Wall clock time and date at job start Tue Mar 31 2020 14:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99981 * 2 1 4 4 C 1.52997 * 109.47174 * 90.00408 * 3 2 1 5 5 H 1.08999 * 109.46571 * 304.99386 * 4 3 2 6 6 O 1.42894 * 109.47435 * 64.99789 * 4 3 2 7 7 C 1.50706 * 109.47046 * 185.00031 * 4 3 2 8 8 C 1.38678 * 120.41762 * 99.71446 * 7 4 3 9 9 C 1.38631 * 118.41538 * 179.77934 * 8 7 4 10 10 C 1.38227 * 119.16042 * 0.51979 * 9 8 7 11 11 N 1.31844 * 120.76682 * 359.72193 * 10 9 8 12 12 C 1.31886 * 121.72710 * 0.02562 * 11 10 9 13 13 C 1.34776 * 119.99887 * 179.97438 * 2 1 3 14 14 O 1.21586 * 119.99984 * 184.57211 * 13 2 1 15 15 C 1.47646 * 120.00167 * 4.57426 * 13 2 1 16 16 C 1.40012 * 119.89414 * 22.33498 * 15 13 2 17 17 C 1.36312 * 120.10896 * 179.72001 * 16 15 13 18 18 C 1.40897 * 119.88710 * 0.56967 * 17 16 15 19 19 C 1.41111 * 120.10103 * 179.67511 * 18 17 16 20 20 H 1.07993 * 120.00095 * 209.03131 * 19 18 17 21 21 C 1.40223 * 119.99964 * 29.03646 * 19 18 17 22 22 N 1.30653 * 120.00216 * 10.23250 * 21 19 18 23 23 Si 1.86806 * 120.00189 * 190.23484 * 21 19 18 24 24 H 1.48501 * 109.47085 * 89.99674 * 23 21 19 25 25 H 1.48492 * 109.47232 * 210.00060 * 23 21 19 26 26 H 1.48508 * 109.46725 * 329.99812 * 23 21 19 27 27 C 1.40885 * 119.79404 * 359.70176 * 18 17 16 28 28 C 1.36317 * 119.89293 * 359.97438 * 27 18 17 29 29 H 1.08998 * 109.47118 * 84.49523 * 1 2 3 30 30 H 1.08998 * 109.46995 * 204.49569 * 1 2 3 31 31 H 1.08997 * 109.46947 * 324.49531 * 1 2 3 32 32 H 1.09003 * 109.47380 * 329.99677 * 3 2 1 33 33 H 1.09007 * 109.46953 * 210.00147 * 3 2 1 34 34 H 0.96704 * 114.00041 * 59.99936 * 6 4 3 35 35 H 1.07994 * 120.78799 * 0.02614 * 8 7 4 36 36 H 1.08003 * 120.41662 * 180.22276 * 9 8 7 37 37 H 1.08000 * 119.61246 * 179.74440 * 10 9 8 38 38 H 1.08000 * 119.62199 * 179.97438 * 12 11 10 39 39 H 1.08006 * 119.94580 * 359.97438 * 16 15 13 40 40 H 1.08002 * 120.05858 * 180.24757 * 17 16 15 41 41 H 0.96996 * 119.99945 * 179.97438 * 22 21 19 42 42 H 1.07996 * 120.05200 * 179.97438 * 27 18 17 43 43 H 1.08001 * 119.94946 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 1 1.5062 1.7549 1.9814 6 8 3.3210 0.7724 2.0813 7 6 3.0963 3.0730 1.4442 8 6 2.3361 4.2083 1.6811 9 6 2.9716 5.4404 1.6778 10 6 4.3302 5.4967 1.4295 11 7 5.0207 4.3966 1.2032 12 6 4.4504 3.2074 1.2037 13 6 2.1389 -1.1672 0.0005 14 8 3.3518 -1.1689 0.0845 15 6 1.4042 -2.4439 -0.1009 16 6 0.1180 -2.4668 -0.6537 17 6 -0.5620 -3.6439 -0.7546 18 6 0.0268 -4.8369 -0.2906 19 6 -0.6758 -6.0569 -0.3866 20 1 -0.4932 -6.8431 0.3309 21 6 -1.6110 -6.2484 -1.4138 22 7 -1.6904 -5.3879 -2.3938 23 14 -2.7434 -7.7337 -1.3810 24 1 -3.9889 -7.3905 -0.6488 25 1 -3.0800 -8.1302 -2.7719 26 1 -2.0612 -8.8611 -0.6962 27 6 1.3190 -4.8078 0.2701 28 6 1.9938 -3.6269 0.3608 29 1 -0.3633 0.0986 -1.0229 30 1 -0.3633 -0.9352 0.4261 31 1 -0.3633 0.8366 0.5968 32 1 1.6085 2.0284 -0.5139 33 1 3.1500 1.1383 -0.5139 34 1 4.1837 0.6810 1.6541 35 1 1.2750 4.1341 1.8677 36 1 2.4114 6.3452 1.8621 37 1 4.8320 6.4531 1.4210 38 1 5.0485 2.3284 1.0139 39 1 -0.3345 -1.5510 -1.0044 40 1 -1.5525 -3.6613 -1.1848 41 1 -2.3370 -5.5206 -3.1045 42 1 1.7741 -5.7197 0.6274 43 1 2.9846 -3.6037 0.7900 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363054552.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:06 Heat of formation + Delta-G solvation = -26.678920 kcal Electronic energy + Delta-G solvation = -26604.279494 eV Core-core repulsion = 22807.173795 eV Total energy + Delta-G solvation = -3797.105699 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.52271 -40.88911 -39.06162 -38.04680 -36.33917 -35.56479 -33.79962 -32.61864 -32.09926 -31.33702 -29.73371 -27.95252 -27.32113 -25.26404 -24.53852 -23.22973 -22.76376 -22.40818 -20.52360 -19.31910 -18.63983 -18.02608 -17.65466 -17.44821 -17.30248 -16.82025 -16.60290 -15.90752 -15.45097 -15.40493 -15.20200 -14.99827 -14.80679 -14.56164 -14.37952 -14.25043 -13.99244 -13.72193 -13.60602 -13.25356 -13.17259 -12.95419 -12.83313 -12.64654 -12.54560 -12.34746 -12.24129 -11.71243 -11.45514 -11.16340 -11.16151 -10.81079 -10.56333 -10.39743 -10.07026 -9.52756 -9.45487 -9.25651 -8.69959 -6.46917 0.08424 0.30980 0.50852 1.15749 1.40389 1.44302 1.53608 2.09367 2.18741 2.22981 2.79012 2.81792 3.39035 3.49165 3.68132 3.72108 3.81821 3.94000 3.97956 4.09292 4.15487 4.21285 4.33722 4.45758 4.51315 4.53567 4.60404 4.71491 4.77631 4.88129 4.96828 4.98345 5.07181 5.16342 5.19642 5.28919 5.33559 5.60599 5.67004 5.73493 5.84036 5.99192 6.03403 6.27370 6.52287 6.59242 6.67050 6.82424 6.92671 6.98470 7.44208 8.24549 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.035924 B = 0.002320 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.245554 B =12066.200236 C =12509.073784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.611 5.611 3 C 0.094 3.906 4 C 0.143 3.857 5 H 0.116 0.884 6 O -0.564 6.564 7 C -0.169 4.169 8 C -0.066 4.066 9 C -0.163 4.163 10 C 0.083 3.917 11 N -0.513 5.513 12 C 0.090 3.910 13 C 0.574 3.426 14 O -0.590 6.590 15 C -0.282 4.282 16 C -0.076 4.076 17 C -0.192 4.192 18 C 0.099 3.901 19 C -0.481 4.481 20 H 0.080 0.920 21 C 0.035 3.965 22 N -0.811 5.811 23 Si 0.989 3.011 24 H -0.257 1.257 25 H -0.267 1.267 26 H -0.261 1.261 27 C -0.250 4.250 28 C -0.039 4.039 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.069 0.931 34 H 0.380 0.620 35 H 0.163 0.837 36 H 0.171 0.829 37 H 0.179 0.821 38 H 0.148 0.852 39 H 0.150 0.850 40 H 0.116 0.884 41 H 0.294 0.706 42 H 0.100 0.900 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.000 19.554 3.905 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.342 5.342 3 C -0.029 4.029 4 C 0.082 3.918 5 H 0.134 0.866 6 O -0.370 6.370 7 C -0.172 4.172 8 C -0.092 4.092 9 C -0.182 4.182 10 C -0.073 4.073 11 N -0.222 5.222 12 C -0.066 4.066 13 C 0.368 3.632 14 O -0.473 6.473 15 C -0.286 4.286 16 C -0.094 4.094 17 C -0.212 4.212 18 C 0.096 3.904 19 C -0.509 4.509 20 H 0.098 0.902 21 C -0.182 4.182 22 N -0.436 5.436 23 Si 0.809 3.191 24 H -0.182 1.182 25 H -0.191 1.191 26 H -0.185 1.185 27 C -0.270 4.270 28 C -0.058 4.058 29 H 0.091 0.909 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.087 0.913 34 H 0.229 0.771 35 H 0.181 0.819 36 H 0.188 0.812 37 H 0.196 0.804 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.134 0.866 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.110 19.622 3.941 20.014 hybrid contribution -0.463 -1.014 -0.369 1.174 sum -0.574 18.608 3.572 18.956 Atomic orbital electron populations 1.22600 0.78265 1.04630 1.02543 1.47522 1.07710 1.04783 1.74232 1.22192 0.98453 0.85528 0.96750 1.21189 0.93501 0.83415 0.93655 0.86621 1.86598 1.30271 1.63231 1.56949 1.21486 0.95860 0.97218 1.02645 1.21846 1.01676 0.91317 0.94341 1.22524 0.95954 0.99635 1.00136 1.23356 0.92533 0.97286 0.94168 1.67697 1.41243 0.99443 1.13813 1.22572 0.92694 0.95581 0.95753 1.18412 0.86350 0.84196 0.74222 1.90564 1.15411 1.87955 1.53363 1.19251 0.98507 0.92777 1.18086 1.21691 0.92831 0.98849 0.96072 1.21117 1.01125 0.91700 1.07217 1.18184 0.90389 0.94100 0.87709 1.20030 1.18974 1.00398 1.11506 0.90161 1.26870 0.97144 1.00965 0.93223 1.69746 1.30194 1.35742 1.07921 0.85090 0.78052 0.77143 0.78803 1.18170 1.19134 1.18470 1.20888 0.96360 0.96867 1.12860 1.20483 0.97399 0.92176 0.95743 0.90949 0.90116 0.88777 0.86889 0.91296 0.77117 0.81908 0.81194 0.80369 0.83513 0.83244 0.86622 0.89529 0.88162 0.88309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.45 8.67 127.77 1.11 2.56 16 2 N -0.61 -18.35 2.86 -850.41 -2.43 -20.78 16 3 C 0.09 2.20 5.11 86.38 0.44 2.65 16 4 C 0.14 3.17 3.47 29.85 0.10 3.27 16 5 H 0.12 2.30 8.03 -2.39 -0.02 2.28 16 6 O -0.56 -16.79 11.93 -136.90 -1.63 -18.42 16 7 C -0.17 -3.22 4.98 -19.77 -0.10 -3.32 16 8 C -0.07 -0.90 9.82 22.47 0.22 -0.68 16 9 C -0.16 -1.90 10.11 22.36 0.23 -1.68 16 10 C 0.08 1.30 11.18 84.69 0.95 2.25 16 11 N -0.51 -11.47 10.36 -195.85 -2.03 -13.50 16 12 C 0.09 1.99 10.49 84.67 0.89 2.88 16 13 C 0.57 23.40 7.19 86.73 0.62 24.02 16 14 O -0.59 -26.60 14.84 8.09 0.12 -26.48 16 15 C -0.28 -12.75 5.58 -19.93 -0.11 -12.86 16 16 C -0.08 -3.28 7.47 22.25 0.17 -3.11 16 17 C -0.19 -9.43 8.60 22.47 0.19 -9.24 16 18 C 0.10 5.20 5.55 -21.28 -0.12 5.09 16 19 C -0.48 -24.70 9.05 23.46 0.21 -24.49 16 20 H 0.08 3.98 7.87 -2.91 -0.02 3.96 16 21 C 0.03 1.65 5.26 85.35 0.45 2.10 16 22 N -0.81 -39.41 10.82 21.87 0.24 -39.17 16 23 Si 0.99 35.60 29.57 68.60 2.03 37.63 16 24 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 25 H -0.27 -9.14 7.11 99.48 0.71 -8.44 16 26 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 27 C -0.25 -12.63 9.73 22.47 0.22 -12.41 16 28 C -0.04 -1.88 9.52 22.25 0.21 -1.67 16 29 H 0.07 1.51 7.18 -2.39 -0.02 1.50 16 30 H 0.08 2.34 4.94 -2.39 -0.01 2.33 16 31 H 0.09 1.51 8.11 -2.39 -0.02 1.49 16 32 H 0.11 1.89 8.07 -2.39 -0.02 1.88 16 33 H 0.07 1.88 7.49 -2.38 -0.02 1.86 16 34 H 0.38 10.68 7.12 -74.05 -0.53 10.15 16 35 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 36 H 0.17 0.77 8.06 -2.91 -0.02 0.75 16 37 H 0.18 1.71 8.06 -2.91 -0.02 1.68 16 38 H 0.15 3.21 6.80 -2.91 -0.02 3.19 16 39 H 0.15 5.21 4.14 -2.91 -0.01 5.19 16 40 H 0.12 5.76 6.20 -2.91 -0.02 5.74 16 41 H 0.29 12.73 8.29 -92.71 -0.77 11.96 16 42 H 0.10 4.81 8.06 -2.91 -0.02 4.78 16 43 H 0.10 4.67 7.80 -2.91 -0.02 4.64 16 Total: -1.00 -68.42 357.79 2.51 -65.91 By element: Atomic # 1 Polarization: 38.92 SS G_CDS: 0.53 Total: 39.45 kcal Atomic # 6 Polarization: -30.31 SS G_CDS: 5.68 Total: -24.63 kcal Atomic # 7 Polarization: -69.23 SS G_CDS: -4.22 Total: -73.45 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.51 Total: -44.91 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Total: -68.42 2.51 -65.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363054552.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.235 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds