Wall clock time and date at job start Tue Mar 31 2020 14:37:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 117.00410 * 2 1 4 4 N 1.32279 * 119.68072 * 359.97438 * 3 2 1 5 5 C 1.31933 * 121.64637 * 180.02562 * 4 3 2 6 6 C 1.38097 * 120.83290 * 359.97438 * 5 4 3 7 7 C 1.38781 * 119.28772 * 359.72153 * 6 5 4 8 8 C 1.38427 * 118.48453 * 0.54230 * 7 6 5 9 9 C 1.50696 * 120.44347 * 179.73357 * 8 7 6 10 10 N 1.46500 * 109.47258 * 259.72319 * 9 8 7 11 11 C 1.34777 * 120.00066 * 180.02562 * 10 9 8 12 12 O 1.21284 * 119.99987 * 359.97438 * 11 10 9 13 13 C 1.50691 * 120.00237 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.47502 * 59.99741 * 13 11 10 15 15 C 1.50703 * 109.47089 * 300.00071 * 13 11 10 16 16 H 1.08001 * 119.99695 * 325.09683 * 15 13 11 17 17 C 1.37878 * 120.00092 * 145.09568 * 15 13 11 18 18 N 1.31512 * 119.99890 * 184.98420 * 17 15 13 19 19 Si 1.86800 * 120.00076 * 4.98609 * 17 15 13 20 20 H 1.48501 * 109.47174 * 84.66495 * 19 17 15 21 21 H 1.48498 * 109.46748 * 204.66821 * 19 17 15 22 22 H 1.48498 * 109.46658 * 324.66664 * 19 17 15 23 23 C 1.50696 * 109.47429 * 179.97438 * 13 11 10 24 24 C 1.38237 * 119.99972 * 65.02257 * 23 13 11 25 25 C 1.38235 * 119.99921 * 179.81077 * 24 23 13 26 26 C 1.38236 * 120.00103 * 0.39634 * 25 24 23 27 27 C 1.38236 * 119.99862 * 359.85500 * 26 25 24 28 28 C 1.38232 * 120.00157 * 245.29493 * 23 13 11 29 29 H 1.09002 * 109.46356 * 299.99811 * 1 2 3 30 30 H 1.08998 * 109.46849 * 59.98856 * 1 2 3 31 31 H 1.08991 * 109.47464 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.58496 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.35416 * 180.02562 * 6 5 4 34 34 H 1.08004 * 120.75837 * 180.29676 * 7 6 5 35 35 H 1.09002 * 109.46957 * 139.71853 * 9 8 7 36 36 H 1.09005 * 109.47140 * 19.72342 * 9 8 7 37 37 H 0.96992 * 120.00009 * 359.97438 * 10 9 8 38 38 H 0.97002 * 120.00277 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.00328 * 359.97438 * 24 23 13 40 40 H 1.08007 * 119.99552 * 180.22502 * 25 24 23 41 41 H 1.07995 * 119.99756 * 179.83432 * 26 25 24 42 42 H 1.07992 * 119.99997 * 179.97438 * 27 26 25 43 43 H 1.08000 * 119.99894 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3185 2.3142 -0.0005 5 6 1.8769 3.5096 -0.0010 6 6 3.2508 3.6490 -0.0005 7 6 4.0484 2.5134 0.0064 8 6 3.4323 1.2738 0.0011 9 6 4.2558 0.0117 0.0023 10 7 4.3224 -0.5291 -1.3576 11 6 5.0104 -1.6627 -1.5990 12 8 5.5747 -2.2347 -0.6906 13 6 5.0794 -2.2187 -2.9979 14 1 5.5412 -1.4848 -3.6584 15 6 3.6871 -2.5272 -3.4852 16 1 2.9405 -2.8882 -2.7933 17 6 3.3664 -2.3484 -4.8141 18 7 2.1280 -2.5231 -5.2210 19 14 4.6909 -1.8582 -6.0368 20 1 5.4007 -3.0733 -6.5113 21 1 4.0658 -1.1668 -7.1929 22 1 5.6589 -0.9450 -5.3781 23 6 5.9028 -3.4809 -2.9967 24 6 5.4584 -4.5955 -2.3104 25 6 6.2118 -5.7544 -2.3126 26 6 7.4136 -5.7963 -2.9943 27 6 7.8606 -4.6800 -3.6763 28 6 7.1053 -3.5223 -3.6773 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2516 4.3902 -0.0019 33 1 3.6997 4.6313 -0.0006 34 1 5.1254 2.5948 0.0118 35 1 3.7948 -0.7223 0.6631 36 1 5.2630 0.2354 0.3541 37 1 3.8708 -0.0719 -2.0841 38 1 1.9024 -2.3977 -6.1560 39 1 4.5212 -4.5617 -1.7747 40 1 5.8627 -6.6264 -1.7793 41 1 8.0035 -6.7009 -2.9937 42 1 8.7997 -4.7126 -4.2085 43 1 7.4545 -2.6502 -4.2102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411629178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:14 Heat of formation + Delta-G solvation = -12.428059 kcal Electronic energy + Delta-G solvation = -27274.827700 eV Core-core repulsion = 23478.339964 eV Total energy + Delta-G solvation = -3796.487736 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73847 -39.22452 -37.86886 -37.75596 -34.75522 -33.60622 -32.20022 -31.47227 -30.80045 -30.09511 -27.97940 -27.21136 -26.01179 -23.51663 -22.99491 -22.14920 -21.80184 -20.85907 -19.27293 -18.31257 -17.17076 -17.06245 -16.53872 -16.11514 -15.90888 -15.48266 -15.12603 -14.57890 -14.39850 -14.22022 -14.18265 -13.80318 -13.53910 -13.34572 -13.08290 -12.87515 -12.66614 -12.51811 -12.33795 -11.98890 -11.95136 -11.80143 -11.45364 -11.13641 -11.10474 -10.97429 -10.43422 -10.21726 -9.96832 -9.87719 -9.68160 -9.49395 -8.98389 -8.71103 -8.41321 -8.33292 -8.09520 -7.76821 -6.27298 -4.30511 1.00555 1.23607 2.19130 2.25657 3.16268 3.18523 3.24149 3.28770 3.60436 3.67027 4.18143 4.24306 4.26291 4.69097 4.74437 4.84195 4.91184 5.04172 5.18435 5.38404 5.42545 5.46471 5.58333 5.63166 5.64598 5.75588 5.76758 5.92836 5.99202 6.00368 6.18617 6.23664 6.33483 6.36381 6.37986 6.50599 6.78248 6.89262 7.13952 7.20555 7.29000 7.29547 7.32556 7.63373 7.79486 7.83856 8.23755 8.34983 8.74594 9.16494 9.30932 10.83761 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.003970 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.180643 B = 7050.973666 C = 7687.024986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.291 6.291 3 C 0.341 3.659 4 N -0.543 5.543 5 C 0.141 3.859 6 C -0.218 4.218 7 C -0.026 4.026 8 C -0.173 4.173 9 C 0.177 3.823 10 N -0.720 5.720 11 C 0.537 3.463 12 O -0.563 6.563 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.507 4.507 16 H 0.083 0.917 17 C 0.085 3.915 18 N -0.883 5.883 19 Si 0.865 3.135 20 H -0.266 1.266 21 H -0.286 1.286 22 H -0.262 1.262 23 C -0.026 4.026 24 C -0.072 4.072 25 C -0.129 4.129 26 C -0.144 4.144 27 C -0.129 4.129 28 C -0.137 4.137 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.136 0.864 34 H 0.142 0.858 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.405 0.595 38 H 0.268 0.732 39 H 0.117 0.883 40 H 0.110 0.890 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.195 9.565 8.098 12.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.196 6.196 3 C 0.161 3.839 4 N -0.267 5.267 5 C -0.015 4.015 6 C -0.238 4.238 7 C -0.052 4.052 8 C -0.176 4.176 9 C 0.053 3.947 10 N -0.372 5.372 11 C 0.326 3.674 12 O -0.442 6.442 13 C -0.003 4.003 14 H 0.090 0.910 15 C -0.544 4.544 16 H 0.101 0.899 17 C -0.120 4.120 18 N -0.519 5.519 19 Si 0.692 3.308 20 H -0.191 1.191 21 H -0.212 1.212 22 H -0.187 1.187 23 C -0.027 4.027 24 C -0.090 4.090 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.147 4.147 28 C -0.156 4.156 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.175 0.825 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.240 0.760 38 H 0.078 0.922 39 H 0.135 0.865 40 H 0.129 0.871 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.631 8.778 8.585 12.386 hybrid contribution 0.877 0.697 -1.229 1.663 sum 2.508 9.474 7.356 12.254 Atomic orbital electron populations 1.22874 0.77148 1.03310 1.01989 1.86384 1.22880 1.23699 1.86669 1.19761 0.88914 0.84942 0.90251 1.67389 1.40820 0.98791 1.19672 1.22416 0.92926 0.93690 0.92493 1.21938 0.94906 0.99641 1.07346 1.21403 1.00712 0.90645 0.92467 1.20012 0.91457 0.96775 1.09332 1.19802 0.97821 0.90838 0.86281 1.45872 1.54932 1.27318 1.09108 1.21097 0.75831 0.78685 0.91793 1.90591 1.46843 1.59456 1.47285 1.18577 0.98002 0.92271 0.91437 0.91039 1.20537 0.92316 1.46328 0.95233 0.89899 1.24972 0.95039 0.94077 0.97894 1.69863 1.17394 1.47964 1.16671 0.87040 0.82565 0.79875 0.81341 1.19145 1.21211 1.18734 1.20072 0.92191 0.96699 0.93740 1.20847 0.98884 0.91946 0.97347 1.21033 0.95442 0.97926 1.00345 1.20853 0.97171 0.97950 1.00223 1.20873 0.99470 0.93743 1.00615 1.20968 0.95170 0.97866 1.01568 0.92712 0.92113 0.88404 0.82539 0.84588 0.84052 0.90702 0.91274 0.76047 0.92216 0.86497 0.87144 0.87364 0.87310 0.87463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.38 101.05 1.05 1.60 16 2 O -0.29 -4.79 9.73 -18.73 -0.18 -4.97 16 3 C 0.34 5.21 7.47 -17.12 -0.13 5.08 16 4 N -0.54 -7.53 9.22 -13.33 -0.12 -7.65 16 5 C 0.14 1.51 11.18 -17.56 -0.20 1.31 16 6 C -0.22 -2.10 10.11 -39.43 -0.40 -2.50 16 7 C -0.03 -0.29 9.81 -39.31 -0.39 -0.68 16 8 C -0.17 -2.43 5.28 -104.32 -0.55 -2.98 16 9 C 0.18 2.84 5.49 -5.20 -0.03 2.81 16 10 N -0.72 -13.62 5.45 -61.47 -0.33 -13.95 16 11 C 0.54 11.82 7.04 -10.99 -0.08 11.75 16 12 O -0.56 -13.43 15.37 5.55 0.09 -13.34 16 13 C 0.02 0.43 1.89 -94.08 -0.18 0.25 16 14 H 0.07 1.62 4.89 -51.93 -0.25 1.36 16 15 C -0.51 -13.16 8.07 -34.44 -0.28 -13.44 16 16 H 0.08 2.39 8.06 -52.49 -0.42 1.97 16 17 C 0.08 2.26 5.47 -17.82 -0.10 2.17 16 18 N -0.88 -25.14 13.96 55.43 0.77 -24.36 16 19 Si 0.86 20.16 27.18 -169.99 -4.62 15.54 16 20 H -0.27 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.26 -5.68 6.06 56.52 0.34 -5.34 16 23 C -0.03 -0.59 4.09 -104.63 -0.43 -1.02 16 24 C -0.07 -1.60 8.25 -39.58 -0.33 -1.93 16 25 C -0.13 -2.48 10.05 -39.58 -0.40 -2.88 16 26 C -0.14 -2.56 10.05 -39.58 -0.40 -2.96 16 27 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 28 C -0.14 -2.84 9.46 -39.58 -0.37 -3.22 16 29 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.06 0.82 8.10 -51.93 -0.42 0.39 16 31 H 0.10 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.16 1.17 8.06 -52.48 -0.42 0.74 16 33 H 0.14 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.14 1.25 8.06 -52.48 -0.42 0.83 16 35 H 0.07 1.31 7.87 -51.93 -0.41 0.90 16 36 H 0.07 1.03 8.03 -51.93 -0.42 0.61 16 37 H 0.40 7.65 8.35 -40.82 -0.34 7.31 16 38 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.12 2.69 7.93 -52.49 -0.42 2.27 16 40 H 0.11 1.81 8.06 -52.48 -0.42 1.39 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.11 2.05 7.95 -52.49 -0.42 1.64 16 LS Contribution 369.37 15.07 5.57 5.57 Total: -1.00 -31.87 369.37 -8.10 -39.97 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -5.67 Total: 12.59 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -3.59 Total: -9.39 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.32 Total: -45.97 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.10 Total: -18.31 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.62 Total: 15.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.87 -8.10 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411629178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.544 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds