Wall clock time and date at job start Tue Mar 31 2020 14:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99981 * 2 1 4 4 C 1.52997 * 109.47174 * 90.00408 * 3 2 1 5 5 H 1.08999 * 109.46571 * 304.99386 * 4 3 2 6 6 O 1.42894 * 109.47435 * 64.99789 * 4 3 2 7 7 C 1.50706 * 109.47046 * 185.00031 * 4 3 2 8 8 C 1.38678 * 120.41762 * 99.71446 * 7 4 3 9 9 C 1.38631 * 118.41538 * 179.77934 * 8 7 4 10 10 C 1.38227 * 119.16042 * 0.51979 * 9 8 7 11 11 N 1.31844 * 120.76682 * 359.72193 * 10 9 8 12 12 C 1.31886 * 121.72710 * 0.02562 * 11 10 9 13 13 C 1.34776 * 119.99887 * 179.97438 * 2 1 3 14 14 O 1.21586 * 119.99984 * 184.57211 * 13 2 1 15 15 C 1.47646 * 120.00167 * 4.57426 * 13 2 1 16 16 C 1.40012 * 119.89414 * 22.33498 * 15 13 2 17 17 C 1.36312 * 120.10896 * 179.72001 * 16 15 13 18 18 C 1.40897 * 119.88710 * 0.56967 * 17 16 15 19 19 C 1.41111 * 120.10103 * 179.67511 * 18 17 16 20 20 H 1.07993 * 120.00095 * 209.03131 * 19 18 17 21 21 C 1.40223 * 119.99964 * 29.03646 * 19 18 17 22 22 N 1.30653 * 120.00216 * 10.23250 * 21 19 18 23 23 Si 1.86806 * 120.00189 * 190.23484 * 21 19 18 24 24 H 1.48501 * 109.47085 * 89.99674 * 23 21 19 25 25 H 1.48492 * 109.47232 * 210.00060 * 23 21 19 26 26 H 1.48508 * 109.46725 * 329.99812 * 23 21 19 27 27 C 1.40885 * 119.79404 * 359.70176 * 18 17 16 28 28 C 1.36317 * 119.89293 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47118 * 84.49523 * 1 2 3 30 30 H 1.08998 * 109.46995 * 204.49569 * 1 2 3 31 31 H 1.08997 * 109.46947 * 324.49531 * 1 2 3 32 32 H 1.09003 * 109.47380 * 329.99677 * 3 2 1 33 33 H 1.09007 * 109.46953 * 210.00147 * 3 2 1 34 34 H 0.96704 * 114.00041 * 59.99936 * 6 4 3 35 35 H 1.07994 * 120.78799 * 0.02614 * 8 7 4 36 36 H 1.08003 * 120.41662 * 180.22276 * 9 8 7 37 37 H 1.08000 * 119.61246 * 179.74440 * 10 9 8 38 38 H 1.08000 * 119.62199 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.94580 * 359.97438 * 16 15 13 40 40 H 1.08002 * 120.05858 * 180.24757 * 17 16 15 41 41 H 0.96996 * 119.99945 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.05200 * 179.97438 * 27 18 17 43 43 H 1.08001 * 119.94946 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5062 1.7549 1.9814 6 8 3.3210 0.7724 2.0813 7 6 3.0963 3.0730 1.4442 8 6 2.3361 4.2083 1.6811 9 6 2.9716 5.4404 1.6778 10 6 4.3302 5.4967 1.4295 11 7 5.0207 4.3966 1.2032 12 6 4.4504 3.2074 1.2037 13 6 2.1389 -1.1672 0.0005 14 8 3.3518 -1.1689 0.0845 15 6 1.4042 -2.4439 -0.1009 16 6 0.1180 -2.4668 -0.6537 17 6 -0.5620 -3.6439 -0.7546 18 6 0.0268 -4.8369 -0.2906 19 6 -0.6758 -6.0569 -0.3866 20 1 -0.4932 -6.8431 0.3309 21 6 -1.6110 -6.2484 -1.4138 22 7 -1.6904 -5.3879 -2.3938 23 14 -2.7434 -7.7337 -1.3810 24 1 -3.9889 -7.3905 -0.6488 25 1 -3.0800 -8.1302 -2.7719 26 1 -2.0612 -8.8611 -0.6962 27 6 1.3190 -4.8078 0.2701 28 6 1.9938 -3.6269 0.3608 29 1 -0.3633 0.0986 -1.0229 30 1 -0.3633 -0.9352 0.4261 31 1 -0.3633 0.8366 0.5968 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1383 -0.5139 34 1 4.1837 0.6810 1.6541 35 1 1.2750 4.1341 1.8677 36 1 2.4114 6.3452 1.8621 37 1 4.8320 6.4531 1.4210 38 1 5.0485 2.3284 1.0139 39 1 -0.3345 -1.5510 -1.0044 40 1 -1.5525 -3.6613 -1.1848 41 1 -2.3370 -5.5206 -3.1045 42 1 1.7741 -5.7197 0.6274 43 1 2.9846 -3.6037 0.7900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363054552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:07 Heat of formation + Delta-G solvation = -8.497522 kcal Electronic energy + Delta-G solvation = -26603.491090 eV Core-core repulsion = 22807.173795 eV Total energy + Delta-G solvation = -3796.317295 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.65566 -39.52406 -37.55629 -36.71471 -34.94864 -33.81543 -32.99947 -31.75656 -30.60186 -29.52152 -28.54638 -26.54605 -25.86661 -24.14469 -23.82515 -21.94424 -21.18075 -20.99203 -19.02846 -17.80259 -17.49636 -16.84198 -16.71171 -16.27839 -15.85032 -15.66640 -15.21963 -14.57661 -14.37839 -14.28050 -14.12819 -13.68521 -13.54116 -13.35992 -13.11954 -12.89591 -12.60108 -12.43982 -12.30042 -11.88203 -11.70513 -11.64396 -11.39120 -11.38133 -11.20164 -10.79996 -10.57856 -10.41683 -10.09846 -9.98104 -9.68783 -9.45180 -9.39396 -9.32100 -8.90814 -8.22430 -7.64957 -7.46750 -6.94496 -4.59729 0.78975 0.98082 2.25546 2.94035 2.96618 3.00014 3.01856 3.35979 3.54466 3.76935 3.84564 4.14061 4.38074 4.52303 4.54520 4.56360 4.67014 4.76339 4.93595 5.07399 5.21180 5.33949 5.40016 5.49024 5.51804 5.63322 5.75521 5.79102 5.89202 6.03967 6.11210 6.15993 6.31989 6.38083 6.77707 6.84537 6.88050 7.06209 7.14855 7.46833 7.60016 7.66771 7.70390 7.80182 7.88142 8.04867 8.11175 8.43391 8.66755 8.77100 9.00150 9.97137 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.035924 B = 0.002320 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.245554 B =12066.200236 C =12509.073784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.619 5.619 3 C 0.094 3.906 4 C 0.137 3.863 5 H 0.106 0.894 6 O -0.538 6.538 7 C -0.163 4.163 8 C -0.066 4.066 9 C -0.172 4.172 10 C 0.093 3.907 11 N -0.482 5.482 12 C 0.109 3.891 13 C 0.580 3.420 14 O -0.565 6.565 15 C -0.275 4.275 16 C -0.090 4.090 17 C -0.173 4.173 18 C 0.127 3.873 19 C -0.447 4.447 20 H 0.082 0.918 21 C 0.072 3.928 22 N -0.784 5.784 23 Si 0.916 3.084 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.260 1.260 27 C -0.234 4.234 28 C -0.026 4.026 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.378 0.622 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.155 0.845 39 H 0.115 0.885 40 H 0.123 0.877 41 H 0.284 0.716 42 H 0.098 0.902 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.985 17.003 3.957 17.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.353 5.353 3 C -0.030 4.030 4 C 0.075 3.925 5 H 0.124 0.876 6 O -0.344 6.344 7 C -0.165 4.165 8 C -0.093 4.093 9 C -0.192 4.192 10 C -0.064 4.064 11 N -0.190 5.190 12 C -0.047 4.047 13 C 0.376 3.624 14 O -0.446 6.446 15 C -0.279 4.279 16 C -0.108 4.108 17 C -0.193 4.193 18 C 0.124 3.876 19 C -0.476 4.476 20 H 0.101 0.899 21 C -0.147 4.147 22 N -0.408 5.408 23 Si 0.740 3.260 24 H -0.191 1.191 25 H -0.201 1.201 26 H -0.184 1.184 27 C -0.254 4.254 28 C -0.045 4.045 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.227 0.773 35 H 0.154 0.846 36 H 0.153 0.847 37 H 0.172 0.828 38 H 0.172 0.828 39 H 0.132 0.868 40 H 0.140 0.860 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.886 17.027 3.990 17.590 hybrid contribution -1.148 -0.442 -0.411 1.297 sum 0.738 16.585 3.579 16.983 Atomic orbital electron populations 1.22470 0.80062 1.03959 1.00800 1.47550 1.06519 1.05060 1.76130 1.21977 0.98852 0.86500 0.95655 1.21191 0.93528 0.83131 0.94612 0.87623 1.86643 1.29733 1.62018 1.56030 1.21683 0.96121 0.97430 1.01308 1.21476 1.00416 0.91820 0.95543 1.22148 0.96428 0.98612 1.01978 1.22809 0.91481 0.97105 0.94981 1.67714 1.40051 0.98720 1.12497 1.22570 0.92020 0.95520 0.94639 1.18629 0.86682 0.83369 0.73744 1.90577 1.14467 1.87390 1.52129 1.18887 0.98084 0.91868 1.19075 1.21353 0.93498 0.98252 0.97724 1.21085 1.00992 0.91108 1.06068 1.17832 0.89792 0.93092 0.86852 1.19805 1.17194 1.00225 1.10338 0.89944 1.26056 0.96379 0.98066 0.94243 1.69714 1.29550 1.34118 1.07415 0.86177 0.80249 0.81095 0.78501 1.19080 1.20080 1.18405 1.20767 0.96183 0.96314 1.12090 1.20338 0.97246 0.91633 0.95282 0.92747 0.87878 0.92973 0.90379 0.89720 0.77292 0.84649 0.84671 0.82773 0.82799 0.86796 0.85965 0.90450 0.88421 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.94 8.67 59.85 0.52 1.46 16 2 N -0.62 -9.90 2.86 -182.77 -0.52 -10.43 16 3 C 0.09 1.21 5.11 -4.05 -0.02 1.19 16 4 C 0.14 1.64 3.47 -27.88 -0.10 1.54 16 5 H 0.11 1.22 8.03 -51.93 -0.42 0.80 16 6 O -0.54 -8.01 11.93 -47.87 -0.57 -8.58 16 7 C -0.16 -1.70 4.98 -104.48 -0.52 -2.22 16 8 C -0.07 -0.57 9.82 -39.27 -0.39 -0.96 16 9 C -0.17 -1.33 10.11 -39.44 -0.40 -1.72 16 10 C 0.09 0.84 11.18 -17.55 -0.20 0.64 16 11 N -0.48 -5.57 10.36 -13.25 -0.14 -5.71 16 12 C 0.11 1.22 10.49 -17.55 -0.18 1.04 16 13 C 0.58 11.88 7.19 -12.42 -0.09 11.79 16 14 O -0.56 -12.53 14.84 -7.35 -0.11 -12.64 16 15 C -0.27 -6.15 5.58 -104.73 -0.58 -6.74 16 16 C -0.09 -1.93 7.47 -39.61 -0.30 -2.23 16 17 C -0.17 -4.17 8.60 -39.27 -0.34 -4.50 16 18 C 0.13 3.23 5.55 -106.80 -0.59 2.63 16 19 C -0.45 -11.13 9.05 -37.75 -0.34 -11.47 16 20 H 0.08 1.97 7.87 -52.49 -0.41 1.55 16 21 C 0.07 1.69 5.26 -17.31 -0.09 1.60 16 22 N -0.78 -18.88 10.82 55.56 0.60 -18.28 16 23 Si 0.92 17.44 29.57 -169.99 -5.03 12.41 16 24 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 25 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 27 C -0.23 -5.65 9.73 -39.27 -0.38 -6.03 16 28 C -0.03 -0.60 9.52 -39.61 -0.38 -0.98 16 29 H 0.05 0.68 7.18 -51.93 -0.37 0.31 16 30 H 0.10 1.61 4.94 -51.93 -0.26 1.35 16 31 H 0.05 0.54 8.11 -51.93 -0.42 0.12 16 32 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.08 1.18 7.49 -51.92 -0.39 0.79 16 34 H 0.38 5.07 7.12 45.56 0.32 5.40 16 35 H 0.14 0.87 8.06 -52.49 -0.42 0.44 16 36 H 0.14 0.66 8.06 -52.48 -0.42 0.24 16 37 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.15 1.57 6.80 -52.49 -0.36 1.22 16 39 H 0.11 2.09 4.14 -52.48 -0.22 1.87 16 40 H 0.12 2.99 6.20 -52.49 -0.33 2.66 16 41 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.10 2.23 7.80 -52.49 -0.41 1.82 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -30.27 357.79 -9.25 -39.52 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -4.50 Total: 13.25 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -4.38 Total: -14.96 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.06 Total: -34.41 kcal Atomic # 8 Polarization: -20.54 SS G_CDS: -0.68 Total: -21.22 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.27 -9.25 -39.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363054552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.027 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds