Wall clock time and date at job start Tue Mar 31 2020 14:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.38875 * 120.00149 * 2 1 4 4 C 1.38960 * 120.17333 * 354.50767 * 3 2 1 5 5 C 1.37946 * 120.06327 * 180.02562 * 4 3 2 6 6 C 1.38616 * 120.42735 * 359.97326 * 5 4 3 7 7 C 1.37749 * 120.34903 * 0.02562 * 6 5 4 8 8 C 1.39735 * 119.92598 * 359.97438 * 7 6 5 9 9 C 1.47438 * 120.20590 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99826 * 185.77927 * 9 8 7 11 11 N 1.34770 * 120.00388 * 5.77323 * 9 8 7 12 12 C 1.46495 * 120.00264 * 179.97438 * 11 9 8 13 13 C 1.50698 * 109.47116 * 180.02562 * 12 11 9 14 14 C 1.38302 * 119.93551 * 269.72920 * 13 12 11 15 15 C 1.38097 * 120.07028 * 179.72371 * 14 13 12 16 16 C 1.38879 * 119.93219 * 0.57438 * 15 14 13 17 17 O 1.35752 * 120.07300 * 179.68427 * 16 15 14 18 18 C 1.34827 * 117.00155 * 185.67117 * 17 16 15 19 19 H 1.08001 * 119.99880 * 354.92499 * 18 17 16 20 20 C 1.38652 * 120.00368 * 174.92817 * 18 17 16 21 21 N 1.31563 * 119.99658 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00262 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47124 * 90.00114 * 22 20 18 24 24 H 1.48501 * 109.46935 * 209.99680 * 22 20 18 25 25 H 1.48493 * 109.47338 * 330.00090 * 22 20 18 26 26 C 1.38886 * 119.86168 * 359.69731 * 16 15 14 27 27 C 1.38106 * 119.92938 * 0.02562 * 26 16 15 28 28 H 1.08997 * 109.47185 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47083 * 299.99915 * 1 2 3 30 30 H 1.08999 * 109.47071 * 60.00080 * 1 2 3 31 31 H 0.97003 * 120.00000 * 180.02562 * 2 1 3 32 32 H 1.08001 * 119.96392 * 359.97358 * 4 3 2 33 33 H 1.08002 * 119.78925 * 180.02562 * 5 4 3 34 34 H 1.07993 * 119.82577 * 180.02562 * 6 5 4 35 35 H 1.07999 * 120.03493 * 179.72702 * 7 6 5 36 36 H 0.97004 * 119.99915 * 0.02562 * 11 9 8 37 37 H 1.08993 * 109.47712 * 300.00379 * 12 11 9 38 38 H 1.09007 * 109.46792 * 60.00771 * 12 11 9 39 39 H 1.08001 * 119.96275 * 359.97438 * 14 13 12 40 40 H 1.08001 * 120.03610 * 180.27509 * 15 14 13 41 41 H 0.96996 * 119.99771 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.03791 * 179.97438 * 26 16 15 43 43 H 1.07990 * 119.96424 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1593 1.2027 0.0000 4 6 1.4730 2.4055 -0.1150 5 6 2.1651 3.5987 -0.1153 6 6 3.5465 3.6091 -0.0007 7 6 4.2442 2.4270 0.1142 8 6 3.5580 1.2098 0.1162 9 6 4.2987 -0.0592 0.2383 10 8 3.7110 -1.1186 0.1343 11 7 5.6271 -0.0450 0.4652 12 6 6.3629 -1.3058 0.5871 13 6 7.8202 -1.0148 0.8374 14 6 8.6908 -0.8833 -0.2291 15 6 10.0257 -0.6109 -0.0031 16 6 10.4959 -0.4809 1.2971 17 8 11.8088 -0.2195 1.5227 18 6 12.2217 -0.2221 2.8062 19 1 11.5041 -0.3446 3.6040 20 6 13.5675 -0.0675 3.1019 21 7 14.4416 0.0813 2.1300 22 14 14.1394 -0.0703 4.8802 23 1 14.4632 -1.4594 5.2938 24 1 15.3495 0.7803 5.0123 25 1 13.0603 0.4658 5.7481 26 6 9.6202 -0.6191 2.3662 27 6 8.2853 -0.8857 2.1335 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.9500 -0.8401 -0.0004 32 1 0.3967 2.4059 -0.2051 33 1 1.6271 4.5310 -0.2045 34 1 4.0784 4.5489 -0.0016 35 1 5.3208 2.4408 0.1988 36 1 6.0958 0.8002 0.5485 37 1 5.9599 -1.8828 1.4193 38 1 6.2594 -1.8775 -0.3353 39 1 8.3255 -0.9897 -1.2399 40 1 10.7042 -0.5040 -0.8366 41 1 15.3831 0.1891 2.3368 42 1 9.9829 -0.5189 3.3785 43 1 7.6040 -0.9937 2.9644 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362214602.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:11:22 Heat of formation + Delta-G solvation = -25.081265 kcal Electronic energy + Delta-G solvation = -25739.880333 eV Core-core repulsion = 21942.843914 eV Total energy + Delta-G solvation = -3797.036420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45605 -40.80022 -39.41242 -38.43335 -36.66162 -35.49150 -34.28430 -32.57593 -31.84141 -30.99737 -30.57475 -27.76178 -26.90515 -26.19916 -24.44782 -23.65801 -22.49086 -22.05085 -21.59849 -19.88755 -19.17205 -18.73493 -18.00843 -17.17435 -16.73099 -16.62626 -16.36092 -16.09024 -15.98609 -15.61289 -15.46205 -15.17778 -15.15194 -14.97110 -14.62253 -14.43933 -14.26666 -14.13647 -13.70151 -13.44680 -13.16657 -13.05553 -12.95259 -12.84184 -12.54164 -12.37364 -12.28241 -12.12132 -12.06397 -11.21376 -11.07704 -10.92005 -10.76037 -10.22274 -9.84848 -9.81162 -9.02405 -8.48640 -8.35987 -6.16822 0.02138 0.52802 0.56535 0.70174 1.35837 1.44125 1.52811 1.91063 2.16831 2.27918 2.66651 2.85357 3.02335 3.16072 3.48163 3.76708 3.88580 3.96231 4.01643 4.16228 4.22897 4.36501 4.43841 4.51710 4.54647 4.55878 4.65233 4.71232 4.77052 4.79572 4.88553 5.01860 5.03259 5.13642 5.19933 5.25252 5.41228 5.48478 5.51386 5.67153 5.68094 5.73650 5.92267 6.00958 6.14418 6.39363 6.55979 6.80749 6.96159 7.27300 7.75095 8.74080 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.021882 B = 0.002141 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.266597 B =13076.182858 C =13504.984428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.744 5.744 3 C 0.256 3.744 4 C -0.219 4.219 5 C -0.038 4.038 6 C -0.198 4.198 7 C -0.040 4.040 8 C -0.253 4.253 9 C 0.566 3.434 10 O -0.586 6.586 11 N -0.710 5.710 12 C 0.185 3.815 13 C -0.184 4.184 14 C -0.043 4.043 15 C -0.204 4.204 16 C 0.123 3.877 17 O -0.228 6.228 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.022 4.022 21 N -0.918 5.918 22 Si 1.018 2.982 23 H -0.264 1.264 24 H -0.272 1.272 25 H -0.252 1.252 26 C -0.243 4.243 27 C -0.046 4.046 28 H 0.085 0.915 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.411 0.589 32 H 0.144 0.856 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.409 0.591 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.273 0.727 42 H 0.121 0.879 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.901 5.029 -2.916 27.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.380 5.380 3 C 0.145 3.855 4 C -0.242 4.242 5 C -0.057 4.057 6 C -0.218 4.218 7 C -0.059 4.059 8 C -0.261 4.261 9 C 0.358 3.642 10 O -0.470 6.470 11 N -0.360 5.360 12 C 0.062 3.938 13 C -0.185 4.185 14 C -0.062 4.062 15 C -0.223 4.223 16 C 0.072 3.928 17 O -0.134 6.134 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.556 5.556 22 Si 0.837 3.163 23 H -0.189 1.189 24 H -0.196 1.196 25 H -0.176 1.176 26 C -0.262 4.262 27 C -0.064 4.064 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.257 0.743 32 H 0.162 0.838 33 H 0.171 0.829 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.246 0.754 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.165 0.835 40 H 0.134 0.866 41 H 0.082 0.918 42 H 0.139 0.861 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.078 4.270 -3.164 27.594 hybrid contribution 1.313 -0.068 0.675 1.478 sum -25.765 4.202 -2.489 26.223 Atomic orbital electron populations 1.21799 0.79053 1.03716 1.01812 1.45655 1.07301 1.07089 1.77971 1.18125 0.89759 0.87976 0.89655 1.20931 1.00924 0.90598 1.11751 1.21466 0.94240 0.98201 0.91825 1.21145 0.94844 0.98249 1.07547 1.21299 1.00062 0.91212 0.93354 1.19360 0.92758 0.93348 1.20660 1.18413 0.82015 0.88642 0.75132 1.90349 1.68052 1.33705 1.54855 1.46011 1.07393 1.10442 1.72202 1.19909 0.86243 0.85463 1.02143 1.19485 0.94961 1.11035 0.92997 1.20875 0.90738 0.95081 0.99490 1.20444 0.97239 1.10888 0.93710 1.19990 0.84741 0.92843 0.95207 1.83948 1.20995 1.78437 1.30022 1.21826 0.93649 1.52320 0.81140 0.87921 1.26585 0.94465 0.95820 1.05127 1.70180 1.03058 1.47700 1.34651 0.84593 0.78461 0.79021 0.74211 1.18941 1.19643 1.17564 1.21242 0.94757 1.11454 0.98759 1.20934 0.93629 0.94862 0.96991 0.89621 0.92099 0.91791 0.74265 0.83844 0.82888 0.83838 0.84758 0.75370 0.91017 0.90707 0.83545 0.86597 0.91794 0.86142 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 9.97 127.77 1.27 2.29 16 2 N -0.74 -15.53 5.74 -360.23 -2.07 -17.60 16 3 C 0.26 5.52 6.65 38.71 0.26 5.78 16 4 C -0.22 -3.57 9.30 22.37 0.21 -3.37 16 5 C -0.04 -0.53 10.03 22.29 0.22 -0.30 16 6 C -0.20 -3.04 10.02 22.24 0.22 -2.81 16 7 C -0.04 -0.75 9.52 22.52 0.21 -0.54 16 8 C -0.25 -5.82 5.89 -19.98 -0.12 -5.94 16 9 C 0.57 14.79 7.75 86.67 0.67 15.46 16 10 O -0.59 -17.87 13.64 -4.04 -0.06 -17.92 16 11 N -0.71 -16.59 5.50 -470.12 -2.58 -19.17 16 12 C 0.18 4.59 5.80 85.63 0.50 5.09 16 13 C -0.18 -5.34 5.25 -19.83 -0.10 -5.44 16 14 C -0.04 -1.35 9.69 22.25 0.22 -1.14 16 15 C -0.20 -8.17 9.99 22.39 0.22 -7.95 16 16 C 0.12 5.86 6.65 22.58 0.15 6.01 16 17 O -0.23 -13.32 9.76 -22.73 -0.22 -13.54 16 18 C -0.41 -23.44 9.49 67.92 0.64 -22.80 16 19 H 0.10 5.32 5.20 -2.91 -0.02 5.30 16 20 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 21 N -0.92 -55.39 13.67 21.61 0.30 -55.10 16 22 Si 1.02 41.97 29.55 68.60 2.03 44.00 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 26 C -0.24 -10.01 9.17 22.39 0.21 -9.80 16 27 C -0.05 -1.47 9.69 22.26 0.22 -1.26 16 28 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.66 8.12 -2.39 -0.02 0.64 16 30 H 0.06 0.65 7.73 -2.39 -0.02 0.63 16 31 H 0.41 10.22 5.34 -94.64 -0.51 9.72 16 32 H 0.14 1.70 6.72 -2.91 -0.02 1.68 16 33 H 0.15 1.13 8.06 -2.91 -0.02 1.11 16 34 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 35 H 0.13 2.12 6.45 -2.91 -0.02 2.10 16 36 H 0.41 8.48 6.53 -92.71 -0.61 7.87 16 37 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 38 H 0.07 1.83 8.08 -2.38 -0.02 1.81 16 39 H 0.15 3.63 8.06 -2.91 -0.02 3.60 16 40 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 41 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.12 5.08 5.64 -2.91 -0.02 5.06 16 43 H 0.14 3.67 8.06 -2.92 -0.02 3.64 16 Total: -1.00 -72.06 364.17 2.82 -69.24 By element: Atomic # 1 Polarization: 37.60 SS G_CDS: -0.04 Total: 37.55 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: 5.47 Total: -27.47 kcal Atomic # 7 Polarization: -87.51 SS G_CDS: -4.36 Total: -91.86 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.28 Total: -31.46 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -72.06 2.82 -69.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362214602.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.160 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds