Wall clock time and date at job start Tue Mar 31 2020 14:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35676 * 117.00410 * 2 1 4 4 N 1.32279 * 119.68072 * 359.97438 * 3 2 1 5 5 C 1.31933 * 121.64637 * 180.02562 * 4 3 2 6 6 C 1.38097 * 120.83290 * 359.97438 * 5 4 3 7 7 C 1.38781 * 119.28772 * 359.72153 * 6 5 4 8 8 C 1.38427 * 118.48453 * 0.54230 * 7 6 5 9 9 C 1.50696 * 120.44347 * 179.73357 * 8 7 6 10 10 N 1.46500 * 109.47258 * 259.72319 * 9 8 7 11 11 C 1.34777 * 120.00066 * 180.02562 * 10 9 8 12 12 O 1.21284 * 119.99987 * 359.97438 * 11 10 9 13 13 C 1.50691 * 120.00237 * 180.02562 * 11 10 9 14 14 H 1.09002 * 109.47502 * 59.99741 * 13 11 10 15 15 C 1.50703 * 109.47089 * 300.00071 * 13 11 10 16 16 H 1.08001 * 119.99695 * 325.09683 * 15 13 11 17 17 C 1.37878 * 120.00092 * 145.09568 * 15 13 11 18 18 N 1.31512 * 119.99890 * 184.98420 * 17 15 13 19 19 Si 1.86800 * 120.00076 * 4.98609 * 17 15 13 20 20 H 1.48501 * 109.47174 * 84.66495 * 19 17 15 21 21 H 1.48498 * 109.46748 * 204.66821 * 19 17 15 22 22 H 1.48498 * 109.46658 * 324.66664 * 19 17 15 23 23 C 1.50696 * 109.47429 * 179.97438 * 13 11 10 24 24 C 1.38237 * 119.99972 * 65.02257 * 23 13 11 25 25 C 1.38235 * 119.99921 * 179.81077 * 24 23 13 26 26 C 1.38236 * 120.00103 * 0.39634 * 25 24 23 27 27 C 1.38236 * 119.99862 * 359.85500 * 26 25 24 28 28 C 1.38232 * 120.00157 * 245.29493 * 23 13 11 29 29 H 1.09002 * 109.46356 * 299.99811 * 1 2 3 30 30 H 1.08998 * 109.46849 * 59.98856 * 1 2 3 31 31 H 1.08991 * 109.47464 * 179.97438 * 1 2 3 32 32 H 1.08005 * 119.58496 * 179.97438 * 5 4 3 33 33 H 1.08003 * 120.35416 * 180.02562 * 6 5 4 34 34 H 1.08004 * 120.75837 * 180.29676 * 7 6 5 35 35 H 1.09002 * 109.46957 * 139.71853 * 9 8 7 36 36 H 1.09005 * 109.47140 * 19.72342 * 9 8 7 37 37 H 0.96992 * 120.00009 * 359.97438 * 10 9 8 38 38 H 0.97002 * 120.00277 * 180.02562 * 18 17 15 39 39 H 1.08000 * 120.00328 * 359.97438 * 24 23 13 40 40 H 1.08007 * 119.99552 * 180.22502 * 25 24 23 41 41 H 1.07995 * 119.99756 * 179.83432 * 26 25 24 42 42 H 1.07992 * 119.99997 * 179.97438 * 27 26 25 43 43 H 1.08000 * 119.99894 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 7 1.3185 2.3142 -0.0005 5 6 1.8769 3.5096 -0.0010 6 6 3.2508 3.6490 -0.0005 7 6 4.0484 2.5134 0.0064 8 6 3.4323 1.2738 0.0011 9 6 4.2558 0.0117 0.0023 10 7 4.3224 -0.5291 -1.3576 11 6 5.0104 -1.6627 -1.5990 12 8 5.5747 -2.2347 -0.6906 13 6 5.0794 -2.2187 -2.9979 14 1 5.5412 -1.4848 -3.6584 15 6 3.6871 -2.5272 -3.4852 16 1 2.9405 -2.8882 -2.7933 17 6 3.3664 -2.3484 -4.8141 18 7 2.1280 -2.5231 -5.2210 19 14 4.6909 -1.8582 -6.0368 20 1 5.4007 -3.0733 -6.5113 21 1 4.0658 -1.1668 -7.1929 22 1 5.6589 -0.9450 -5.3781 23 6 5.9028 -3.4809 -2.9967 24 6 5.4584 -4.5955 -2.3104 25 6 6.2118 -5.7544 -2.3126 26 6 7.4136 -5.7963 -2.9943 27 6 7.8606 -4.6800 -3.6763 28 6 7.1053 -3.5223 -3.6773 29 1 -0.3632 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2516 4.3902 -0.0019 33 1 3.6997 4.6313 -0.0006 34 1 5.1254 2.5948 0.0118 35 1 3.7948 -0.7223 0.6631 36 1 5.2630 0.2354 0.3541 37 1 3.8708 -0.0719 -2.0841 38 1 1.9024 -2.3977 -6.1560 39 1 4.5212 -4.5617 -1.7747 40 1 5.8627 -6.6264 -1.7793 41 1 8.0035 -6.7009 -2.9937 42 1 8.7997 -4.7126 -4.2085 43 1 7.4545 -2.6502 -4.2102 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001411629178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:13 Heat of formation + Delta-G solvation = -34.437086 kcal Electronic energy + Delta-G solvation = -27275.782083 eV Core-core repulsion = 23478.339964 eV Total energy + Delta-G solvation = -3797.442119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77639 -40.87422 -39.40380 -38.85322 -36.14863 -35.51681 -33.48768 -33.19764 -31.85919 -31.62017 -29.59678 -28.31345 -27.34715 -25.35077 -23.97743 -23.41562 -23.21597 -22.36905 -20.95395 -19.35035 -19.11816 -18.25450 -17.99841 -17.68025 -17.14650 -16.74235 -16.43037 -16.16854 -15.97279 -15.57912 -15.42367 -15.16012 -14.94994 -14.76284 -14.40180 -14.25203 -14.11519 -13.90535 -13.89076 -13.57194 -13.42476 -13.01248 -12.95458 -12.71666 -12.50087 -12.19033 -12.03005 -11.96770 -11.63248 -11.41337 -11.02260 -10.86305 -10.64926 -10.49897 -9.93832 -9.63856 -9.46779 -9.33809 -8.34614 -6.42157 0.04919 0.31522 0.65201 0.71742 1.30543 1.38362 1.42352 1.87563 2.16630 2.29139 2.46608 2.89007 2.97411 3.18024 3.28819 3.76234 3.83359 4.07336 4.10009 4.22463 4.23151 4.31325 4.36473 4.37344 4.39474 4.40292 4.52699 4.59173 4.66609 4.71601 4.79810 4.83061 4.91269 5.08812 5.20398 5.24036 5.32758 5.39780 5.52300 5.60058 5.70505 5.74847 5.95512 6.20831 6.25336 6.31374 6.59926 6.67366 6.85330 7.22060 7.44444 8.80101 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013166 B = 0.003970 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.180643 B = 7050.973666 C = 7687.024986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.324 6.324 3 C 0.313 3.687 4 N -0.561 5.561 5 C 0.135 3.865 6 C -0.201 4.201 7 C -0.022 4.022 8 C -0.192 4.192 9 C 0.182 3.818 10 N -0.711 5.711 11 C 0.533 3.467 12 O -0.586 6.586 13 C 0.022 3.978 14 H 0.080 0.920 15 C -0.497 4.497 16 H 0.034 0.966 17 C 0.035 3.965 18 N -0.931 5.931 19 Si 0.922 3.078 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.233 1.233 23 C -0.055 4.055 24 C -0.104 4.104 25 C -0.134 4.134 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.152 4.152 29 H 0.068 0.932 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.193 0.807 33 H 0.178 0.822 34 H 0.168 0.832 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.404 0.596 38 H 0.269 0.731 39 H 0.086 0.914 40 H 0.134 0.866 41 H 0.151 0.849 42 H 0.150 0.850 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 11.346 7.507 14.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.231 6.231 3 C 0.135 3.865 4 N -0.285 5.285 5 C -0.020 4.020 6 C -0.220 4.220 7 C -0.048 4.048 8 C -0.195 4.195 9 C 0.059 3.941 10 N -0.361 5.361 11 C 0.321 3.679 12 O -0.467 6.467 13 C 0.001 3.999 14 H 0.098 0.902 15 C -0.535 4.535 16 H 0.052 0.948 17 C -0.165 4.165 18 N -0.569 5.569 19 Si 0.746 3.254 20 H -0.191 1.191 21 H -0.209 1.209 22 H -0.156 1.156 23 C -0.056 4.056 24 C -0.122 4.122 25 C -0.152 4.152 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.170 4.170 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.121 0.879 32 H 0.209 0.791 33 H 0.196 0.804 34 H 0.186 0.814 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.238 0.762 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.151 0.849 41 H 0.168 0.832 42 H 0.167 0.833 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.795 10.591 8.021 14.124 hybrid contribution -0.143 0.171 -0.929 0.955 sum 4.652 10.762 7.092 13.702 Atomic orbital electron populations 1.22934 0.76252 1.03791 1.02250 1.86327 1.24123 1.25361 1.87313 1.19983 0.89515 0.85012 0.92012 1.67406 1.41368 0.99451 1.20311 1.23166 0.94364 0.93543 0.90958 1.22388 0.94239 1.00871 1.04519 1.21774 1.02250 0.89725 0.91006 1.19940 0.90856 0.96970 1.11709 1.19814 0.98879 0.91400 0.84054 1.45875 1.53473 1.26324 1.10462 1.20992 0.76211 0.79329 0.91321 1.90560 1.48196 1.60272 1.47657 1.18494 0.96215 0.93202 0.91990 0.90248 1.20427 0.93093 1.45408 0.94531 0.94790 1.25721 0.97029 0.94169 0.99631 1.70004 1.19656 1.50076 1.17155 0.86107 0.80329 0.80067 0.78911 1.19111 1.20930 1.15642 1.20079 0.93743 0.96179 0.95595 1.20812 0.98820 0.93829 0.98785 1.21351 0.95865 0.97479 1.00457 1.21347 0.96343 0.99429 0.98294 1.21369 1.00362 0.92665 0.99777 1.21243 0.94666 0.99660 1.01473 0.91303 0.92856 0.87898 0.79059 0.80427 0.81436 0.93118 0.89690 0.76151 0.92153 0.89578 0.84861 0.83162 0.83270 0.85973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.22 10.38 113.37 1.18 2.39 16 2 O -0.32 -11.55 9.73 -89.94 -0.87 -12.43 16 3 C 0.31 9.90 7.47 84.78 0.63 10.53 16 4 N -0.56 -15.38 9.22 -308.93 -2.85 -18.23 16 5 C 0.14 2.56 11.18 84.64 0.95 3.51 16 6 C -0.20 -3.12 10.11 22.37 0.23 -2.90 16 7 C -0.02 -0.43 9.81 22.44 0.22 -0.21 16 8 C -0.19 -5.42 5.28 -19.67 -0.10 -5.52 16 9 C 0.18 6.06 5.49 85.63 0.47 6.53 16 10 N -0.71 -28.05 5.45 -466.79 -2.54 -30.59 16 11 C 0.53 24.45 7.04 87.65 0.62 25.06 16 12 O -0.59 -29.09 15.37 -3.04 -0.05 -29.13 16 13 C 0.02 1.06 1.89 -13.04 -0.02 1.03 16 14 H 0.08 3.55 4.89 -2.39 -0.01 3.54 16 15 C -0.50 -27.28 8.07 25.60 0.21 -27.08 16 16 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 17 C 0.03 1.90 5.47 84.66 0.46 2.37 16 18 N -0.93 -55.39 13.96 21.45 0.30 -55.09 16 19 Si 0.92 41.39 27.18 68.60 1.86 43.25 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.23 -9.25 6.06 99.48 0.60 -8.65 16 23 C -0.05 -2.52 4.09 -19.87 -0.08 -2.60 16 24 C -0.10 -4.77 8.25 22.27 0.18 -4.59 16 25 C -0.13 -5.00 10.05 22.27 0.22 -4.78 16 26 C -0.14 -4.37 10.05 22.27 0.22 -4.15 16 27 C -0.12 -4.07 10.05 22.27 0.22 -3.85 16 28 C -0.15 -5.98 9.46 22.27 0.21 -5.77 16 29 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 30 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 31 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.19 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.18 1.33 8.06 -2.91 -0.02 1.30 16 34 H 0.17 2.38 8.06 -2.91 -0.02 2.36 16 35 H 0.05 1.92 7.87 -2.39 -0.02 1.90 16 36 H 0.08 2.53 8.03 -2.38 -0.02 2.51 16 37 H 0.40 15.94 8.35 -92.71 -0.77 15.17 16 38 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 39 H 0.09 4.33 7.93 -2.91 -0.02 4.31 16 40 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 41 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 42 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 43 H 0.12 4.32 7.95 -2.91 -0.02 4.29 16 Total: -1.00 -74.58 369.37 1.82 -72.76 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: 0.15 Total: 39.48 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: 5.81 Total: -10.01 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -5.09 Total: -103.92 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -0.92 Total: -41.56 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 1.86 Total: 43.25 kcal Total: -74.58 1.82 -72.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411629178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.321 kcal (2) G-P(sol) polarization free energy of solvation -74.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds