Wall clock time and date at job start Tue Mar 31 2020 14:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 117.00221 * 2 1 4 4 C 1.39138 * 120.47228 * 0.02562 * 3 2 1 5 5 C 1.38533 * 118.37307 * 179.97438 * 4 3 2 6 6 C 1.38250 * 119.22487 * 359.97438 * 5 4 3 7 7 N 1.31851 * 120.88275 * 0.02562 * 6 5 4 8 8 C 1.31841 * 121.78186 * 359.97438 * 7 6 5 9 9 C 1.50698 * 119.65892 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47083 * 89.99880 * 9 8 7 11 11 C 1.34777 * 119.99867 * 180.02562 * 10 9 8 12 12 O 1.21277 * 120.00233 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99867 * 180.02562 * 11 10 9 14 14 H 1.08997 * 109.46937 * 299.99858 * 13 11 10 15 15 C 1.50699 * 109.47323 * 59.99776 * 13 11 10 16 16 H 1.07994 * 119.99845 * 33.93692 * 15 13 11 17 17 C 1.37876 * 120.00041 * 213.94147 * 15 13 11 18 18 N 1.31513 * 120.00195 * 6.39252 * 17 15 13 19 19 Si 1.86800 * 119.99961 * 186.39272 * 17 15 13 20 20 H 1.48502 * 109.47118 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47254 * 119.99477 * 19 17 15 22 22 H 1.48501 * 109.47189 * 239.99810 * 19 17 15 23 23 C 1.50698 * 109.47084 * 179.97438 * 13 11 10 24 24 C 1.38234 * 120.00055 * 293.84504 * 23 13 11 25 25 C 1.38237 * 119.99668 * 179.80810 * 24 23 13 26 26 C 1.38232 * 120.00465 * 0.39862 * 25 24 23 27 27 C 1.38237 * 119.99496 * 359.86001 * 26 25 24 28 28 C 1.38228 * 120.00459 * 359.95167 * 27 26 25 29 29 H 1.08999 * 109.47162 * 59.99711 * 1 2 3 30 30 H 1.08994 * 109.47295 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.47050 * 299.99932 * 1 2 3 32 32 H 1.08000 * 120.81694 * 0.25572 * 4 3 2 33 33 H 1.08005 * 120.38893 * 180.02562 * 5 4 3 34 34 H 1.08003 * 119.56211 * 179.97438 * 6 5 4 35 35 H 1.08997 * 109.47273 * 210.00025 * 9 8 7 36 36 H 1.09005 * 109.46804 * 330.00192 * 9 8 7 37 37 H 0.96998 * 119.99933 * 359.97438 * 10 9 8 38 38 H 0.96996 * 119.99983 * 180.02562 * 18 17 15 39 39 H 1.07993 * 119.99970 * 0.02562 * 24 23 13 40 40 H 1.07999 * 119.99622 * 180.23332 * 25 24 23 41 41 H 1.07993 * 120.00395 * 179.82988 * 26 25 24 42 42 H 1.08005 * 119.99646 * 179.97438 * 27 26 25 43 43 H 1.07995 * 120.00205 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0005 5 6 1.9717 3.5945 0.0011 6 6 3.3542 3.5975 0.0016 7 7 4.0334 2.4674 0.0011 8 6 3.4305 1.2949 0.0005 9 6 4.2541 0.0329 0.0006 10 7 4.5205 -0.3764 1.3818 11 6 5.2451 -1.4858 1.6281 12 8 5.6761 -2.1456 0.7063 13 6 5.5186 -1.9071 3.0489 14 1 6.0645 -1.1165 3.5636 15 6 4.2132 -2.1599 3.7581 16 1 3.3731 -2.5661 3.2144 17 6 4.0913 -1.8726 5.1011 18 7 5.0693 -1.2627 5.7345 19 14 2.5371 -2.3497 6.0210 20 1 1.5953 -3.0189 5.0879 21 1 2.8819 -3.2783 7.1273 22 1 1.8981 -1.1307 6.5788 23 6 6.3423 -3.1691 3.0489 24 6 5.8036 -4.3461 2.5640 25 6 6.5606 -5.5028 2.5604 26 6 7.8534 -5.4843 3.0492 27 6 8.3903 -4.3084 3.5391 28 6 7.6348 -3.1509 3.5392 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 0.2185 2.3519 0.0051 33 1 1.4234 4.5250 0.0019 34 1 3.8851 4.5381 0.0016 35 1 3.7076 -0.7577 -0.5137 36 1 5.1983 0.2152 -0.5129 37 1 4.1761 0.1515 2.1190 38 1 4.9836 -1.0610 6.6793 39 1 4.7925 -4.3613 2.1848 40 1 6.1409 -6.4215 2.1781 41 1 8.4439 -6.3885 3.0489 42 1 9.4003 -4.2940 3.9214 43 1 8.0544 -2.2321 3.9215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361867162.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:17 Heat of formation + Delta-G solvation = -35.143201 kcal Electronic energy + Delta-G solvation = -27136.627335 eV Core-core repulsion = 23339.154597 eV Total energy + Delta-G solvation = -3797.472738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.81068 -40.75799 -39.33565 -39.11436 -35.87879 -35.51680 -33.20660 -32.86537 -31.91406 -31.53705 -29.36774 -28.37054 -27.51490 -25.63526 -23.86605 -23.31293 -23.16691 -22.32713 -21.00915 -19.13841 -18.70383 -18.17526 -18.06389 -17.59791 -17.13306 -16.82021 -16.51488 -16.21742 -15.93082 -15.58224 -15.38740 -15.24051 -14.80368 -14.65308 -14.48378 -14.11836 -14.00435 -13.93497 -13.70987 -13.30754 -13.22741 -13.09136 -12.88087 -12.77321 -12.37747 -12.31415 -12.19823 -11.96328 -11.66797 -11.27521 -10.83595 -10.70717 -10.60045 -10.43287 -9.92724 -9.56169 -9.43343 -9.25296 -8.22553 -6.32527 -0.00554 0.26717 0.75369 0.80390 1.38209 1.41825 1.52360 1.94549 2.22854 2.40300 2.42665 2.92114 3.07309 3.21815 3.28726 3.58536 3.79235 4.05379 4.18222 4.23683 4.30480 4.31098 4.35749 4.39401 4.44748 4.51311 4.52868 4.59724 4.69870 4.77448 4.88200 4.97047 5.02851 5.09198 5.12505 5.36598 5.44794 5.48229 5.59800 5.64059 5.78361 5.83084 5.94416 6.22433 6.23665 6.40366 6.68852 6.76138 6.96989 7.33222 7.51141 8.86383 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011666 B = 0.004034 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2399.634665 B = 6940.051410 C = 7923.867110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.088 3.912 4 C -0.165 4.165 5 C -0.111 4.111 6 C 0.048 3.952 7 N -0.464 5.464 8 C 0.057 3.943 9 C 0.188 3.812 10 N -0.708 5.708 11 C 0.528 3.472 12 O -0.593 6.593 13 C 0.052 3.948 14 H 0.067 0.933 15 C -0.513 4.513 16 H 0.052 0.948 17 C 0.033 3.967 18 N -0.907 5.907 19 Si 0.954 3.046 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.273 1.273 23 C -0.040 4.040 24 C -0.109 4.109 25 C -0.134 4.134 26 C -0.142 4.142 27 C -0.129 4.129 28 C -0.145 4.145 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.068 0.932 32 H 0.173 0.827 33 H 0.182 0.818 34 H 0.187 0.813 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.404 0.596 38 H 0.267 0.733 39 H 0.095 0.905 40 H 0.137 0.863 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.011 7.433 -8.846 14.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.039 3.961 4 C -0.191 4.191 5 C -0.131 4.131 6 C -0.110 4.110 7 N -0.174 5.174 8 C -0.081 4.081 9 C 0.064 3.936 10 N -0.359 5.359 11 C 0.317 3.683 12 O -0.474 6.474 13 C 0.031 3.969 14 H 0.084 0.916 15 C -0.550 4.550 16 H 0.070 0.930 17 C -0.169 4.169 18 N -0.545 5.545 19 Si 0.779 3.221 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.199 1.199 23 C -0.041 4.041 24 C -0.128 4.128 25 C -0.152 4.152 26 C -0.160 4.160 27 C -0.147 4.147 28 C -0.163 4.163 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.086 0.914 32 H 0.190 0.810 33 H 0.199 0.801 34 H 0.204 0.796 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.238 0.762 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.155 0.845 41 H 0.167 0.833 42 H 0.159 0.841 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.688 6.861 -9.342 13.909 hybrid contribution -1.897 0.238 1.001 2.158 sum -9.586 7.099 -8.341 14.555 Atomic orbital electron populations 1.23426 0.76046 1.05655 1.02765 1.86192 1.23849 1.26135 1.87901 1.20055 0.92758 0.86496 0.96809 1.22120 1.02356 0.91167 1.03477 1.22491 0.95137 0.99557 0.95882 1.23268 0.92823 0.96239 0.98666 1.67457 1.41492 0.98226 1.10208 1.20388 0.89038 0.93528 1.05157 1.19713 0.97952 0.91699 0.84225 1.45762 1.54906 1.27400 1.07818 1.21456 0.75562 0.79002 0.92243 1.90535 1.53995 1.55013 1.47894 1.18012 0.96897 0.93335 0.88673 0.91554 1.20738 0.95624 1.44129 0.94538 0.92992 1.25611 0.99367 0.93732 0.98179 1.69997 1.33870 1.39976 1.10616 0.85562 0.79749 0.78255 0.78507 1.19204 1.20799 1.19878 1.20115 0.93301 0.96223 0.94438 1.20851 0.99120 0.93180 0.99606 1.21340 0.95273 0.97835 1.00758 1.21288 0.95629 0.98597 1.00454 1.21307 1.00285 0.92613 1.00453 1.21150 0.94393 0.99006 1.01760 0.90286 0.87167 0.91377 0.80970 0.80092 0.79639 0.91236 0.91758 0.76194 0.92343 0.88687 0.84473 0.83331 0.84123 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.83 113.37 1.11 1.37 16 2 O -0.33 -9.23 9.55 -92.53 -0.88 -10.11 16 3 C 0.09 2.40 6.67 22.60 0.15 2.55 16 4 C -0.16 -3.09 9.14 22.56 0.21 -2.88 16 5 C -0.11 -1.76 10.11 22.34 0.23 -1.54 16 6 C 0.05 1.02 11.18 84.69 0.95 1.97 16 7 N -0.46 -14.09 10.27 -183.51 -1.88 -15.97 16 8 C 0.06 1.84 6.16 42.67 0.26 2.10 16 9 C 0.19 7.21 5.74 85.63 0.49 7.70 16 10 N -0.71 -30.85 5.45 -466.79 -2.54 -33.39 16 11 C 0.53 26.40 7.04 87.66 0.62 27.01 16 12 O -0.59 -31.83 15.42 -3.02 -0.05 -31.88 16 13 C 0.05 2.72 2.44 -13.03 -0.03 2.69 16 14 H 0.07 3.74 7.00 -2.39 -0.02 3.72 16 15 C -0.51 -27.43 7.46 25.60 0.19 -27.24 16 16 H 0.05 2.83 7.82 -2.91 -0.02 2.81 16 17 C 0.03 1.73 5.45 84.65 0.46 2.19 16 18 N -0.91 -50.22 12.78 21.45 0.27 -49.95 16 19 Si 0.95 42.14 29.54 68.60 2.03 44.17 16 20 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 21 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C -0.04 -2.00 4.30 -19.87 -0.09 -2.09 16 24 C -0.11 -5.18 8.31 22.27 0.19 -4.99 16 25 C -0.13 -5.25 10.05 22.27 0.22 -5.02 16 26 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 27 C -0.13 -4.91 10.05 22.27 0.22 -4.68 16 28 C -0.14 -6.68 9.67 22.27 0.22 -6.47 16 29 H 0.08 0.91 7.70 -2.39 -0.02 0.90 16 30 H 0.11 1.67 8.14 -2.39 -0.02 1.66 16 31 H 0.07 0.98 7.69 -2.38 -0.02 0.97 16 32 H 0.17 1.99 6.45 -2.91 -0.02 1.97 16 33 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 34 H 0.19 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.07 2.74 7.52 -2.39 -0.02 2.72 16 36 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.40 17.53 8.35 -92.71 -0.77 16.76 16 38 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 39 H 0.09 4.67 7.89 -2.91 -0.02 4.64 16 40 H 0.14 4.40 8.06 -2.91 -0.02 4.37 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 43 H 0.11 4.84 7.96 -2.91 -0.02 4.82 16 Total: -1.00 -72.35 371.25 2.83 -69.53 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: 0.26 Total: 39.73 kcal Atomic # 6 Polarization: -17.74 SS G_CDS: 5.62 Total: -12.12 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -4.15 Total: -99.31 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.93 Total: -41.99 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -72.35 2.83 -69.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361867162.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.383 kcal (2) G-P(sol) polarization free energy of solvation -72.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds