Wall clock time and date at job start Tue Mar 31 2020 14:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35679 * 116.99627 * 2 1 4 4 C 1.38928 * 119.68274 * 180.25414 * 3 2 1 5 5 C 1.38380 * 119.10931 * 180.31641 * 4 3 2 6 6 C 1.50693 * 120.75931 * 179.71031 * 5 4 3 7 7 C 1.52997 * 109.47293 * 269.72642 * 6 5 4 8 8 N 1.46504 * 109.47327 * 180.02562 * 7 6 5 9 9 C 1.34775 * 120.00020 * 179.97438 * 8 7 6 10 10 O 1.21617 * 120.00035 * 0.02562 * 9 8 7 11 11 C 1.47433 * 120.00159 * 179.97438 * 9 8 7 12 12 C 1.39222 * 120.27950 * 355.67294 * 11 9 8 13 13 C 1.38228 * 120.09079 * 180.27937 * 12 11 9 14 14 C 1.38824 * 120.67423 * 359.71805 * 13 12 11 15 15 C 1.37597 * 120.57318 * 0.02562 * 14 13 12 16 16 C 1.40711 * 119.87929 * 359.97438 * 15 14 13 17 17 C 1.40891 * 120.32596 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99615 * 216.32947 * 17 16 15 19 19 C 1.40267 * 120.00197 * 36.33258 * 17 16 15 20 20 N 1.30625 * 120.00058 * 190.50733 * 19 17 16 21 21 Si 1.86802 * 120.00015 * 10.50211 * 19 17 16 22 22 H 1.48509 * 109.46965 * 267.22708 * 21 19 17 23 23 H 1.48499 * 109.47061 * 27.22336 * 21 19 17 24 24 H 1.48502 * 109.47123 * 147.22806 * 21 19 17 25 25 C 1.38825 * 118.48568 * 359.43763 * 5 4 3 26 26 C 1.38050 * 119.29126 * 0.27617 * 25 5 4 27 27 N 1.31965 * 120.83294 * 0.02562 * 26 25 5 28 28 H 1.08999 * 109.47311 * 300.00008 * 1 2 3 29 29 H 1.09005 * 109.47078 * 60.00735 * 1 2 3 30 30 H 1.09002 * 109.46889 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.44511 * 0.02833 * 4 3 2 32 32 H 1.08994 * 109.47477 * 149.72095 * 6 5 4 33 33 H 1.09004 * 109.47061 * 29.72336 * 6 5 4 34 34 H 1.08992 * 109.47736 * 59.99651 * 7 6 5 35 35 H 1.09004 * 109.47211 * 299.99474 * 7 6 5 36 36 H 0.97001 * 119.99703 * 359.97438 * 8 7 6 37 37 H 1.08001 * 119.95839 * 359.97438 * 12 11 9 38 38 H 1.08003 * 119.66408 * 179.73476 * 13 12 11 39 39 H 1.08000 * 119.71145 * 180.02562 * 14 13 12 40 40 H 1.07996 * 120.06329 * 180.02562 * 15 14 13 41 41 H 0.97003 * 120.00012 * 180.02562 * 20 19 17 42 42 H 1.07999 * 120.36242 * 180.29385 * 25 5 4 43 43 H 1.07994 * 119.58615 * 179.97438 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2741 -0.0054 5 6 4.0484 2.5133 0.0014 6 6 5.5510 2.6272 0.0025 7 6 6.0586 2.6650 1.4453 8 7 7.5194 2.7763 1.4463 9 6 8.1905 2.8273 2.6140 10 8 7.5835 2.7804 3.6668 11 6 9.6606 2.9388 2.6151 12 6 10.3683 2.9014 1.4168 13 6 11.7471 3.0005 1.4228 14 6 12.4416 3.1437 2.6162 15 6 11.7695 3.1892 3.8160 16 6 10.3661 3.0905 3.8375 17 6 9.6683 3.1365 5.0606 18 1 8.7879 2.5274 5.2032 19 6 10.1171 3.9733 6.0931 20 7 9.6021 3.8687 7.2890 21 14 11.4512 5.2371 5.7578 22 1 12.7789 4.6505 6.0721 23 1 11.4107 5.6319 4.3269 24 1 11.2247 6.4333 6.6081 25 6 3.2504 3.6492 0.0013 26 6 1.8769 3.5097 0.0004 27 7 1.3185 2.3141 0.0001 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0228 0.3697 -0.0100 32 1 5.8464 3.5422 -0.5107 33 1 5.9809 1.7674 -0.5115 34 1 5.7633 1.7500 1.9585 35 1 5.6288 3.5248 1.9593 36 1 8.0036 2.8134 0.6066 37 1 9.8398 2.7899 0.4815 38 1 12.2895 2.9664 0.4894 39 1 13.5188 3.2201 2.6028 40 1 12.3181 3.3012 4.7395 41 1 9.9122 4.4476 8.0029 42 1 3.6990 4.6316 0.0017 43 1 1.2516 4.3902 0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413387705.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:42 Heat of formation + Delta-G solvation = -42.898827 kcal Electronic energy + Delta-G solvation = -25935.941597 eV Core-core repulsion = 22138.132549 eV Total energy + Delta-G solvation = -3797.809047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.65422 -40.79229 -39.12457 -38.71859 -36.62055 -35.53927 -34.37548 -32.27971 -32.03737 -31.68752 -30.00618 -28.12103 -27.21443 -25.27278 -24.39713 -23.80808 -22.74461 -22.32536 -21.16012 -19.45296 -18.91954 -18.25625 -18.09203 -17.18053 -17.03469 -16.90075 -16.78392 -16.30809 -15.80844 -15.77702 -15.48860 -15.34278 -15.12739 -14.60568 -14.50040 -14.39916 -14.14141 -13.77881 -13.67548 -13.25926 -13.15508 -13.06553 -12.70277 -12.67306 -12.49445 -12.20468 -12.17431 -12.14857 -12.01782 -11.60189 -11.07519 -10.70585 -10.65864 -10.30558 -10.00527 -9.51858 -9.49093 -9.39575 -8.81372 -6.47621 0.14513 0.22133 0.36123 0.85749 1.24086 1.37661 1.46863 2.10005 2.11096 2.27588 2.41696 2.72747 2.76879 3.35462 3.55410 3.73760 3.93082 3.99939 4.14049 4.15003 4.27566 4.30425 4.36999 4.40834 4.42969 4.46814 4.56704 4.70807 4.73951 4.76944 4.85034 4.88895 4.93558 5.01988 5.08177 5.31355 5.37347 5.47026 5.49302 5.61269 5.70851 5.89226 5.98404 6.22841 6.29355 6.49224 6.69142 6.80583 6.83411 6.94138 7.66162 8.23074 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.002450 C = 0.002309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.688003 B =11424.922861 C =12124.592585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.325 6.325 3 C 0.298 3.702 4 C -0.198 4.198 5 C -0.005 4.005 6 C -0.077 4.077 7 C 0.133 3.867 8 N -0.723 5.723 9 C 0.553 3.447 10 O -0.580 6.580 11 C -0.265 4.265 12 C -0.038 4.038 13 C -0.230 4.230 14 C -0.063 4.063 15 C -0.247 4.247 16 C 0.098 3.902 17 C -0.451 4.451 18 H 0.071 0.929 19 C 0.034 3.966 20 N -0.852 5.852 21 Si 0.968 3.032 22 H -0.249 1.249 23 H -0.247 1.247 24 H -0.281 1.281 25 C -0.203 4.203 26 C 0.132 3.868 27 N -0.560 5.560 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.120 0.880 31 H 0.147 0.853 32 H 0.112 0.888 33 H 0.104 0.896 34 H 0.044 0.956 35 H 0.049 0.951 36 H 0.412 0.588 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.100 0.900 41 H 0.293 0.707 42 H 0.162 0.838 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.050 -0.176 -20.078 22.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.233 6.233 3 C 0.120 3.880 4 C -0.218 4.218 5 C -0.013 4.013 6 C -0.114 4.114 7 C 0.009 3.991 8 N -0.379 5.379 9 C 0.345 3.655 10 O -0.462 6.462 11 C -0.270 4.270 12 C -0.056 4.056 13 C -0.248 4.248 14 C -0.081 4.081 15 C -0.266 4.266 16 C 0.094 3.906 17 C -0.480 4.480 18 H 0.089 0.911 19 C -0.180 4.180 20 N -0.478 5.478 21 Si 0.791 3.209 22 H -0.173 1.173 23 H -0.171 1.171 24 H -0.208 1.208 25 C -0.223 4.223 26 C -0.023 4.023 27 N -0.285 5.285 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.138 0.862 31 H 0.165 0.835 32 H 0.131 0.869 33 H 0.122 0.878 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.250 0.750 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.153 0.847 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.180 0.820 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -10.393 -0.537 -19.056 21.713 hybrid contribution 0.753 0.377 0.656 1.067 sum -9.640 -0.161 -18.400 20.773 Atomic orbital electron populations 1.23027 0.75923 1.04521 1.02176 1.86217 1.24365 1.24732 1.87947 1.20061 0.89858 0.85054 0.93015 1.21168 0.91980 0.99995 1.08678 1.20054 0.96339 0.92059 0.92849 1.20753 0.89330 1.06446 0.94913 1.21099 0.80019 1.00780 0.97251 1.45661 1.07006 1.76956 1.08235 1.18561 0.88201 0.75466 0.83241 1.90746 1.70925 1.51608 1.32875 1.19801 0.91499 1.21102 0.94584 1.21265 0.94832 0.93895 0.95635 1.20970 0.93812 1.12054 0.97996 1.21261 1.00011 0.94650 0.92162 1.21240 0.93455 1.13677 0.98250 1.17845 0.92221 0.88344 0.92232 1.19946 1.10775 1.21561 0.95687 0.91142 1.27140 0.98102 0.99512 0.93224 1.69634 1.39881 1.35735 1.02589 0.85468 0.78300 0.77067 0.80098 1.17349 1.17062 1.20793 1.22260 0.94700 1.00388 1.04925 1.22925 0.93562 0.93838 0.91997 1.67327 1.41576 0.99440 1.20113 0.92857 0.92207 0.86170 0.83536 0.86927 0.87769 0.93798 0.93250 0.75034 0.83681 0.83637 0.84663 0.88221 0.89702 0.82024 0.79520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.80 16 2 O -0.33 -7.57 10.48 -89.96 -0.94 -8.52 16 3 C 0.30 7.23 7.49 84.80 0.63 7.87 16 4 C -0.20 -4.36 9.75 22.47 0.22 -4.14 16 5 C 0.00 -0.09 5.17 -19.69 -0.10 -0.19 16 6 C -0.08 -1.29 5.51 29.84 0.16 -1.12 16 7 C 0.13 3.64 5.66 86.38 0.49 4.13 16 8 N -0.72 -22.39 5.51 -466.36 -2.57 -24.96 16 9 C 0.55 25.00 7.72 86.67 0.67 25.67 16 10 O -0.58 -32.92 13.54 -4.08 -0.06 -32.98 16 11 C -0.27 -11.97 5.92 -19.70 -0.12 -12.09 16 12 C -0.04 -1.28 9.52 22.50 0.21 -1.06 16 13 C -0.23 -7.30 10.03 22.41 0.22 -7.08 16 14 C -0.06 -2.26 10.01 22.26 0.22 -2.04 16 15 C -0.25 -11.24 7.00 22.72 0.16 -11.08 16 16 C 0.10 5.09 5.03 -21.11 -0.11 4.98 16 17 C -0.45 -27.22 8.31 23.41 0.19 -27.03 16 18 H 0.07 4.89 5.96 -2.91 -0.02 4.87 16 19 C 0.03 1.92 5.47 85.37 0.47 2.39 16 20 N -0.85 -50.23 13.92 21.88 0.30 -49.93 16 21 Si 0.97 43.81 24.52 68.60 1.68 45.49 16 22 H -0.25 -10.29 6.76 99.48 0.67 -9.61 16 23 H -0.25 -11.14 6.73 99.48 0.67 -10.47 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 25 C -0.20 -3.48 9.81 22.37 0.22 -3.26 16 26 C 0.13 2.38 11.18 84.63 0.95 3.32 16 27 N -0.56 -12.85 9.22 -308.94 -2.85 -15.70 16 28 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 29 H 0.06 0.93 8.10 -2.38 -0.02 0.91 16 30 H 0.12 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 32 H 0.11 1.36 8.10 -2.39 -0.02 1.34 16 33 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.41 9.20 6.52 -92.71 -0.60 8.59 16 37 H 0.15 3.41 6.42 -2.91 -0.02 3.39 16 38 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 39 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 40 H 0.10 4.55 5.01 -2.91 -0.01 4.53 16 41 H 0.29 15.40 8.29 -92.71 -0.77 14.63 16 42 H 0.16 1.97 8.06 -2.91 -0.02 1.95 16 43 H 0.19 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -79.76 361.05 1.62 -78.14 By element: Atomic # 1 Polarization: 27.00 SS G_CDS: 0.37 Total: 27.37 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: 5.68 Total: -18.93 kcal Atomic # 7 Polarization: -85.47 SS G_CDS: -5.11 Total: -90.58 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -1.00 Total: -41.49 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.68 Total: 45.49 kcal Total: -79.76 1.62 -78.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413387705.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.242 kcal (2) G-P(sol) polarization free energy of solvation -79.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds