Wall clock time and date at job start Tue Mar 31 2020 14:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35734 * 116.99876 * 2 1 4 4 C 1.39282 * 120.84758 * 359.97438 * 3 2 1 5 5 C 1.37956 * 119.09442 * 180.02562 * 4 3 2 6 6 N 1.31977 * 120.81799 * 359.97438 * 5 4 3 7 7 C 1.31941 * 121.86790 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.58985 * 179.97438 * 7 6 5 9 9 N 1.46495 * 109.47254 * 275.00315 * 8 7 6 10 10 C 1.34781 * 119.99947 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99522 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00193 * 180.02562 * 10 9 8 13 13 H 1.08999 * 109.47121 * 59.99671 * 12 10 9 14 14 C 1.50703 * 109.46853 * 299.99923 * 12 10 9 15 15 H 1.07997 * 120.00225 * 333.07845 * 14 12 10 16 16 C 1.37882 * 119.99660 * 153.07817 * 14 12 10 17 17 N 1.31514 * 119.99887 * 6.40261 * 16 14 12 18 18 Si 1.86804 * 119.99692 * 186.40509 * 16 14 12 19 19 H 1.48504 * 109.46817 * 180.02562 * 18 16 14 20 20 H 1.48499 * 109.46966 * 299.99759 * 18 16 14 21 21 H 1.48495 * 109.47010 * 59.99865 * 18 16 14 22 22 C 1.50699 * 109.47054 * 180.02562 * 12 10 9 23 23 C 1.38227 * 120.00438 * 66.42374 * 22 12 10 24 24 C 1.38243 * 120.00156 * 179.78916 * 23 22 12 25 25 C 1.38236 * 119.99760 * 0.44252 * 24 23 22 26 26 C 1.38231 * 120.00026 * 359.80819 * 25 24 23 27 27 C 1.38241 * 120.00276 * 359.97438 * 26 25 24 28 28 C 1.37988 * 120.82226 * 0.27739 * 7 6 5 29 29 H 1.09007 * 109.47485 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47169 * 299.99810 * 1 2 3 31 31 H 1.09001 * 109.47192 * 60.00304 * 1 2 3 32 32 H 1.07996 * 120.45568 * 0.02562 * 4 3 2 33 33 H 1.07994 * 119.58978 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46918 * 154.99835 * 8 7 6 35 35 H 1.09001 * 109.46860 * 35.00363 * 8 7 6 36 36 H 0.96994 * 120.00223 * 0.02562 * 9 8 7 37 37 H 0.96991 * 120.00213 * 355.60792 * 17 16 14 38 38 H 1.08005 * 120.00127 * 359.97438 * 23 22 12 39 39 H 1.07993 * 119.99833 * 180.27661 * 24 23 22 40 40 H 1.07997 * 119.99703 * 179.83587 * 25 24 23 41 41 H 1.07996 * 120.00220 * 180.02562 * 26 25 24 42 42 H 1.07990 * 120.00228 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.45508 * 179.70635 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3886 -0.0005 5 6 1.9675 3.5981 -0.0011 6 7 3.2864 3.6457 -0.0005 7 6 4.0230 2.5510 0.0000 8 6 5.5257 2.6651 0.0000 9 7 6.0035 2.8216 -1.3760 10 6 7.3232 2.9438 -1.6213 11 8 8.1150 2.9237 -0.7028 12 6 7.8148 3.1053 -3.0366 13 1 7.3817 4.0063 -3.4711 14 6 7.4025 1.9065 -3.8514 15 1 7.2472 0.9529 -3.3687 16 6 7.2236 2.0270 -5.2133 17 7 7.5331 3.1520 -5.8201 18 14 6.5414 0.5925 -6.1962 19 1 6.4466 0.9743 -7.6282 20 1 7.4443 -0.5780 -6.0553 21 1 5.1917 0.2407 -5.6867 22 6 9.3175 3.2193 -3.0365 23 6 10.0925 2.1402 -2.6552 24 6 11.4711 2.2435 -2.6593 25 6 12.0742 3.4289 -3.0360 26 6 11.2990 4.5097 -3.4124 27 6 9.9206 4.4050 -3.4126 28 6 3.4345 1.3029 -0.0057 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2245 2.3566 -0.0005 33 1 1.4007 4.5173 -0.0011 34 1 5.9585 1.7642 0.4347 35 1 5.8242 3.5323 0.5891 36 1 5.3702 2.8380 -2.1104 37 1 7.8269 3.9176 -5.3021 38 1 9.6212 1.2153 -2.3569 39 1 12.0767 1.3989 -2.3657 40 1 13.1511 3.5104 -3.0367 41 1 11.7702 5.4357 -3.7071 42 1 9.3150 5.2493 -3.7071 43 1 4.0432 0.4107 -0.0100 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362353180.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:03 Heat of formation + Delta-G solvation = -39.922853 kcal Electronic energy + Delta-G solvation = -26627.291303 eV Core-core repulsion = 22829.611304 eV Total energy + Delta-G solvation = -3797.679999 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.78141 -40.95425 -39.60943 -39.19330 -35.88552 -35.86560 -32.84298 -32.63436 -32.37855 -31.63026 -29.46271 -28.54168 -27.10217 -25.52907 -24.55878 -23.28087 -22.96277 -22.36325 -21.27096 -19.45700 -18.97509 -18.19459 -17.72381 -17.53054 -17.00236 -16.76935 -16.72212 -16.41146 -15.88193 -15.66748 -15.59276 -15.37669 -14.95204 -14.74692 -14.58154 -14.43011 -14.07569 -14.06300 -13.81805 -13.56029 -13.21461 -13.05518 -12.84441 -12.59090 -12.52775 -12.21353 -11.97621 -11.91359 -11.78989 -10.94391 -10.76904 -10.61767 -10.56520 -10.18201 -10.06167 -9.94021 -9.64534 -9.33849 -8.62997 -6.38102 -0.10490 0.26094 0.66256 0.72121 1.54767 1.60864 1.80240 1.81633 2.07705 2.31786 2.56856 2.85937 3.09882 3.12549 3.22657 3.60645 3.79487 4.03962 4.05769 4.11415 4.22158 4.26061 4.31538 4.35069 4.36256 4.39425 4.40767 4.61255 4.66002 4.69485 4.72795 4.82051 4.84434 4.91030 4.98883 5.26072 5.32912 5.42454 5.47023 5.69533 5.73281 5.74210 6.05326 6.15178 6.17091 6.31659 6.51514 6.60930 6.94805 7.35868 7.40585 8.76018 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012822 B = 0.003434 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.181732 B = 8151.783462 C = 9398.836188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.327 6.327 3 C 0.161 3.839 4 C -0.246 4.246 5 C 0.131 3.869 6 N -0.521 5.521 7 C 0.139 3.861 8 C 0.177 3.823 9 N -0.711 5.711 10 C 0.534 3.466 11 O -0.586 6.586 12 C 0.045 3.955 13 H 0.047 0.953 14 C -0.589 4.589 15 H 0.049 0.951 16 C -0.010 4.010 17 N -0.920 5.920 18 Si 1.108 2.892 19 H -0.285 1.285 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.046 4.046 23 C -0.107 4.107 24 C -0.134 4.134 25 C -0.140 4.140 26 C -0.127 4.127 27 C -0.150 4.150 28 C -0.197 4.197 29 H 0.121 0.879 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.176 0.824 33 H 0.191 0.809 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.406 0.594 37 H 0.264 0.736 38 H 0.095 0.905 39 H 0.138 0.862 40 H 0.150 0.850 41 H 0.143 0.857 42 H 0.107 0.893 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.136 -2.826 9.994 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.108 3.892 4 C -0.266 4.266 5 C -0.026 4.026 6 N -0.235 5.235 7 C 0.002 3.998 8 C 0.053 3.947 9 N -0.362 5.362 10 C 0.323 3.677 11 O -0.467 6.467 12 C 0.023 3.977 13 H 0.064 0.936 14 C -0.626 4.626 15 H 0.067 0.933 16 C -0.211 4.211 17 N -0.555 5.555 18 Si 0.930 3.070 19 H -0.210 1.210 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.047 4.047 23 C -0.125 4.125 24 C -0.151 4.151 25 C -0.158 4.158 26 C -0.145 4.145 27 C -0.169 4.169 28 C -0.219 4.219 29 H 0.139 0.861 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.194 0.806 33 H 0.208 0.792 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.241 0.759 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.156 0.844 40 H 0.168 0.832 41 H 0.160 0.840 42 H 0.125 0.875 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -12.486 -2.759 9.142 15.719 hybrid contribution -0.531 -0.106 1.139 1.261 sum -13.017 -2.865 10.282 16.833 Atomic orbital electron populations 1.23502 0.75362 1.06179 1.02969 1.86075 1.24397 1.25866 1.87531 1.19401 0.91995 0.85779 0.92071 1.22584 1.03228 0.92009 1.08791 1.23152 0.89053 0.98897 0.91488 1.67521 1.08670 1.32015 1.15272 1.20723 0.95183 0.88315 0.95535 1.20005 0.87644 1.02727 0.84326 1.45739 1.07327 1.74567 1.08546 1.21094 0.81766 0.73378 0.91454 1.90560 1.55768 1.52814 1.47543 1.18078 0.90265 0.99333 0.90006 0.93560 1.21622 1.51277 0.94883 0.94850 0.93251 1.27029 0.93955 1.03511 0.96626 1.70873 1.41844 1.03624 1.39161 0.83033 0.76914 0.72172 0.74842 1.21044 1.20385 1.19079 1.20146 0.96260 0.93303 0.95010 1.20830 0.94314 0.97758 0.99600 1.21364 0.93965 0.99055 1.00759 1.21315 1.00715 0.92870 1.00897 1.21315 0.92931 0.99925 1.00298 1.21162 0.96075 0.96992 1.02629 1.21389 0.93331 0.99359 1.07796 0.86062 0.90659 0.91158 0.80631 0.79187 0.90019 0.90843 0.75867 0.92527 0.88700 0.84397 0.83203 0.83965 0.87451 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.84 113.37 1.12 1.25 16 2 O -0.33 -6.55 10.51 -90.58 -0.95 -7.50 16 3 C 0.16 3.62 6.74 22.76 0.15 3.77 16 4 C -0.25 -4.29 9.11 22.45 0.20 -4.09 16 5 C 0.13 2.68 11.17 84.60 0.95 3.62 16 6 N -0.52 -14.82 10.27 -184.13 -1.89 -16.71 16 7 C 0.14 4.10 6.14 42.48 0.26 4.36 16 8 C 0.18 6.00 5.98 85.64 0.51 6.51 16 9 N -0.71 -28.45 5.45 -466.79 -2.54 -31.00 16 10 C 0.53 25.33 7.04 87.66 0.62 25.95 16 11 O -0.59 -29.98 15.43 -3.04 -0.05 -30.03 16 12 C 0.04 2.25 1.94 -13.03 -0.03 2.23 16 13 H 0.05 2.47 6.63 -2.39 -0.02 2.45 16 14 C -0.59 -31.09 7.45 25.60 0.19 -30.90 16 15 H 0.05 2.64 7.82 -2.91 -0.02 2.61 16 16 C -0.01 -0.52 5.45 84.66 0.46 -0.06 16 17 N -0.92 -52.85 13.63 21.45 0.29 -52.56 16 18 Si 1.11 47.99 29.91 68.60 2.05 50.04 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.27 -10.55 7.11 99.48 0.71 -9.84 16 22 C -0.05 -2.29 4.17 -19.87 -0.08 -2.37 16 23 C -0.11 -5.05 8.33 22.27 0.19 -4.87 16 24 C -0.13 -5.24 10.05 22.27 0.22 -5.01 16 25 C -0.14 -4.95 10.05 22.27 0.22 -4.73 16 26 C -0.13 -4.80 10.05 22.27 0.22 -4.57 16 27 C -0.15 -6.79 9.50 22.27 0.21 -6.58 16 28 C -0.20 -5.29 9.68 22.45 0.22 -5.07 16 29 H 0.12 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.07 0.48 7.71 -2.39 -0.02 0.46 16 31 H 0.07 0.54 7.71 -2.39 -0.02 0.53 16 32 H 0.18 1.66 6.47 -2.91 -0.02 1.64 16 33 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.08 2.69 8.04 -2.39 -0.02 2.67 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.41 16.12 8.35 -92.71 -0.77 15.35 16 37 H 0.26 15.28 6.49 -92.71 -0.60 14.68 16 38 H 0.09 4.67 7.88 -2.91 -0.02 4.65 16 39 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 40 H 0.15 3.99 8.06 -2.91 -0.02 3.97 16 41 H 0.14 4.31 8.06 -2.91 -0.02 4.28 16 42 H 0.11 4.70 7.96 -2.92 -0.02 4.68 16 43 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -71.94 370.83 2.98 -68.96 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: 0.43 Total: 39.35 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 5.64 Total: -20.56 kcal Atomic # 7 Polarization: -96.12 SS G_CDS: -4.14 Total: -100.27 kcal Atomic # 8 Polarization: -36.53 SS G_CDS: -1.00 Total: -37.53 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.05 Total: 50.04 kcal Total: -71.94 2.98 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362353180.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.038 kcal (2) G-P(sol) polarization free energy of solvation -71.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds