Wall clock time and date at job start Tue Mar 31 2020 14:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46504 * 119.99719 * 2 1 4 4 C 1.52996 * 109.46924 * 269.99449 * 3 2 1 5 5 H 1.09005 * 109.46877 * 60.00505 * 4 3 2 6 6 O 1.42898 * 109.47209 * 300.00331 * 4 3 2 7 7 C 1.50707 * 109.47183 * 180.02562 * 4 3 2 8 8 C 1.38668 * 120.41816 * 265.00390 * 7 4 3 9 9 C 1.38624 * 118.42183 * 179.97438 * 8 7 4 10 10 C 1.38227 * 119.15768 * 359.97438 * 9 8 7 11 11 N 1.31858 * 120.76805 * 0.02562 * 10 9 8 12 12 C 1.31881 * 121.71942 * 359.69832 * 11 10 9 13 13 C 1.34774 * 119.99931 * 179.97438 * 2 1 3 14 14 O 1.21587 * 119.99829 * 185.03928 * 13 2 1 15 15 C 1.47641 * 120.00005 * 4.76438 * 13 2 1 16 16 C 1.40007 * 119.89676 * 320.84133 * 15 13 2 17 17 C 1.36320 * 120.10909 * 179.71939 * 16 15 13 18 18 C 1.40887 * 119.88522 * 0.55734 * 17 16 15 19 19 C 1.41110 * 120.09783 * 179.69591 * 18 17 16 20 20 H 1.07998 * 119.99741 * 206.90681 * 19 18 17 21 21 C 1.40228 * 120.00280 * 26.90992 * 19 18 17 22 22 N 1.30645 * 119.99755 * 11.43371 * 21 19 18 23 23 Si 1.86790 * 120.00198 * 191.43301 * 21 19 18 24 24 H 1.48501 * 109.46991 * 90.00013 * 23 21 19 25 25 H 1.48505 * 109.47472 * 209.99991 * 23 21 19 26 26 H 1.48497 * 109.47484 * 330.00189 * 23 21 19 27 27 C 1.40885 * 119.79713 * 359.71911 * 18 17 16 28 28 C 1.36318 * 119.89172 * 359.97438 * 27 18 17 29 29 H 1.08995 * 109.47514 * 264.37610 * 1 2 3 30 30 H 1.08994 * 109.46877 * 24.37944 * 1 2 3 31 31 H 1.09004 * 109.46671 * 144.37579 * 1 2 3 32 32 H 1.09000 * 109.47345 * 29.99638 * 3 2 1 33 33 H 1.08997 * 109.46695 * 149.99745 * 3 2 1 34 34 H 0.96704 * 113.99651 * 299.99512 * 6 4 3 35 35 H 1.07998 * 120.79083 * 359.97438 * 8 7 4 36 36 H 1.08000 * 120.42419 * 180.02562 * 9 8 7 37 37 H 1.08004 * 119.61865 * 179.97438 * 10 9 8 38 38 H 1.08005 * 119.61921 * 180.31437 * 12 11 10 39 39 H 1.08005 * 119.94816 * 359.97438 * 16 15 13 40 40 H 1.07999 * 120.05345 * 180.27846 * 17 16 15 41 41 H 0.97001 * 120.00267 * 179.97438 * 22 21 19 42 42 H 1.07999 * 120.05461 * 179.97438 * 27 18 17 43 43 H 1.07994 * 119.94644 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4526 1.7104 -1.4425 5 1 1.5001 1.8407 -1.9563 6 8 3.2249 0.7144 -2.1160 7 6 3.2066 3.0152 -1.4425 8 6 2.5264 4.2191 -1.5467 9 6 3.2612 5.3946 -1.5420 10 6 4.6376 5.3280 -1.4339 11 7 5.2511 4.1649 -1.3366 12 6 4.5839 3.0273 -1.3324 13 6 2.1389 -1.1672 0.0005 14 8 3.3512 -1.1692 0.0930 15 6 1.4045 -2.4436 -0.1051 16 6 0.1886 -2.6071 0.5695 17 6 -0.4959 -3.7818 0.4704 18 6 0.0280 -4.8364 -0.3030 19 6 -0.6737 -6.0566 -0.4035 20 1 -0.1372 -6.9736 -0.5974 21 6 -2.0676 -6.0784 -0.2518 22 7 -2.7411 -4.9590 -0.2412 23 14 -2.9613 -7.7079 -0.0648 24 1 -3.0481 -8.0626 1.3746 25 1 -4.3300 -7.5895 -0.6288 26 1 -2.2165 -8.7673 -0.7916 27 6 1.2547 -4.6693 -0.9753 28 6 1.9289 -3.4887 -0.8753 29 1 -0.3634 -0.1007 1.0226 30 1 -0.3633 0.9360 -0.4242 31 1 -0.3633 -0.8354 -0.5986 32 1 1.6084 2.0285 0.5138 33 1 3.1499 1.1384 0.5139 34 1 4.0874 0.5461 -1.7124 35 1 1.4498 4.2405 -1.6294 36 1 2.7645 6.3504 -1.6209 37 1 5.2174 6.2392 -1.4299 38 1 5.1207 2.0941 -1.2460 39 1 -0.2098 -1.7997 1.1661 40 1 -1.4360 -3.9053 0.9875 41 1 -3.7053 -4.9741 -0.1367 42 1 1.6604 -5.4751 -1.5690 43 1 2.8695 -3.3598 -1.3899 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363054551.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:03 Heat of formation + Delta-G solvation = -40.642498 kcal Electronic energy + Delta-G solvation = -26666.737776 eV Core-core repulsion = 22869.026571 eV Total energy + Delta-G solvation = -3797.711205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52161 -40.85262 -39.07637 -38.08507 -36.25025 -35.57592 -33.81925 -32.56358 -32.06450 -31.31416 -29.80059 -27.90741 -27.27556 -25.25925 -24.53816 -23.24963 -22.77115 -22.41131 -20.49435 -19.32417 -18.67530 -18.07763 -17.65200 -17.44947 -17.27959 -16.84381 -16.63733 -15.88117 -15.55834 -15.39447 -15.20297 -15.08218 -14.75339 -14.50977 -14.37037 -14.20134 -13.99387 -13.66327 -13.56761 -13.29459 -13.21844 -12.90134 -12.82838 -12.72733 -12.54221 -12.53741 -12.30475 -11.73813 -11.50244 -11.27249 -11.11442 -10.81460 -10.63074 -10.40653 -10.07570 -9.51148 -9.47707 -9.29733 -8.68839 -6.44948 0.08062 0.30704 0.57790 1.16480 1.40510 1.45031 1.53360 1.99371 2.18296 2.22471 2.77370 2.80091 3.36662 3.45849 3.69111 3.71638 3.82196 3.92179 3.97133 4.08623 4.13896 4.24819 4.33154 4.42447 4.44918 4.52745 4.60719 4.74807 4.77135 4.87704 4.97508 5.01252 5.07497 5.16151 5.21194 5.27704 5.34531 5.61655 5.65285 5.73155 5.83557 6.01932 6.03885 6.27518 6.48315 6.60070 6.61237 6.83650 6.93354 6.98158 7.39016 8.24527 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.033524 B = 0.002383 C = 0.002297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.013005 B =11745.637984 C =12188.277560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.609 5.609 3 C 0.091 3.909 4 C 0.142 3.858 5 H 0.118 0.882 6 O -0.566 6.566 7 C -0.169 4.169 8 C -0.066 4.066 9 C -0.163 4.163 10 C 0.083 3.917 11 N -0.513 5.513 12 C 0.090 3.910 13 C 0.581 3.419 14 O -0.591 6.591 15 C -0.278 4.278 16 C -0.063 4.063 17 C -0.192 4.192 18 C 0.097 3.903 19 C -0.481 4.481 20 H 0.079 0.921 21 C 0.036 3.964 22 N -0.807 5.807 23 Si 0.987 3.013 24 H -0.260 1.260 25 H -0.265 1.265 26 H -0.261 1.261 27 C -0.250 4.250 28 C -0.040 4.040 29 H 0.067 0.933 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.116 0.884 33 H 0.071 0.929 34 H 0.379 0.621 35 H 0.165 0.835 36 H 0.171 0.829 37 H 0.180 0.820 38 H 0.146 0.854 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.294 0.706 42 H 0.100 0.900 43 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.859 19.040 -0.110 19.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C -0.031 4.031 4 C 0.081 3.919 5 H 0.135 0.865 6 O -0.373 6.373 7 C -0.172 4.172 8 C -0.092 4.092 9 C -0.182 4.182 10 C -0.074 4.074 11 N -0.222 5.222 12 C -0.066 4.066 13 C 0.375 3.625 14 O -0.474 6.474 15 C -0.282 4.282 16 C -0.082 4.082 17 C -0.211 4.211 18 C 0.094 3.906 19 C -0.509 4.509 20 H 0.097 0.903 21 C -0.182 4.182 22 N -0.431 5.431 23 Si 0.808 3.192 24 H -0.185 1.185 25 H -0.189 1.189 26 H -0.185 1.185 27 C -0.270 4.270 28 C -0.060 4.060 29 H 0.086 0.914 30 H 0.118 0.882 31 H 0.080 0.920 32 H 0.134 0.866 33 H 0.089 0.911 34 H 0.228 0.772 35 H 0.182 0.818 36 H 0.189 0.811 37 H 0.197 0.803 38 H 0.163 0.837 39 H 0.147 0.853 40 H 0.135 0.865 41 H 0.105 0.895 42 H 0.119 0.881 43 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.618 19.126 -0.365 19.198 hybrid contribution -0.567 -0.954 0.183 1.125 sum 1.051 18.172 -0.182 18.203 Atomic orbital electron populations 1.22203 0.78045 1.04111 1.02308 1.47574 1.07737 1.04867 1.73845 1.22215 0.98678 0.85597 0.96660 1.21220 0.94247 0.83193 0.93229 0.86467 1.86604 1.34133 1.59681 1.56837 1.21462 0.95691 0.97084 1.02956 1.21836 1.02153 0.90933 0.94255 1.22524 0.95078 1.00508 1.00088 1.23368 0.93592 0.96019 0.94394 1.67702 1.42009 0.99353 1.13131 1.22550 0.91677 0.96666 0.95743 1.18407 0.86209 0.84215 0.73701 1.90577 1.15577 1.88188 1.53069 1.19184 1.00224 0.95400 1.13402 1.21041 0.92455 0.97378 0.97293 1.21108 1.01867 0.94718 1.03448 1.18135 0.91031 0.93763 0.87672 1.20023 0.92928 0.94929 1.42987 0.90285 1.26840 0.98245 1.01992 0.91092 1.69729 1.10127 1.30009 1.33278 0.85113 0.77456 0.76966 0.79705 1.18501 1.18880 1.18487 1.20852 1.00330 0.98081 1.07690 1.20399 0.96879 0.92583 0.96092 0.91446 0.88224 0.92010 0.86574 0.91093 0.77151 0.81792 0.81134 0.80341 0.83653 0.85316 0.86485 0.89490 0.88148 0.88375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.90 8.87 127.77 1.13 3.04 16 2 N -0.61 -18.51 2.83 -850.42 -2.40 -20.92 16 3 C 0.09 2.15 5.13 86.38 0.44 2.59 16 4 C 0.14 3.18 3.50 29.85 0.10 3.28 16 5 H 0.12 2.36 8.06 -2.38 -0.02 2.34 16 6 O -0.57 -17.04 12.06 -147.28 -1.78 -18.81 16 7 C -0.17 -3.28 5.02 -19.77 -0.10 -3.38 16 8 C -0.07 -0.91 9.84 22.46 0.22 -0.68 16 9 C -0.16 -1.92 10.11 22.36 0.23 -1.70 16 10 C 0.08 1.32 11.18 84.69 0.95 2.27 16 11 N -0.51 -11.70 10.36 -195.84 -2.03 -13.73 16 12 C 0.09 2.04 10.49 84.67 0.89 2.93 16 13 C 0.58 23.63 6.77 86.73 0.59 24.21 16 14 O -0.59 -26.52 15.60 -2.29 -0.04 -26.56 16 15 C -0.28 -12.58 5.26 -19.94 -0.10 -12.68 16 16 C -0.06 -2.76 7.51 22.25 0.17 -2.59 16 17 C -0.19 -9.52 8.62 22.47 0.19 -9.33 16 18 C 0.10 5.10 5.57 -21.28 -0.12 4.98 16 19 C -0.48 -24.76 9.06 23.46 0.21 -24.55 16 20 H 0.08 3.95 7.88 -2.91 -0.02 3.93 16 21 C 0.04 1.67 5.25 85.35 0.45 2.12 16 22 N -0.81 -38.63 10.73 21.87 0.23 -38.39 16 23 Si 0.99 35.63 29.58 68.60 2.03 37.66 16 24 H -0.26 -9.11 7.11 99.48 0.71 -8.41 16 25 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 26 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 27 C -0.25 -12.60 9.73 22.47 0.22 -12.38 16 28 C -0.04 -1.95 9.56 22.25 0.21 -1.73 16 29 H 0.07 1.55 6.78 -2.39 -0.02 1.53 16 30 H 0.10 1.69 8.03 -2.39 -0.02 1.68 16 31 H 0.06 1.96 5.91 -2.38 -0.01 1.94 16 32 H 0.12 1.89 8.07 -2.39 -0.02 1.87 16 33 H 0.07 1.93 7.36 -2.39 -0.02 1.92 16 34 H 0.38 10.88 6.99 -74.05 -0.52 10.37 16 35 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 37 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.15 3.31 6.64 -2.91 -0.02 3.29 16 39 H 0.13 4.72 5.23 -2.91 -0.02 4.70 16 40 H 0.12 5.91 6.08 -2.91 -0.02 5.89 16 41 H 0.29 12.52 8.29 -92.71 -0.77 11.75 16 42 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.10 4.56 8.04 -2.91 -0.02 4.54 16 Total: -1.00 -67.68 359.56 2.23 -65.44 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: 0.54 Total: 38.92 kcal Atomic # 6 Polarization: -29.29 SS G_CDS: 5.68 Total: -23.61 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -4.20 Total: -73.04 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.81 Total: -45.37 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Total: -67.68 2.23 -65.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363054551.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.800 kcal (2) G-P(sol) polarization free energy of solvation -67.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds