30222 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002115 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.887014 B =13234.330590 C =14018.713966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.326 6.326 3 C 0.298 3.702 4 C -0.198 4.198 5 C -0.005 4.005 6 C -0.079 4.079 7 C 0.128 3.872 8 N -0.710 5.710 9 C 0.560 3.440 10 O -0.592 6.592 11 C -0.139 4.139 12 C -0.194 4.194 13 C -0.096 4.096 14 C -0.217 4.217 15 C 0.065 3.935 16 C -0.497 4.497 17 H 0.084 0.916 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.982 3.018 21 H -0.250 1.250 22 H -0.271 1.271 23 H -0.264 1.264 24 C -0.133 4.133 25 C -0.201 4.201 26 C 0.132 3.868 27 N -0.560 5.560 28 H 0.059 0.941 29 H 0.120 0.880 30 H 0.053 0.947 31 H 0.146 0.854 32 H 0.114 0.886 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.417 0.583 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.108 0.892 40 H 0.286 0.714 41 H 0.097 0.903 42 H 0.164 0.836 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 1.525 -15.587 22.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.233 6.233 3 C 0.120 3.880 4 C -0.218 4.218 5 C -0.013 4.013 6 C -0.117 4.117 7 C 0.004 3.996 8 N -0.364 5.364 9 C 0.350 3.650 10 O -0.473 6.473 11 C -0.142 4.142 12 C -0.214 4.214 13 C -0.114 4.114 14 C -0.237 4.237 15 C 0.063 3.937 16 C -0.526 4.526 17 H 0.102 0.898 18 C -0.187 4.187 19 N -0.452 5.452 20 Si 0.803 3.197 21 H -0.174 1.174 22 H -0.196 1.196 23 H -0.189 1.189 24 C -0.154 4.154 25 C -0.221 4.221 26 C -0.023 4.023 27 N -0.285 5.285 28 H 0.078 0.922 29 H 0.138 0.862 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.133 0.867 33 H 0.121 0.879 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.255 0.745 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.126 0.874 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.182 0.818 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -17.147 0.965 -14.741 22.633 hybrid contribution 0.904 -0.007 0.924 1.293 sum -16.244 0.958 -13.817 21.347 Atomic orbital electron populations 1.23024 0.75912 1.04507 1.02190 1.86217 1.24372 1.24813 1.87941 1.20057 0.89860 0.85037 0.93036 1.21169 0.91971 1.00028 1.08665 1.20029 0.96217 0.92055 0.93007 1.20766 0.89423 1.06572 0.94899 1.21248 0.79248 1.01474 0.97613 1.45659 1.07527 1.74987 1.08233 1.18750 0.88005 0.74737 0.83553 1.90684 1.70853 1.52253 1.33541 1.19778 0.91380 1.07575 0.95503 1.20892 0.94518 1.10666 0.95330 1.20947 0.94048 0.98888 0.97498 1.21422 0.98793 1.10886 0.92570 1.17960 0.91735 0.90017 0.94011 1.19883 1.04426 1.35007 0.93311 0.89818 1.26863 0.94230 0.92198 1.05385 1.69902 1.21706 1.21073 1.32494 0.85160 0.79195 0.79387 0.76005 1.17356 1.19608 1.18907 1.21452 0.94475 1.03101 0.96355 1.22266 0.94630 1.00392 1.04813 1.22938 0.93609 0.93801 0.91960 1.67332 1.41614 0.99470 1.20081 0.92249 0.86228 0.92773 0.83620 0.86743 0.87916 0.93220 0.92202 0.74470 0.84028 0.84185 0.87415 0.90377 0.88502 0.81825 0.79495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.38 113.37 1.18 1.77 16 2 O -0.33 -7.23 10.48 -89.88 -0.94 -8.17 16 3 C 0.30 6.81 7.49 84.79 0.63 7.44 16 4 C -0.20 -4.05 9.74 22.47 0.22 -3.83 16 5 C 0.00 -0.08 5.17 -19.69 -0.10 -0.19 16 6 C -0.08 -1.17 5.51 29.85 0.16 -1.01 16 7 C 0.13 3.13 5.66 86.38 0.49 3.62 16 8 N -0.71 -20.58 5.51 -465.93 -2.57 -23.14 16 9 C 0.56 24.02 7.77 86.80 0.67 24.70 16 10 O -0.59 -30.82 16.33 -3.87 -0.06 -30.88 16 11 C -0.14 -6.44 5.87 -20.13 -0.12 -6.56 16 12 C -0.19 -7.26 9.55 22.70 0.22 -7.05 16 13 C -0.10 -3.66 10.01 22.18 0.22 -3.44 16 14 C -0.22 -9.99 9.78 22.77 0.22 -9.76 16 15 C 0.06 3.52 5.57 -21.32 -0.12 3.41 16 16 C -0.50 -27.13 9.05 23.47 0.21 -26.92 16 17 H 0.08 4.31 7.91 -2.91 -0.02 4.29 16 18 C 0.03 1.47 5.14 85.25 0.44 1.91 16 19 N -0.83 -46.51 10.96 21.82 0.24 -46.27 16 20 Si 0.98 39.92 29.60 68.60 2.03 41.95 16 21 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 22 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 C -0.13 -7.38 8.24 23.01 0.19 -7.20 16 25 C -0.20 -3.01 9.81 22.37 0.22 -2.80 16 26 C 0.13 2.14 11.18 84.63 0.95 3.08 16 27 N -0.56 -11.99 9.22 -308.96 -2.85 -14.84 16 28 H 0.06 0.87 8.10 -2.38 -0.02 0.85 16 29 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 32 H 0.11 1.16 8.10 -2.39 -0.02 1.14 16 33 H 0.10 1.26 8.10 -2.39 -0.02 1.24 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 36 H 0.42 9.00 6.49 -92.71 -0.60 8.40 16 37 H 0.14 3.77 6.38 -2.91 -0.02 3.75 16 38 H 0.14 4.08 8.06 -2.91 -0.02 4.05 16 39 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.29 14.82 8.30 -92.71 -0.77 14.05 16 41 H 0.10 6.03 5.74 -2.91 -0.02 6.01 16 42 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 43 H 0.19 1.78 8.06 -2.91 -0.02 1.75 16 Total: -1.00 -75.47 371.25 1.98 -73.50 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: 0.44 Total: 30.69 kcal Atomic # 6 Polarization: -28.51 SS G_CDS: 5.69 Total: -22.82 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -5.17 Total: -84.25 kcal Atomic # 8 Polarization: -38.05 SS G_CDS: -1.00 Total: -39.06 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -75.47 1.98 -73.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361601483.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.166 kcal (2) G-P(sol) polarization free energy of solvation -75.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds