Wall clock time and date at job start Tue Mar 31 2020 14:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99719 * 2 1 4 4 C 1.52996 * 109.46924 * 269.99449 * 3 2 1 5 5 H 1.09005 * 109.46877 * 60.00505 * 4 3 2 6 6 O 1.42898 * 109.47209 * 300.00331 * 4 3 2 7 7 C 1.50707 * 109.47183 * 180.02562 * 4 3 2 8 8 C 1.38668 * 120.41816 * 265.00390 * 7 4 3 9 9 C 1.38624 * 118.42183 * 179.97438 * 8 7 4 10 10 C 1.38227 * 119.15768 * 359.97438 * 9 8 7 11 11 N 1.31858 * 120.76805 * 0.02562 * 10 9 8 12 12 C 1.31881 * 121.71942 * 359.69832 * 11 10 9 13 13 C 1.34774 * 119.99931 * 179.97438 * 2 1 3 14 14 O 1.21587 * 119.99829 * 185.03928 * 13 2 1 15 15 C 1.47641 * 120.00005 * 4.76438 * 13 2 1 16 16 C 1.40007 * 119.89676 * 320.84133 * 15 13 2 17 17 C 1.36320 * 120.10909 * 179.71939 * 16 15 13 18 18 C 1.40887 * 119.88522 * 0.55734 * 17 16 15 19 19 C 1.41110 * 120.09783 * 179.69591 * 18 17 16 20 20 H 1.07998 * 119.99741 * 206.90681 * 19 18 17 21 21 C 1.40228 * 120.00280 * 26.90992 * 19 18 17 22 22 N 1.30645 * 119.99755 * 11.43371 * 21 19 18 23 23 Si 1.86790 * 120.00198 * 191.43301 * 21 19 18 24 24 H 1.48501 * 109.46991 * 90.00013 * 23 21 19 25 25 H 1.48505 * 109.47472 * 209.99991 * 23 21 19 26 26 H 1.48497 * 109.47484 * 330.00189 * 23 21 19 27 27 C 1.40885 * 119.79713 * 359.71911 * 18 17 16 28 28 C 1.36318 * 119.89172 * 359.97438 * 27 18 17 29 29 H 1.08995 * 109.47514 * 264.37610 * 1 2 3 30 30 H 1.08994 * 109.46877 * 24.37944 * 1 2 3 31 31 H 1.09004 * 109.46671 * 144.37579 * 1 2 3 32 32 H 1.09000 * 109.47345 * 29.99638 * 3 2 1 33 33 H 1.08997 * 109.46695 * 149.99745 * 3 2 1 34 34 H 0.96704 * 113.99651 * 299.99512 * 6 4 3 35 35 H 1.07998 * 120.79083 * 359.97438 * 8 7 4 36 36 H 1.08000 * 120.42419 * 180.02562 * 9 8 7 37 37 H 1.08004 * 119.61865 * 179.97438 * 10 9 8 38 38 H 1.08005 * 119.61921 * 180.31437 * 12 11 10 39 39 H 1.08005 * 119.94816 * 359.97438 * 16 15 13 40 40 H 1.07999 * 120.05345 * 180.27846 * 17 16 15 41 41 H 0.97001 * 120.00267 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.05461 * 179.97438 * 27 18 17 43 43 H 1.07994 * 119.94644 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5001 1.8407 -1.9563 6 8 3.2249 0.7144 -2.1160 7 6 3.2066 3.0152 -1.4425 8 6 2.5264 4.2191 -1.5467 9 6 3.2612 5.3946 -1.5420 10 6 4.6376 5.3280 -1.4339 11 7 5.2511 4.1649 -1.3366 12 6 4.5839 3.0273 -1.3324 13 6 2.1389 -1.1672 0.0005 14 8 3.3512 -1.1692 0.0930 15 6 1.4045 -2.4436 -0.1051 16 6 0.1886 -2.6071 0.5695 17 6 -0.4959 -3.7818 0.4704 18 6 0.0280 -4.8364 -0.3030 19 6 -0.6737 -6.0566 -0.4035 20 1 -0.1372 -6.9736 -0.5974 21 6 -2.0676 -6.0784 -0.2518 22 7 -2.7411 -4.9590 -0.2412 23 14 -2.9613 -7.7079 -0.0648 24 1 -3.0481 -8.0626 1.3746 25 1 -4.3300 -7.5895 -0.6288 26 1 -2.2165 -8.7673 -0.7916 27 6 1.2547 -4.6693 -0.9753 28 6 1.9289 -3.4887 -0.8753 29 1 -0.3634 -0.1007 1.0226 30 1 -0.3633 0.9360 -0.4242 31 1 -0.3633 -0.8354 -0.5986 32 1 1.6084 2.0285 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0874 0.5461 -1.7124 35 1 1.4498 4.2405 -1.6294 36 1 2.7645 6.3504 -1.6209 37 1 5.2174 6.2392 -1.4299 38 1 5.1207 2.0941 -1.2460 39 1 -0.2098 -1.7997 1.1661 40 1 -1.4360 -3.9053 0.9875 41 1 -3.7053 -4.9741 -0.1367 42 1 1.6604 -5.4751 -1.5690 43 1 2.8695 -3.3598 -1.3899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363054551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:03 Heat of formation + Delta-G solvation = -22.214317 kcal Electronic energy + Delta-G solvation = -26665.938670 eV Core-core repulsion = 22869.026571 eV Total energy + Delta-G solvation = -3796.912100 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65393 -39.47526 -37.55326 -36.74307 -34.86677 -33.81418 -33.01056 -31.72519 -30.49157 -29.48269 -28.63207 -26.45428 -25.85655 -24.11656 -23.82664 -21.95343 -21.18203 -20.96171 -19.00572 -17.81192 -17.49159 -16.86773 -16.69712 -16.30849 -15.82752 -15.66817 -15.23122 -14.60235 -14.41164 -14.21891 -14.14435 -13.69044 -13.53819 -13.35236 -13.10247 -12.81172 -12.56781 -12.42533 -12.17310 -11.84986 -11.80469 -11.69123 -11.52416 -11.26714 -11.23903 -10.93808 -10.61170 -10.46555 -10.09002 -10.01462 -9.68439 -9.49741 -9.35427 -9.31648 -8.97054 -8.21326 -7.65719 -7.47346 -6.93299 -4.57494 0.79703 0.98728 2.33128 2.95170 2.97779 3.00633 3.03850 3.33098 3.55332 3.74690 3.79837 4.14524 4.34678 4.53472 4.53739 4.55855 4.67032 4.77621 4.93496 5.04808 5.21427 5.35964 5.42329 5.49424 5.55086 5.63732 5.75327 5.79640 5.89375 6.08653 6.15081 6.19937 6.30016 6.38793 6.79559 6.85885 6.88079 7.07849 7.17091 7.47846 7.60654 7.63805 7.70331 7.83950 7.89618 8.02219 8.11702 8.45245 8.68865 8.78863 8.94558 9.97216 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.033524 B = 0.002383 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.013005 B =11745.637984 C =12188.277560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.618 5.618 3 C 0.092 3.908 4 C 0.137 3.863 5 H 0.107 0.893 6 O -0.540 6.540 7 C -0.162 4.162 8 C -0.067 4.067 9 C -0.172 4.172 10 C 0.093 3.907 11 N -0.481 5.481 12 C 0.110 3.890 13 C 0.586 3.414 14 O -0.567 6.567 15 C -0.273 4.273 16 C -0.076 4.076 17 C -0.173 4.173 18 C 0.125 3.875 19 C -0.446 4.446 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.784 5.784 23 Si 0.915 3.085 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.234 4.234 28 C -0.029 4.029 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.378 0.622 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.099 0.901 40 H 0.125 0.875 41 H 0.284 0.716 42 H 0.097 0.903 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 16.542 -0.461 16.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.351 5.351 3 C -0.033 4.033 4 C 0.075 3.925 5 H 0.125 0.875 6 O -0.346 6.346 7 C -0.165 4.165 8 C -0.093 4.093 9 C -0.192 4.192 10 C -0.064 4.064 11 N -0.190 5.190 12 C -0.047 4.047 13 C 0.381 3.619 14 O -0.447 6.447 15 C -0.277 4.277 16 C -0.094 4.094 17 C -0.193 4.193 18 C 0.122 3.878 19 C -0.475 4.475 20 H 0.100 0.900 21 C -0.147 4.147 22 N -0.408 5.408 23 Si 0.739 3.261 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.254 4.254 28 C -0.048 4.048 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.108 0.892 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.227 0.773 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.117 0.883 40 H 0.143 0.857 41 H 0.095 0.905 42 H 0.115 0.885 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.423 16.583 -0.714 16.948 hybrid contribution -1.172 -0.391 0.315 1.275 sum 2.251 16.192 -0.399 16.353 Atomic orbital electron populations 1.22069 0.79595 1.02902 1.01621 1.47614 1.06723 1.05013 1.75738 1.21988 0.99063 0.86574 0.95644 1.21198 0.94060 0.83095 0.94134 0.87479 1.86648 1.33716 1.58424 1.55858 1.21652 0.96213 0.97037 1.01618 1.21459 1.00664 0.91639 0.95539 1.22141 0.95694 0.99252 1.02075 1.22816 0.92284 0.96060 0.95234 1.67722 1.40924 0.98489 1.11822 1.22563 0.90953 0.96664 0.94487 1.18665 0.86574 0.83467 0.73199 1.90590 1.14712 1.87680 1.51740 1.18841 1.00095 0.94382 1.14375 1.20814 0.93133 0.97488 0.98010 1.21094 1.01570 0.93850 1.02763 1.17795 0.90332 0.92816 0.86876 1.19802 0.91616 0.95061 1.40987 0.89987 1.26047 0.98235 0.98386 0.92049 1.69706 1.09303 1.28194 1.33591 0.86185 0.78566 0.81664 0.79657 1.19099 1.20091 1.18416 1.20725 1.00072 0.97454 1.07098 1.20242 0.96666 0.92302 0.95578 0.92821 0.92486 0.89236 0.90289 0.89565 0.77278 0.84623 0.84661 0.82771 0.82796 0.88324 0.85741 0.90499 0.88466 0.88647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.14 8.87 59.85 0.53 1.67 16 2 N -0.62 -9.93 2.83 -182.77 -0.52 -10.45 16 3 C 0.09 1.17 5.13 -4.04 -0.02 1.15 16 4 C 0.14 1.64 3.50 -27.88 -0.10 1.55 16 5 H 0.11 1.24 8.06 -51.93 -0.42 0.82 16 6 O -0.54 -8.09 12.06 -37.01 -0.45 -8.53 16 7 C -0.16 -1.72 5.02 -104.48 -0.52 -2.24 16 8 C -0.07 -0.58 9.84 -39.28 -0.39 -0.97 16 9 C -0.17 -1.34 10.11 -39.44 -0.40 -1.74 16 10 C 0.09 0.85 11.18 -17.54 -0.20 0.65 16 11 N -0.48 -5.65 10.36 -13.25 -0.14 -5.78 16 12 C 0.11 1.26 10.49 -17.55 -0.18 1.07 16 13 C 0.59 11.95 6.77 -12.42 -0.08 11.87 16 14 O -0.57 -12.52 15.60 3.51 0.05 -12.47 16 15 C -0.27 -6.10 5.26 -104.73 -0.55 -6.65 16 16 C -0.08 -1.65 7.51 -39.61 -0.30 -1.95 16 17 C -0.17 -4.21 8.62 -39.27 -0.34 -4.55 16 18 C 0.12 3.17 5.57 -106.80 -0.60 2.58 16 19 C -0.45 -11.14 9.06 -37.75 -0.34 -11.49 16 20 H 0.08 1.97 7.88 -52.49 -0.41 1.56 16 21 C 0.07 1.69 5.25 -17.31 -0.09 1.60 16 22 N -0.78 -18.66 10.73 55.56 0.60 -18.06 16 23 Si 0.92 17.48 29.58 -169.99 -5.03 12.45 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 25 H -0.28 -5.15 7.11 56.52 0.40 -4.75 16 26 H -0.26 -4.96 7.11 56.52 0.40 -4.55 16 27 C -0.23 -5.65 9.73 -39.27 -0.38 -6.03 16 28 C -0.03 -0.67 9.56 -39.61 -0.38 -1.05 16 29 H 0.05 0.71 6.78 -51.93 -0.35 0.35 16 30 H 0.06 0.61 8.03 -51.93 -0.42 0.20 16 31 H 0.09 1.49 5.91 -51.93 -0.31 1.18 16 32 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.09 1.21 7.36 -51.93 -0.38 0.83 16 34 H 0.38 5.16 6.99 45.56 0.32 5.47 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 36 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 37 H 0.16 0.97 8.06 -52.48 -0.42 0.54 16 38 H 0.15 1.63 6.64 -52.48 -0.35 1.28 16 39 H 0.10 1.88 5.23 -52.48 -0.27 1.60 16 40 H 0.12 3.08 6.08 -52.49 -0.32 2.76 16 41 H 0.28 6.10 8.29 -40.82 -0.34 5.76 16 42 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 43 H 0.10 2.13 8.04 -52.49 -0.42 1.71 16 LS Contribution 359.56 15.07 5.42 5.42 Total: -1.00 -29.99 359.56 -8.98 -38.97 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -4.58 Total: 12.97 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -4.34 Total: -14.52 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.06 Total: -34.29 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.39 Total: -21.00 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.99 -8.98 -38.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363054551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.755 kcal (2) G-P(sol) polarization free energy of solvation -29.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds