Wall clock time and date at job start Tue Mar 31 2020 14:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35679 * 116.99627 * 2 1 4 4 C 1.38928 * 119.68274 * 180.25414 * 3 2 1 5 5 C 1.38380 * 119.10931 * 180.31641 * 4 3 2 6 6 C 1.50693 * 120.75931 * 179.71031 * 5 4 3 7 7 C 1.52997 * 109.47293 * 269.72642 * 6 5 4 8 8 N 1.46504 * 109.47327 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00020 * 179.97438 * 8 7 6 10 10 O 1.21617 * 120.00035 * 0.02562 * 9 8 7 11 11 C 1.47433 * 120.00159 * 179.97438 * 9 8 7 12 12 C 1.39222 * 120.27950 * 355.67294 * 11 9 8 13 13 C 1.38228 * 120.09079 * 180.27937 * 12 11 9 14 14 C 1.38824 * 120.67423 * 359.71805 * 13 12 11 15 15 C 1.37597 * 120.57318 * 0.02562 * 14 13 12 16 16 C 1.40711 * 119.87929 * 359.97438 * 15 14 13 17 17 C 1.40891 * 120.32596 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99615 * 216.32947 * 17 16 15 19 19 C 1.40267 * 120.00197 * 36.33258 * 17 16 15 20 20 N 1.30625 * 120.00058 * 190.50733 * 19 17 16 21 21 Si 1.86802 * 120.00015 * 10.50211 * 19 17 16 22 22 H 1.48509 * 109.46965 * 267.22708 * 21 19 17 23 23 H 1.48499 * 109.47061 * 27.22336 * 21 19 17 24 24 H 1.48502 * 109.47123 * 147.22806 * 21 19 17 25 25 C 1.38825 * 118.48568 * 359.43763 * 5 4 3 26 26 C 1.38050 * 119.29126 * 0.27617 * 25 5 4 27 27 N 1.31965 * 120.83294 * 0.02562 * 26 25 5 28 28 H 1.08999 * 109.47311 * 300.00008 * 1 2 3 29 29 H 1.09005 * 109.47078 * 60.00735 * 1 2 3 30 30 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.44511 * 0.02833 * 4 3 2 32 32 H 1.08994 * 109.47477 * 149.72095 * 6 5 4 33 33 H 1.09004 * 109.47061 * 29.72336 * 6 5 4 34 34 H 1.08992 * 109.47736 * 59.99651 * 7 6 5 35 35 H 1.09004 * 109.47211 * 299.99474 * 7 6 5 36 36 H 0.97001 * 119.99703 * 359.97438 * 8 7 6 37 37 H 1.08001 * 119.95839 * 359.97438 * 12 11 9 38 38 H 1.08003 * 119.66408 * 179.73476 * 13 12 11 39 39 H 1.08000 * 119.71145 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.06329 * 180.02562 * 15 14 13 41 41 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.36242 * 180.29385 * 25 5 4 43 43 H 1.07994 * 119.58615 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 -0.0054 5 6 4.0484 2.5133 0.0014 6 6 5.5510 2.6272 0.0025 7 6 6.0586 2.6650 1.4453 8 7 7.5194 2.7763 1.4463 9 6 8.1905 2.8273 2.6140 10 8 7.5835 2.7804 3.6668 11 6 9.6606 2.9388 2.6151 12 6 10.3683 2.9014 1.4168 13 6 11.7471 3.0005 1.4228 14 6 12.4416 3.1437 2.6162 15 6 11.7695 3.1892 3.8160 16 6 10.3661 3.0905 3.8375 17 6 9.6683 3.1365 5.0606 18 1 8.7879 2.5274 5.2032 19 6 10.1171 3.9733 6.0931 20 7 9.6021 3.8687 7.2890 21 14 11.4512 5.2371 5.7578 22 1 12.7789 4.6505 6.0721 23 1 11.4107 5.6319 4.3269 24 1 11.2247 6.4333 6.6081 25 6 3.2504 3.6492 0.0013 26 6 1.8769 3.5097 0.0004 27 7 1.3185 2.3141 0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0228 0.3697 -0.0100 32 1 5.8464 3.5422 -0.5107 33 1 5.9809 1.7674 -0.5115 34 1 5.7633 1.7500 1.9585 35 1 5.6288 3.5248 1.9593 36 1 8.0036 2.8134 0.6066 37 1 9.8398 2.7899 0.4815 38 1 12.2895 2.9664 0.4894 39 1 13.5188 3.2201 2.6028 40 1 12.3181 3.3012 4.7395 41 1 9.9122 4.4476 8.0029 42 1 3.6990 4.6316 0.0017 43 1 1.2516 4.3902 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413387705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:43 Heat of formation + Delta-G solvation = -19.145281 kcal Electronic energy + Delta-G solvation = -25934.911566 eV Core-core repulsion = 22138.132549 eV Total energy + Delta-G solvation = -3796.779016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.84601 -39.11403 -38.24707 -37.09631 -35.34298 -33.77126 -33.06834 -30.97163 -30.50034 -30.41737 -28.84858 -27.36846 -25.46704 -24.07189 -23.54829 -22.23191 -21.54709 -20.88745 -19.56340 -18.02477 -17.59993 -17.32138 -16.65855 -16.20871 -16.12469 -15.48146 -15.26913 -15.16327 -14.48932 -14.33591 -14.17671 -14.11039 -13.63767 -13.58707 -13.18168 -12.88663 -12.66263 -12.48444 -12.33176 -12.06128 -12.03831 -11.92154 -11.55811 -11.40200 -11.18859 -10.95076 -10.71486 -10.45691 -10.19398 -9.87560 -9.82851 -9.78445 -9.26870 -8.72430 -8.50350 -8.45142 -7.83515 -7.60573 -6.91254 -4.49771 0.94784 1.04211 2.08912 2.58840 2.86310 3.07495 3.16359 3.27489 3.52703 3.81826 3.93854 4.00064 4.10865 4.55827 4.58929 4.73912 4.90421 4.92312 5.00819 5.03985 5.06879 5.18051 5.36562 5.37995 5.45075 5.55555 5.70379 5.75650 5.85973 5.88449 5.99494 6.13928 6.17008 6.24528 6.38735 6.49426 6.78036 7.01719 7.03940 7.08424 7.21602 7.37623 7.57269 7.63740 7.74130 8.00146 8.28343 8.46742 8.62571 8.85466 9.33803 10.05440 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002450 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.688003 B =11424.922861 C =12124.592585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.319 3.681 4 C -0.185 4.185 5 C 0.003 3.997 6 C -0.094 4.094 7 C 0.132 3.868 8 N -0.750 5.750 9 C 0.561 3.439 10 O -0.527 6.527 11 C -0.250 4.250 12 C -0.041 4.041 13 C -0.255 4.255 14 C -0.066 4.066 15 C -0.225 4.225 16 C 0.116 3.884 17 C -0.401 4.401 18 H 0.124 0.876 19 C 0.078 3.922 20 N -0.792 5.792 21 Si 0.907 3.093 22 H -0.268 1.268 23 H -0.242 1.242 24 H -0.289 1.289 25 C -0.204 4.204 26 C 0.139 3.861 27 N -0.545 5.545 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.142 0.858 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.392 0.608 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.104 0.896 41 H 0.287 0.713 42 H 0.139 0.861 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 -1.191 -15.420 19.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.205 4.205 5 C -0.005 4.005 6 C -0.132 4.132 7 C 0.008 3.992 8 N -0.405 5.405 9 C 0.354 3.646 10 O -0.404 6.404 11 C -0.254 4.254 12 C -0.060 4.060 13 C -0.274 4.274 14 C -0.084 4.084 15 C -0.244 4.244 16 C 0.111 3.889 17 C -0.428 4.428 18 H 0.142 0.858 19 C -0.142 4.142 20 N -0.416 5.416 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.165 1.165 24 H -0.216 1.216 25 C -0.224 4.224 26 C -0.016 4.016 27 N -0.270 5.270 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.113 0.887 31 H 0.160 0.840 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.226 0.774 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.122 0.878 41 H 0.098 0.902 42 H 0.157 0.843 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.439 -1.534 -14.326 19.035 hybrid contribution 1.427 0.802 -0.420 1.691 sum -11.012 -0.732 -14.747 18.419 Atomic orbital electron populations 1.22843 0.77293 1.02878 1.02399 1.86245 1.22872 1.24616 1.87850 1.19804 0.89298 0.84688 0.92125 1.20980 0.91976 0.99244 1.08338 1.19929 0.95930 0.92036 0.92623 1.20862 0.89930 1.04226 0.98179 1.21035 0.81621 1.02402 0.94163 1.45971 1.06019 1.79315 1.09220 1.18358 0.87873 0.75871 0.82502 1.90739 1.69990 1.49258 1.30420 1.19388 0.90706 1.21674 0.93673 1.20771 0.94185 0.95733 0.95325 1.20286 0.93817 1.16752 0.96576 1.20741 0.97812 0.96877 0.92994 1.21152 0.94420 1.12165 0.96667 1.17559 0.90828 0.88317 0.92187 1.20206 1.10852 1.18774 0.92934 0.85836 1.26392 0.95975 0.98121 0.93739 1.69571 1.36986 1.33456 1.01549 0.86389 0.80199 0.79305 0.80808 1.19403 1.16541 1.21598 1.21945 0.94707 0.99623 1.06153 1.22368 0.92792 0.93575 0.92867 1.67293 1.41057 0.98885 1.19718 0.92274 0.92411 0.88686 0.83983 0.89515 0.89643 0.91787 0.91735 0.77389 0.88682 0.88537 0.88578 0.87787 0.90238 0.84290 0.82324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.38 101.05 1.05 1.39 16 2 O -0.31 -3.57 10.48 -18.74 -0.20 -3.77 16 3 C 0.32 3.88 7.49 -17.12 -0.13 3.76 16 4 C -0.18 -2.09 9.75 -39.27 -0.38 -2.47 16 5 C 0.00 0.03 5.17 -104.36 -0.54 -0.51 16 6 C -0.09 -0.92 5.51 -27.89 -0.15 -1.08 16 7 C 0.13 1.87 5.66 -4.04 -0.02 1.85 16 8 N -0.75 -12.27 5.51 -61.38 -0.34 -12.61 16 9 C 0.56 12.52 7.72 -12.52 -0.10 12.42 16 10 O -0.53 -13.95 13.54 5.26 0.07 -13.88 16 11 C -0.25 -5.76 5.92 -104.37 -0.62 -6.37 16 12 C -0.04 -0.80 9.52 -39.22 -0.37 -1.17 16 13 C -0.25 -4.90 10.03 -39.37 -0.39 -5.30 16 14 C -0.07 -1.35 10.01 -39.60 -0.40 -1.74 16 15 C -0.23 -5.28 7.00 -38.88 -0.27 -5.55 16 16 C 0.12 2.97 5.03 -106.54 -0.54 2.43 16 17 C -0.40 -11.23 8.31 -37.82 -0.31 -11.55 16 18 H 0.12 3.84 5.96 -52.48 -0.31 3.53 16 19 C 0.08 2.09 5.47 -17.30 -0.09 1.99 16 20 N -0.79 -21.57 13.92 55.56 0.77 -20.79 16 21 Si 0.91 20.66 24.52 -169.99 -4.17 16.49 16 22 H -0.27 -5.81 6.76 56.52 0.38 -5.42 16 23 H -0.24 -5.63 6.73 56.52 0.38 -5.25 16 24 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 25 C -0.20 -1.96 9.81 -39.43 -0.39 -2.35 16 26 C 0.14 1.36 11.18 -17.56 -0.20 1.16 16 27 N -0.55 -6.40 9.22 -13.33 -0.12 -6.53 16 28 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 29 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 30 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.09 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.39 5.22 6.52 -40.82 -0.27 4.95 16 37 H 0.10 1.46 6.42 -52.49 -0.34 1.12 16 38 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 39 H 0.10 1.69 8.06 -52.49 -0.42 1.26 16 40 H 0.10 2.41 5.01 -52.49 -0.26 2.15 16 41 H 0.29 7.00 8.29 -40.82 -0.34 6.66 16 42 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 43 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 LS Contribution 361.05 15.07 5.44 5.44 Total: -1.00 -32.41 361.05 -7.82 -40.23 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.42 Total: 8.51 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.86 Total: -13.09 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.31 Total: -39.93 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.13 Total: -17.65 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.17 Total: 16.49 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.41 -7.82 -40.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413387705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.081 kcal (2) G-P(sol) polarization free energy of solvation -32.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds