Wall clock time and date at job start Tue Mar 31 2020 14:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35734 * 116.99876 * 2 1 4 4 C 1.39282 * 120.84758 * 359.97438 * 3 2 1 5 5 C 1.37956 * 119.09442 * 180.02562 * 4 3 2 6 6 N 1.31977 * 120.81799 * 359.97438 * 5 4 3 7 7 C 1.31941 * 121.86790 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.58985 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47254 * 275.00315 * 8 7 6 10 10 C 1.34781 * 119.99947 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99522 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00193 * 180.02562 * 10 9 8 13 13 H 1.08999 * 109.47121 * 59.99671 * 12 10 9 14 14 C 1.50703 * 109.46853 * 299.99923 * 12 10 9 15 15 H 1.07997 * 120.00225 * 333.07845 * 14 12 10 16 16 C 1.37882 * 119.99660 * 153.07817 * 14 12 10 17 17 N 1.31514 * 119.99887 * 6.40261 * 16 14 12 18 18 Si 1.86804 * 119.99692 * 186.40509 * 16 14 12 19 19 H 1.48504 * 109.46817 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.46966 * 299.99759 * 18 16 14 21 21 H 1.48495 * 109.47010 * 59.99865 * 18 16 14 22 22 C 1.50699 * 109.47054 * 180.02562 * 12 10 9 23 23 C 1.38227 * 120.00438 * 66.42374 * 22 12 10 24 24 C 1.38243 * 120.00156 * 179.78916 * 23 22 12 25 25 C 1.38236 * 119.99760 * 0.44252 * 24 23 22 26 26 C 1.38231 * 120.00026 * 359.80819 * 25 24 23 27 27 C 1.38241 * 120.00276 * 359.97438 * 26 25 24 28 28 C 1.37988 * 120.82226 * 0.27739 * 7 6 5 29 29 H 1.09007 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47169 * 299.99810 * 1 2 3 31 31 H 1.09001 * 109.47192 * 60.00304 * 1 2 3 32 32 H 1.07996 * 120.45568 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.58978 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46918 * 154.99835 * 8 7 6 35 35 H 1.09001 * 109.46860 * 35.00363 * 8 7 6 36 36 H 0.96994 * 120.00223 * 0.02562 * 9 8 7 37 37 H 0.96991 * 120.00213 * 355.60792 * 17 16 14 38 38 H 1.08005 * 120.00127 * 359.97438 * 23 22 12 39 39 H 1.07993 * 119.99833 * 180.27661 * 24 23 22 40 40 H 1.07997 * 119.99703 * 179.83587 * 25 24 23 41 41 H 1.07996 * 120.00220 * 180.02562 * 26 25 24 42 42 H 1.07990 * 120.00228 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.45508 * 179.70635 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3886 -0.0005 5 6 1.9675 3.5981 -0.0011 6 7 3.2864 3.6457 -0.0005 7 6 4.0230 2.5510 0.0000 8 6 5.5257 2.6651 0.0000 9 7 6.0035 2.8216 -1.3760 10 6 7.3232 2.9438 -1.6213 11 8 8.1150 2.9237 -0.7028 12 6 7.8148 3.1053 -3.0366 13 1 7.3817 4.0063 -3.4711 14 6 7.4025 1.9065 -3.8514 15 1 7.2472 0.9529 -3.3687 16 6 7.2236 2.0270 -5.2133 17 7 7.5331 3.1520 -5.8201 18 14 6.5414 0.5925 -6.1962 19 1 6.4466 0.9743 -7.6282 20 1 7.4443 -0.5780 -6.0553 21 1 5.1917 0.2407 -5.6867 22 6 9.3175 3.2193 -3.0365 23 6 10.0925 2.1402 -2.6552 24 6 11.4711 2.2435 -2.6593 25 6 12.0742 3.4289 -3.0360 26 6 11.2990 4.5097 -3.4124 27 6 9.9206 4.4050 -3.4126 28 6 3.4345 1.3029 -0.0057 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2245 2.3566 -0.0005 33 1 1.4007 4.5173 -0.0011 34 1 5.9585 1.7642 0.4347 35 1 5.8242 3.5323 0.5891 36 1 5.3702 2.8380 -2.1104 37 1 7.8269 3.9176 -5.3021 38 1 9.6212 1.2153 -2.3569 39 1 12.0767 1.3989 -2.3657 40 1 13.1511 3.5104 -3.0367 41 1 11.7702 5.4357 -3.7071 42 1 9.3150 5.2493 -3.7071 43 1 4.0432 0.4107 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362353180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:04 Heat of formation + Delta-G solvation = -19.789388 kcal Electronic energy + Delta-G solvation = -26626.418251 eV Core-core repulsion = 22829.611304 eV Total energy + Delta-G solvation = -3796.806947 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84552 -39.27645 -38.54871 -37.70874 -34.41536 -33.94057 -31.75571 -31.38681 -30.81128 -29.99190 -28.24200 -27.43597 -25.77088 -23.67666 -23.59246 -21.87229 -21.59727 -20.82785 -19.52818 -18.33215 -17.32129 -17.22131 -16.24168 -16.16236 -15.87241 -15.69188 -15.37567 -15.10469 -14.49033 -14.16936 -14.07478 -13.83385 -13.74767 -13.62805 -13.31360 -12.84738 -12.67642 -12.41722 -12.29585 -12.10965 -11.89355 -11.84791 -11.52776 -11.42441 -10.95417 -10.83188 -10.28411 -10.19286 -10.13064 -9.65272 -9.41135 -9.06928 -8.97563 -8.76810 -8.57815 -8.42910 -7.99204 -7.62437 -6.54754 -4.29971 0.85857 1.18563 2.31778 2.36595 2.81792 3.35442 3.36884 3.49991 3.55789 3.63359 4.07962 4.25735 4.40868 4.41309 4.65109 4.75096 4.77802 4.80415 4.99563 5.03600 5.11202 5.19465 5.42086 5.60899 5.68936 5.71569 5.75870 5.83236 5.86743 5.97744 6.11636 6.22773 6.33075 6.43238 6.49864 6.65290 6.90544 6.93328 7.00143 7.07730 7.32161 7.38534 7.61372 7.85548 7.90483 7.98156 8.21146 8.28050 8.63048 9.13120 9.42005 10.84219 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.003434 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.181732 B = 8151.783462 C = 9398.836188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.166 3.834 4 C -0.262 4.262 5 C 0.137 3.863 6 N -0.492 5.492 7 C 0.153 3.847 8 C 0.173 3.827 9 N -0.722 5.722 10 C 0.536 3.464 11 O -0.563 6.563 12 C 0.045 3.955 13 H 0.065 0.935 14 C -0.593 4.593 15 H 0.058 0.942 16 C 0.032 3.968 17 N -0.893 5.893 18 Si 1.067 2.933 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.018 4.018 23 C -0.078 4.078 24 C -0.133 4.133 25 C -0.146 4.146 26 C -0.129 4.129 27 C -0.127 4.127 28 C -0.184 4.184 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.138 0.862 33 H 0.159 0.841 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.406 0.594 37 H 0.273 0.727 38 H 0.112 0.888 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.158 -2.334 9.757 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.221 6.221 3 C 0.113 3.887 4 C -0.283 4.283 5 C -0.021 4.021 6 N -0.205 5.205 7 C 0.016 3.984 8 C 0.049 3.951 9 N -0.375 5.375 10 C 0.325 3.675 11 O -0.441 6.441 12 C 0.024 3.976 13 H 0.083 0.917 14 C -0.631 4.631 15 H 0.076 0.924 16 C -0.176 4.176 17 N -0.527 5.527 18 Si 0.895 3.105 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.019 4.019 23 C -0.096 4.096 24 C -0.151 4.151 25 C -0.164 4.164 26 C -0.147 4.147 27 C -0.145 4.145 28 C -0.205 4.205 29 H 0.121 0.879 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.241 0.759 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.470 -2.260 8.877 14.679 hybrid contribution -0.761 -0.265 1.128 1.386 sum -12.231 -2.524 10.005 16.002 Atomic orbital electron populations 1.23138 0.77816 1.04370 1.01624 1.86087 1.21858 1.26316 1.87819 1.19308 0.92356 0.84597 0.92467 1.22226 1.01469 0.93336 1.11271 1.22570 0.90007 0.97009 0.92484 1.67584 1.06900 1.31862 1.14142 1.21125 0.96427 0.87510 0.93324 1.19982 0.85676 1.03047 0.86418 1.45821 1.08496 1.76138 1.07046 1.21314 0.80794 0.73171 0.92203 1.90595 1.54914 1.51375 1.47227 1.18147 0.89354 1.00728 0.89420 0.91725 1.21538 1.52041 0.94877 0.94649 0.92375 1.25844 0.94159 1.02198 0.95353 1.70784 1.39712 1.03078 1.39100 0.83550 0.76317 0.74404 0.76238 1.20642 1.21228 1.21225 1.20090 0.96556 0.92016 0.93265 1.20789 0.92642 0.98443 0.97738 1.20981 0.95011 0.97292 1.01816 1.20816 0.98539 0.94064 1.03014 1.20878 0.93993 0.98130 1.01690 1.20969 0.94423 0.97390 1.01721 1.21384 0.92036 0.99973 1.07125 0.87862 0.92409 0.92249 0.84385 0.82350 0.90284 0.90057 0.75899 0.91475 0.86974 0.87424 0.87547 0.87421 0.87319 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.84 101.05 0.99 1.16 16 2 O -0.31 -3.37 10.51 -18.91 -0.20 -3.57 16 3 C 0.17 1.98 6.74 -38.82 -0.26 1.72 16 4 C -0.26 -2.64 9.11 -39.30 -0.36 -3.00 16 5 C 0.14 1.53 11.17 -17.59 -0.20 1.34 16 6 N -0.49 -7.05 10.27 -9.55 -0.10 -7.15 16 7 C 0.15 2.21 6.14 -82.64 -0.51 1.71 16 8 C 0.17 2.80 5.98 -5.19 -0.03 2.77 16 9 N -0.72 -13.76 5.45 -61.47 -0.33 -14.09 16 10 C 0.54 12.08 7.04 -10.98 -0.08 12.00 16 11 O -0.56 -13.76 15.43 5.56 0.09 -13.68 16 12 C 0.04 1.08 1.94 -94.08 -0.18 0.89 16 13 H 0.06 1.61 6.63 -51.93 -0.34 1.27 16 14 C -0.59 -15.12 7.45 -34.44 -0.26 -15.38 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.03 0.83 5.45 -17.82 -0.10 0.74 16 17 N -0.89 -24.96 13.63 55.43 0.76 -24.20 16 18 Si 1.07 23.67 29.91 -169.99 -5.08 18.59 16 19 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.29 -6.21 7.11 56.52 0.40 -5.80 16 21 H -0.29 -6.00 7.11 56.52 0.40 -5.60 16 22 C -0.02 -0.44 4.17 -104.62 -0.44 -0.87 16 23 C -0.08 -1.80 8.33 -39.58 -0.33 -2.13 16 24 C -0.13 -2.69 10.05 -39.58 -0.40 -3.09 16 25 C -0.15 -2.78 10.05 -39.58 -0.40 -3.18 16 26 C -0.13 -2.54 10.05 -39.58 -0.40 -2.94 16 27 C -0.13 -2.81 9.50 -39.58 -0.38 -3.19 16 28 C -0.18 -2.45 9.68 -39.30 -0.38 -2.83 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.29 7.71 -51.93 -0.40 -0.11 16 31 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 32 H 0.14 0.96 6.47 -52.49 -0.34 0.62 16 33 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.41 7.67 8.35 -40.82 -0.34 7.33 16 37 H 0.27 7.58 6.49 -40.82 -0.26 7.32 16 38 H 0.11 2.63 7.88 -52.48 -0.41 2.22 16 39 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.11 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.11 2.28 7.96 -52.49 -0.42 1.86 16 43 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 370.83 15.07 5.59 5.59 Total: -1.00 -32.03 370.83 -8.48 -40.52 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -5.50 Total: 12.29 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -3.69 Total: -14.29 kcal Atomic # 7 Polarization: -45.76 SS G_CDS: 0.32 Total: -45.44 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.11 Total: -17.25 kcal Atomic # 14 Polarization: 23.67 SS G_CDS: -5.08 Total: 18.59 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.03 -8.48 -40.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362353180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.727 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds