Wall clock time and date at job start Tue Mar 31 2020 14:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 117.00221 * 2 1 4 4 C 1.39138 * 120.47228 * 0.02562 * 3 2 1 5 5 C 1.38533 * 118.37307 * 179.97438 * 4 3 2 6 6 C 1.38250 * 119.22487 * 359.97438 * 5 4 3 7 7 N 1.31851 * 120.88275 * 0.02562 * 6 5 4 8 8 C 1.31841 * 121.78186 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.65892 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47083 * 89.99880 * 9 8 7 11 11 C 1.34777 * 119.99867 * 180.02562 * 10 9 8 12 12 O 1.21277 * 120.00233 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99867 * 180.02562 * 11 10 9 14 14 H 1.08997 * 109.46937 * 299.99858 * 13 11 10 15 15 C 1.50699 * 109.47323 * 59.99776 * 13 11 10 16 16 H 1.07994 * 119.99845 * 33.93692 * 15 13 11 17 17 C 1.37876 * 120.00041 * 213.94147 * 15 13 11 18 18 N 1.31513 * 120.00195 * 6.39252 * 17 15 13 19 19 Si 1.86800 * 119.99961 * 186.39272 * 17 15 13 20 20 H 1.48502 * 109.47118 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47254 * 119.99477 * 19 17 15 22 22 H 1.48501 * 109.47189 * 239.99810 * 19 17 15 23 23 C 1.50698 * 109.47084 * 179.97438 * 13 11 10 24 24 C 1.38234 * 120.00055 * 293.84504 * 23 13 11 25 25 C 1.38237 * 119.99668 * 179.80810 * 24 23 13 26 26 C 1.38232 * 120.00465 * 0.39862 * 25 24 23 27 27 C 1.38237 * 119.99496 * 359.86001 * 26 25 24 28 28 C 1.38228 * 120.00459 * 359.95167 * 27 26 25 29 29 H 1.08999 * 109.47162 * 59.99711 * 1 2 3 30 30 H 1.08994 * 109.47295 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.47050 * 299.99932 * 1 2 3 32 32 H 1.08000 * 120.81694 * 0.25572 * 4 3 2 33 33 H 1.08005 * 120.38893 * 180.02562 * 5 4 3 34 34 H 1.08003 * 119.56211 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47273 * 210.00025 * 9 8 7 36 36 H 1.09005 * 109.46804 * 330.00192 * 9 8 7 37 37 H 0.96998 * 119.99933 * 359.97438 * 10 9 8 38 38 H 0.96996 * 119.99983 * 180.02562 * 18 17 15 39 39 H 1.07993 * 119.99970 * 0.02562 * 24 23 13 40 40 H 1.07999 * 119.99622 * 180.23332 * 25 24 23 41 41 H 1.07993 * 120.00395 * 179.82988 * 26 25 24 42 42 H 1.08005 * 119.99646 * 179.97438 * 27 26 25 43 43 H 1.07995 * 120.00205 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0005 5 6 1.9717 3.5945 0.0011 6 6 3.3542 3.5975 0.0016 7 7 4.0334 2.4674 0.0011 8 6 3.4305 1.2949 0.0005 9 6 4.2541 0.0329 0.0006 10 7 4.5205 -0.3764 1.3818 11 6 5.2451 -1.4858 1.6281 12 8 5.6761 -2.1456 0.7063 13 6 5.5186 -1.9071 3.0489 14 1 6.0645 -1.1165 3.5636 15 6 4.2132 -2.1599 3.7581 16 1 3.3731 -2.5661 3.2144 17 6 4.0913 -1.8726 5.1011 18 7 5.0693 -1.2627 5.7345 19 14 2.5371 -2.3497 6.0210 20 1 1.5953 -3.0189 5.0879 21 1 2.8819 -3.2783 7.1273 22 1 1.8981 -1.1307 6.5788 23 6 6.3423 -3.1691 3.0489 24 6 5.8036 -4.3461 2.5640 25 6 6.5606 -5.5028 2.5604 26 6 7.8534 -5.4843 3.0492 27 6 8.3903 -4.3084 3.5391 28 6 7.6348 -3.1509 3.5392 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 0.2185 2.3519 0.0051 33 1 1.4234 4.5250 0.0019 34 1 3.8851 4.5381 0.0016 35 1 3.7076 -0.7577 -0.5137 36 1 5.1983 0.2152 -0.5129 37 1 4.1761 0.1515 2.1190 38 1 4.9836 -1.0610 6.6793 39 1 4.7925 -4.3613 2.1848 40 1 6.1409 -6.4215 2.1781 41 1 8.4439 -6.3885 3.0489 42 1 9.4003 -4.2940 3.9214 43 1 8.0544 -2.2321 3.9215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361867162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:18 Heat of formation + Delta-G solvation = -15.284570 kcal Electronic energy + Delta-G solvation = -27135.766200 eV Core-core repulsion = 23339.154597 eV Total energy + Delta-G solvation = -3796.611603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.82279 -38.99264 -38.20944 -37.61215 -34.36362 -33.58170 -32.11182 -31.07903 -30.78330 -29.88445 -27.78142 -27.52332 -26.04814 -23.77198 -22.97075 -22.11785 -21.53597 -20.69033 -19.22568 -18.21522 -17.20955 -16.83958 -16.54224 -16.03943 -15.80881 -15.61237 -15.05236 -14.54255 -14.48302 -14.17015 -13.97527 -13.92421 -13.60505 -13.48669 -13.13852 -12.62472 -12.46919 -12.23762 -12.22755 -12.04754 -11.61148 -11.58030 -11.42956 -11.35700 -11.06226 -10.95002 -10.35397 -10.22540 -9.98926 -9.85596 -9.62830 -9.38160 -8.76586 -8.64116 -8.33473 -8.20809 -7.89295 -7.55668 -6.23738 -4.27758 0.94878 1.16670 2.42754 2.45819 3.07928 3.19547 3.28744 3.32134 3.57443 3.83151 4.18945 4.31855 4.43965 4.50307 4.58569 4.84713 4.89977 4.96891 5.01047 5.14223 5.14413 5.34339 5.44450 5.69857 5.76736 5.84365 5.88166 5.94084 6.02821 6.15178 6.27204 6.33614 6.44756 6.55803 6.65948 6.93455 7.03010 7.09441 7.23177 7.31038 7.41996 7.50227 7.68149 7.81770 7.92938 8.01516 8.13311 8.48733 8.76957 9.32905 9.38753 10.85137 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.004034 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.634665 B = 6940.051410 C = 7923.867110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.296 6.296 3 C 0.098 3.902 4 C -0.170 4.170 5 C -0.131 4.131 6 C 0.057 3.943 7 N -0.432 5.432 8 C 0.092 3.908 9 C 0.181 3.819 10 N -0.719 5.719 11 C 0.531 3.469 12 O -0.568 6.568 13 C 0.049 3.951 14 H 0.092 0.908 15 C -0.510 4.510 16 H 0.063 0.937 17 C 0.074 3.926 18 N -0.880 5.880 19 Si 0.895 3.105 20 H -0.271 1.271 21 H -0.281 1.281 22 H -0.283 1.283 23 C -0.010 4.010 24 C -0.084 4.084 25 C -0.135 4.135 26 C -0.149 4.149 27 C -0.132 4.132 28 C -0.120 4.120 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.159 0.841 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.405 0.595 38 H 0.266 0.734 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.586 7.061 -8.878 13.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.207 6.207 3 C 0.049 3.951 4 C -0.197 4.197 5 C -0.151 4.151 6 C -0.100 4.100 7 N -0.141 5.141 8 C -0.048 4.048 9 C 0.057 3.943 10 N -0.372 5.372 11 C 0.320 3.680 12 O -0.448 6.448 13 C 0.028 3.972 14 H 0.110 0.890 15 C -0.548 4.548 16 H 0.081 0.919 17 C -0.131 4.131 18 N -0.516 5.516 19 Si 0.723 3.277 20 H -0.195 1.195 21 H -0.207 1.207 22 H -0.209 1.209 23 C -0.011 4.011 24 C -0.102 4.102 25 C -0.153 4.153 26 C -0.167 4.167 27 C -0.150 4.150 28 C -0.138 4.138 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.075 0.925 32 H 0.157 0.843 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.244 6.480 -9.363 12.986 hybrid contribution -2.334 0.282 1.079 2.587 sum -8.578 6.762 -8.284 13.709 Atomic orbital electron populations 1.23133 0.78291 1.04539 1.01069 1.86239 1.21348 1.25425 1.87729 1.19975 0.93211 0.85349 0.96523 1.21695 1.00784 0.92138 1.05037 1.21992 0.95790 0.98163 0.99135 1.22658 0.91406 0.96455 0.99487 1.67577 1.39999 0.97465 1.09101 1.20836 0.88278 0.94336 1.01364 1.19811 0.98124 0.90110 0.86299 1.45813 1.56302 1.28615 1.06452 1.21574 0.75218 0.78367 0.92800 1.90576 1.52712 1.53991 1.47488 1.18135 0.97275 0.93380 0.88458 0.89028 1.20719 0.95551 1.44341 0.94198 0.91874 1.24953 0.96656 0.93819 0.97633 1.69893 1.32236 1.39030 1.10405 0.86477 0.82958 0.78384 0.79931 1.19493 1.20688 1.20947 1.20052 0.92255 0.96210 0.92592 1.20832 0.99150 0.92090 0.98139 1.20954 0.94850 0.97828 1.01675 1.20791 0.95994 0.97371 1.02583 1.20897 0.99103 0.93443 1.01592 1.21006 0.94330 0.97745 1.00730 0.92784 0.87764 0.92457 0.84298 0.84570 0.82414 0.90249 0.90513 0.76077 0.92449 0.87059 0.87615 0.87747 0.87575 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.83 101.05 0.99 1.22 16 2 O -0.30 -4.12 9.55 -19.45 -0.19 -4.30 16 3 C 0.10 1.36 6.67 -39.08 -0.26 1.10 16 4 C -0.17 -1.83 9.14 -39.14 -0.36 -2.18 16 5 C -0.13 -1.27 10.11 -39.47 -0.40 -1.67 16 6 C 0.06 0.66 11.18 -17.54 -0.20 0.46 16 7 N -0.43 -6.47 10.27 -9.35 -0.10 -6.57 16 8 C 0.09 1.43 6.16 -82.42 -0.51 0.92 16 9 C 0.18 3.21 5.74 -5.19 -0.03 3.18 16 10 N -0.72 -14.57 5.45 -61.47 -0.33 -14.91 16 11 C 0.53 12.39 7.04 -10.98 -0.08 12.32 16 12 O -0.57 -14.35 15.42 5.56 0.09 -14.26 16 13 C 0.05 1.19 2.44 -94.08 -0.23 0.96 16 14 H 0.09 2.40 7.00 -51.93 -0.36 2.03 16 15 C -0.51 -13.06 7.46 -34.44 -0.26 -13.32 16 16 H 0.06 1.64 7.82 -52.49 -0.41 1.23 16 17 C 0.07 1.91 5.45 -17.82 -0.10 1.81 16 18 N -0.88 -23.62 12.78 55.43 0.71 -22.92 16 19 Si 0.90 20.29 29.54 -169.99 -5.02 15.26 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.01 -0.24 4.30 -104.62 -0.45 -0.69 16 24 C -0.08 -1.94 8.31 -39.58 -0.33 -2.26 16 25 C -0.13 -2.73 10.05 -39.58 -0.40 -3.13 16 26 C -0.15 -2.84 10.05 -39.58 -0.40 -3.24 16 27 C -0.13 -2.62 10.05 -39.59 -0.40 -3.02 16 28 C -0.12 -2.70 9.67 -39.58 -0.38 -3.08 16 29 H 0.05 0.38 7.70 -51.93 -0.40 -0.02 16 30 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.47 7.69 -51.92 -0.40 0.07 16 32 H 0.14 1.10 6.45 -52.49 -0.34 0.76 16 33 H 0.14 0.87 8.06 -52.48 -0.42 0.44 16 34 H 0.16 1.35 8.06 -52.48 -0.42 0.92 16 35 H 0.08 1.43 7.52 -51.93 -0.39 1.04 16 36 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.40 8.18 8.35 -40.82 -0.34 7.84 16 38 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.11 2.59 7.89 -52.49 -0.41 2.18 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.40 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.78 8.06 -52.48 -0.42 1.36 16 43 H 0.11 2.44 7.96 -52.49 -0.42 2.02 16 LS Contribution 371.25 15.07 5.59 5.59 Total: -1.00 -31.40 371.25 -8.59 -39.99 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -5.57 Total: 12.72 kcal Atomic # 6 Polarization: -6.84 SS G_CDS: -3.77 Total: -10.61 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.28 Total: -44.39 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.10 Total: -18.57 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.40 -8.59 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361867162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.707 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds