Wall clock time and date at job start Tue Mar 31 2020 14:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38875 * 120.00149 * 2 1 4 4 C 1.38960 * 120.17333 * 354.50767 * 3 2 1 5 5 C 1.37946 * 120.06327 * 180.02562 * 4 3 2 6 6 C 1.38616 * 120.42735 * 359.97326 * 5 4 3 7 7 C 1.37749 * 120.34903 * 0.02562 * 6 5 4 8 8 C 1.39735 * 119.92598 * 359.97438 * 7 6 5 9 9 C 1.47438 * 120.20590 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99826 * 185.77927 * 9 8 7 11 11 N 1.34770 * 120.00388 * 5.77323 * 9 8 7 12 12 C 1.46495 * 120.00264 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47116 * 180.02562 * 12 11 9 14 14 C 1.38302 * 119.93551 * 269.72920 * 13 12 11 15 15 C 1.38097 * 120.07028 * 179.72371 * 14 13 12 16 16 C 1.38879 * 119.93219 * 0.57438 * 15 14 13 17 17 O 1.35752 * 120.07300 * 179.68427 * 16 15 14 18 18 C 1.34827 * 117.00155 * 185.67117 * 17 16 15 19 19 H 1.08001 * 119.99880 * 354.92499 * 18 17 16 20 20 C 1.38652 * 120.00368 * 174.92817 * 18 17 16 21 21 N 1.31563 * 119.99658 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00262 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47124 * 90.00114 * 22 20 18 24 24 H 1.48501 * 109.46935 * 209.99680 * 22 20 18 25 25 H 1.48493 * 109.47338 * 330.00090 * 22 20 18 26 26 C 1.38886 * 119.86168 * 359.69731 * 16 15 14 27 27 C 1.38106 * 119.92938 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47083 * 299.99915 * 1 2 3 30 30 H 1.08999 * 109.47071 * 60.00080 * 1 2 3 31 31 H 0.97003 * 120.00000 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.96392 * 359.97358 * 4 3 2 33 33 H 1.08002 * 119.78925 * 180.02562 * 5 4 3 34 34 H 1.07993 * 119.82577 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.03493 * 179.72702 * 7 6 5 36 36 H 0.97004 * 119.99915 * 0.02562 * 11 9 8 37 37 H 1.08993 * 109.47712 * 300.00379 * 12 11 9 38 38 H 1.09007 * 109.46792 * 60.00771 * 12 11 9 39 39 H 1.08001 * 119.96275 * 359.97438 * 14 13 12 40 40 H 1.08001 * 120.03610 * 180.27509 * 15 14 13 41 41 H 0.96996 * 119.99771 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.03791 * 179.97438 * 26 16 15 43 43 H 1.07990 * 119.96424 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1593 1.2027 0.0000 4 6 1.4730 2.4055 -0.1150 5 6 2.1651 3.5987 -0.1153 6 6 3.5465 3.6091 -0.0007 7 6 4.2442 2.4270 0.1142 8 6 3.5580 1.2098 0.1162 9 6 4.2987 -0.0592 0.2383 10 8 3.7110 -1.1186 0.1343 11 7 5.6271 -0.0450 0.4652 12 6 6.3629 -1.3058 0.5871 13 6 7.8202 -1.0148 0.8374 14 6 8.6908 -0.8833 -0.2291 15 6 10.0257 -0.6109 -0.0031 16 6 10.4959 -0.4809 1.2971 17 8 11.8088 -0.2195 1.5227 18 6 12.2217 -0.2221 2.8062 19 1 11.5041 -0.3446 3.6040 20 6 13.5675 -0.0675 3.1019 21 7 14.4416 0.0813 2.1300 22 14 14.1394 -0.0703 4.8802 23 1 14.4632 -1.4594 5.2938 24 1 15.3495 0.7803 5.0123 25 1 13.0603 0.4658 5.7481 26 6 9.6202 -0.6191 2.3662 27 6 8.2853 -0.8857 2.1335 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 0.3967 2.4059 -0.2051 33 1 1.6271 4.5310 -0.2045 34 1 4.0784 4.5489 -0.0016 35 1 5.3208 2.4408 0.1988 36 1 6.0958 0.8002 0.5485 37 1 5.9599 -1.8828 1.4193 38 1 6.2594 -1.8775 -0.3353 39 1 8.3255 -0.9897 -1.2399 40 1 10.7042 -0.5040 -0.8366 41 1 15.3831 0.1891 2.3368 42 1 9.9829 -0.5189 3.3785 43 1 7.6040 -0.9937 2.9644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362214602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:23 Heat of formation + Delta-G solvation = -5.600311 kcal Electronic energy + Delta-G solvation = -25739.035576 eV Core-core repulsion = 21942.843914 eV Total energy + Delta-G solvation = -3796.191662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51543 -39.21649 -38.41478 -36.87452 -35.85774 -34.34103 -32.41339 -31.62630 -30.29649 -29.88476 -29.68591 -26.35778 -25.77832 -24.91037 -23.51380 -22.07269 -21.65090 -20.67468 -20.59417 -18.21441 -18.05846 -17.25193 -17.03099 -16.19956 -15.80081 -15.36355 -15.11444 -14.70972 -14.59490 -14.48911 -14.33668 -14.17559 -13.87855 -13.68649 -13.58499 -13.23881 -12.91068 -12.80107 -12.54870 -12.38839 -12.13632 -12.08737 -11.69720 -11.41784 -11.40907 -10.97795 -10.80777 -10.71515 -10.49696 -10.37753 -9.84707 -9.44586 -9.25624 -8.95351 -8.92123 -8.30386 -7.60395 -7.34634 -6.54168 -4.13056 0.81109 1.43485 2.04688 2.11366 2.84368 3.07144 3.08841 3.13582 3.35306 3.42191 3.81445 3.89453 4.47195 4.62312 4.67063 4.88930 4.91276 4.99981 5.12868 5.15528 5.19127 5.22913 5.27710 5.39802 5.40274 5.46008 5.64284 5.69677 5.78550 5.88460 5.96651 6.10801 6.17429 6.33102 6.37253 6.45870 6.58246 6.59588 6.78643 6.93968 7.11466 7.14065 7.25456 7.33631 7.54679 7.68770 7.72441 7.90501 8.27879 8.91157 9.59057 10.63294 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021882 B = 0.002141 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.266597 B =13076.182858 C =13504.984428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.732 5.732 3 C 0.274 3.726 4 C -0.216 4.216 5 C -0.044 4.044 6 C -0.193 4.193 7 C -0.033 4.033 8 C -0.227 4.227 9 C 0.568 3.432 10 O -0.562 6.562 11 N -0.714 5.714 12 C 0.179 3.821 13 C -0.216 4.216 14 C -0.054 4.054 15 C -0.195 4.195 16 C 0.161 3.839 17 O -0.173 6.173 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.859 5.859 22 Si 0.942 3.058 23 H -0.272 1.272 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.237 4.237 27 C -0.050 4.050 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.421 0.579 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.126 0.874 36 H 0.402 0.598 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.113 0.887 40 H 0.118 0.882 41 H 0.271 0.729 42 H 0.128 0.872 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.538 4.274 -3.350 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.371 5.371 3 C 0.163 3.837 4 C -0.238 4.238 5 C -0.063 4.063 6 C -0.213 4.213 7 C -0.052 4.052 8 C -0.235 4.235 9 C 0.359 3.641 10 O -0.444 6.444 11 N -0.364 5.364 12 C 0.057 3.943 13 C -0.218 4.218 14 C -0.073 4.073 15 C -0.214 4.214 16 C 0.106 3.894 17 O -0.075 6.075 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.493 5.493 22 Si 0.767 3.233 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.256 4.256 27 C -0.069 4.069 28 H 0.093 0.907 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.270 0.730 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.238 0.762 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.146 0.854 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.637 3.503 -3.585 24.162 hybrid contribution 0.702 0.186 0.988 1.227 sum -22.935 3.689 -2.596 23.374 Atomic orbital electron populations 1.21611 0.80947 1.02562 1.00914 1.45498 1.05927 1.07611 1.78036 1.17802 0.89613 0.87063 0.89193 1.20648 0.99871 0.91058 1.12252 1.21062 0.94260 0.97276 0.93698 1.20819 0.94266 0.97918 1.08342 1.21124 0.99454 0.91284 0.93372 1.19343 0.92240 0.93594 1.18335 1.18132 0.82053 0.88243 0.75715 1.90354 1.67577 1.32707 1.53725 1.46198 1.07489 1.10655 1.72084 1.20000 0.88011 0.84791 1.01492 1.19202 0.93858 1.14988 0.93734 1.20534 0.92292 0.96973 0.97477 1.20213 0.95704 1.10765 0.94755 1.19443 0.85440 0.91248 0.93281 1.83977 1.18676 1.75150 1.29727 1.21356 0.92877 1.52107 0.80604 0.88914 1.25325 0.94640 0.96354 1.00173 1.70038 1.02689 1.44580 1.32003 0.85689 0.78754 0.78683 0.80196 1.19786 1.20179 1.19132 1.21162 0.93589 1.11217 0.99645 1.20647 0.94748 0.96160 0.95347 0.90740 0.92932 0.92949 0.73046 0.85721 0.85908 0.85810 0.85637 0.76170 0.91478 0.91407 0.86942 0.86348 0.91866 0.85401 0.87396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.62 9.97 59.84 0.60 1.21 16 2 N -0.73 -8.11 5.74 -65.21 -0.37 -8.49 16 3 C 0.27 3.18 6.65 -83.61 -0.56 2.62 16 4 C -0.22 -2.04 9.30 -39.42 -0.37 -2.41 16 5 C -0.04 -0.37 10.03 -39.55 -0.40 -0.77 16 6 C -0.19 -1.76 10.02 -39.62 -0.40 -2.16 16 7 C -0.03 -0.34 9.52 -39.20 -0.37 -0.72 16 8 C -0.23 -2.78 5.89 -104.80 -0.62 -3.40 16 9 C 0.57 7.86 7.75 -12.52 -0.10 7.77 16 10 O -0.56 -8.88 13.64 5.28 0.07 -8.81 16 11 N -0.71 -9.20 5.50 -62.57 -0.34 -9.55 16 12 C 0.18 2.50 5.80 -5.20 -0.03 2.47 16 13 C -0.22 -3.44 5.25 -104.57 -0.55 -3.99 16 14 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16 15 C -0.20 -3.90 9.99 -39.40 -0.39 -4.29 16 16 C 0.16 3.70 6.65 -39.10 -0.26 3.44 16 17 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 18 C -0.39 -10.65 9.49 30.89 0.29 -10.36 16 19 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -24.57 13.67 55.48 0.76 -23.81 16 22 Si 0.94 19.98 29.55 -169.99 -5.02 14.95 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 C -0.24 -4.87 9.17 -39.39 -0.36 -5.23 16 27 C -0.05 -0.86 9.69 -39.60 -0.38 -1.25 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 30 H 0.05 0.33 7.73 -51.93 -0.40 -0.07 16 31 H 0.42 5.38 5.34 -40.94 -0.22 5.16 16 32 H 0.12 0.93 6.72 -52.49 -0.35 0.58 16 33 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 35 H 0.13 1.12 6.45 -52.49 -0.34 0.78 16 36 H 0.40 4.67 6.53 -40.82 -0.27 4.41 16 37 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 38 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 39 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.12 2.30 8.06 -52.49 -0.42 1.87 16 41 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.13 2.65 5.64 -52.49 -0.30 2.36 16 43 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 364.17 15.07 5.49 5.49 Total: -1.00 -31.08 364.17 -8.87 -39.95 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -5.08 Total: 12.40 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -4.37 Total: -17.37 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.04 Total: -41.85 kcal Atomic # 8 Polarization: -13.65 SS G_CDS: 0.07 Total: -13.57 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.08 -8.87 -39.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362214602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.351 kcal (2) G-P(sol) polarization free energy of solvation -31.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds