Wall clock time and date at job start Tue Mar 31 2020 14:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99846 * 2 1 4 4 C 1.53004 * 109.46915 * 269.99857 * 3 2 1 5 5 H 1.08995 * 109.47128 * 304.99952 * 4 3 2 6 6 O 1.42896 * 109.47121 * 65.00303 * 4 3 2 7 7 C 1.50703 * 109.47284 * 185.00092 * 4 3 2 8 8 C 1.38665 * 120.41751 * 99.99558 * 7 4 3 9 9 C 1.38634 * 118.42170 * 180.02562 * 8 7 4 10 10 C 1.38232 * 119.15804 * 359.97438 * 9 8 7 11 11 N 1.31852 * 120.76342 * 0.02562 * 10 9 8 12 12 C 1.31886 * 121.72600 * 359.69551 * 11 10 9 13 13 C 1.34776 * 120.00117 * 179.97438 * 2 1 3 14 14 O 1.21542 * 120.00143 * 175.04013 * 13 2 1 15 15 C 1.47892 * 119.99860 * 355.04277 * 13 2 1 16 16 C 1.39912 * 120.02542 * 42.72668 * 15 13 2 17 17 C 1.38333 * 120.35587 * 179.78499 * 16 15 13 18 18 C 1.37747 * 120.41157 * 0.47545 * 17 16 15 19 19 C 1.40752 * 120.04071 * 359.78649 * 18 17 16 20 20 C 1.41436 * 120.17645 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00231 * 332.43884 * 20 19 18 22 22 C 1.39938 * 119.99499 * 152.43506 * 20 19 18 23 23 N 1.30824 * 120.00572 * 348.60991 * 22 20 19 24 24 Si 1.86806 * 119.99530 * 168.61070 * 22 20 19 25 25 H 1.48499 * 109.47153 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46949 * 120.00305 * 24 22 20 27 27 H 1.48498 * 109.46799 * 239.99716 * 24 22 20 28 28 C 1.38993 * 120.02111 * 223.00864 * 15 13 2 29 29 H 1.08999 * 109.47391 * 96.07091 * 1 2 3 30 30 H 1.09001 * 109.46794 * 216.07018 * 1 2 3 31 31 H 1.09000 * 109.47522 * 336.06605 * 1 2 3 32 32 H 1.08996 * 109.47522 * 29.99626 * 3 2 1 33 33 H 1.09004 * 109.46957 * 149.99935 * 3 2 1 34 34 H 0.96699 * 114.00665 * 59.99799 * 6 4 3 35 35 H 1.08004 * 120.79409 * 359.97438 * 8 7 4 36 36 H 1.08001 * 120.42234 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.61634 * 179.97438 * 10 9 8 38 38 H 1.08008 * 119.61998 * 180.31162 * 12 11 10 39 39 H 1.08001 * 119.82461 * 0.02562 * 16 15 13 40 40 H 1.08002 * 119.79032 * 180.23885 * 17 16 15 41 41 H 1.07997 * 119.97834 * 179.76099 * 18 17 16 42 42 H 0.96998 * 120.00730 * 180.02562 * 23 22 20 43 43 H 1.08003 * 120.20281 * 359.94977 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 2.9642 0.9131 -1.9815 6 8 1.2060 1.9935 -2.0814 7 6 3.3107 2.9492 -1.4444 8 6 4.6730 2.8591 -1.6870 9 6 5.4232 4.0249 -1.6784 10 6 4.7926 5.2298 -1.4307 11 7 3.4946 5.2776 -1.2041 12 6 2.7490 4.1897 -1.2099 13 6 2.1389 -1.1672 0.0005 14 8 3.3509 -1.1692 -0.0905 15 6 1.4036 -2.4455 0.1118 16 6 0.2248 -2.6408 -0.6161 17 6 -0.4661 -3.8354 -0.5206 18 6 -0.0072 -4.8427 0.2993 19 6 1.1739 -4.6625 1.0434 20 6 1.6474 -5.6946 1.8866 21 1 0.9535 -6.4015 2.3168 22 6 3.0152 -5.7998 2.1632 23 7 3.8775 -5.0948 1.4770 24 14 3.6096 -6.9470 3.5123 25 1 2.4443 -7.6262 4.1336 26 1 4.5225 -7.9637 2.9309 27 1 4.3346 -6.1634 4.5445 28 6 1.8800 -3.4516 0.9441 29 1 -0.3634 -0.1087 -1.0219 30 1 -0.3633 -0.8307 0.6051 31 1 -0.3634 0.9393 0.4169 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 0.6954 2.6949 -1.6543 35 1 5.1387 1.9034 -1.8772 36 1 6.4867 3.9922 -1.8638 37 1 5.3699 6.1424 -1.4219 38 1 1.6878 4.2688 -1.0249 39 1 -0.1457 -1.8560 -1.2590 40 1 -1.3730 -3.9777 -1.0896 41 1 -0.5541 -5.7711 0.3715 42 1 4.8256 -5.1680 1.6685 43 1 2.7875 -3.3038 1.5107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413772414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:13 Heat of formation + Delta-G solvation = -22.071115 kcal Electronic energy + Delta-G solvation = -26800.071930 eV Core-core repulsion = 23003.166040 eV Total energy + Delta-G solvation = -3796.905890 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.66645 -39.55238 -37.62881 -36.86030 -34.86211 -33.68091 -33.02659 -31.80038 -30.49550 -29.48017 -28.62853 -26.27907 -25.35071 -24.57321 -23.81780 -22.15055 -21.41043 -20.95438 -18.99657 -17.87460 -17.48819 -16.78742 -16.69816 -16.02351 -15.78084 -15.66642 -15.13969 -14.84246 -14.57825 -14.39986 -14.11207 -13.78381 -13.50151 -13.28355 -13.12778 -12.76502 -12.51744 -12.47821 -12.34762 -12.10543 -11.77352 -11.71218 -11.59434 -11.15457 -10.99459 -10.75784 -10.61928 -10.42246 -10.12163 -10.05293 -9.71019 -9.68507 -9.32702 -9.27291 -8.98923 -8.28536 -7.61421 -7.46853 -6.73970 -4.43619 0.79455 1.02036 2.30748 2.79538 3.06896 3.11616 3.12832 3.31034 3.50788 3.63233 3.91775 4.10359 4.22284 4.48024 4.58471 4.61303 4.69149 4.79699 4.88481 4.99917 5.23747 5.36564 5.39401 5.45333 5.54990 5.66951 5.75184 5.82065 5.87583 6.07364 6.10184 6.15775 6.36615 6.39171 6.68231 6.80547 6.98360 7.03966 7.21770 7.38074 7.39459 7.63464 7.67194 7.76035 7.84840 7.97390 8.16160 8.50139 8.77243 8.82028 8.84124 10.18943 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002887 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.147581 B = 9695.165865 C =10908.281643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.614 5.614 3 C 0.095 3.905 4 C 0.136 3.864 5 H 0.115 0.885 6 O -0.545 6.545 7 C -0.162 4.162 8 C -0.060 4.060 9 C -0.169 4.169 10 C 0.094 3.906 11 N -0.484 5.484 12 C 0.105 3.895 13 C 0.568 3.432 14 O -0.541 6.541 15 C -0.123 4.123 16 C -0.215 4.215 17 C -0.101 4.101 18 C -0.208 4.208 19 C 0.100 3.900 20 C -0.461 4.461 21 H 0.080 0.920 22 C 0.070 3.930 23 N -0.791 5.791 24 Si 0.911 3.089 25 H -0.261 1.261 26 H -0.274 1.274 27 H -0.272 1.272 28 C -0.098 4.098 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.368 0.632 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.152 0.848 39 H 0.100 0.900 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.282 0.718 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.393 16.110 -3.042 16.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.348 5.348 3 C -0.029 4.029 4 C 0.075 3.925 5 H 0.133 0.867 6 O -0.349 6.349 7 C -0.165 4.165 8 C -0.086 4.086 9 C -0.189 4.189 10 C -0.063 4.063 11 N -0.192 5.192 12 C -0.052 4.052 13 C 0.360 3.640 14 O -0.418 6.418 15 C -0.126 4.126 16 C -0.235 4.235 17 C -0.119 4.119 18 C -0.228 4.228 19 C 0.097 3.903 20 C -0.491 4.491 21 H 0.098 0.902 22 C -0.148 4.148 23 N -0.416 5.416 24 Si 0.736 3.264 25 H -0.184 1.184 26 H -0.199 1.199 27 H -0.197 1.197 28 C -0.118 4.118 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.109 0.891 34 H 0.215 0.785 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.173 0.827 38 H 0.169 0.831 39 H 0.118 0.882 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.678 16.468 -3.334 16.816 hybrid contribution 0.680 -0.871 0.650 1.282 sum 0.002 15.597 -2.683 15.826 Atomic orbital electron populations 1.22015 0.79130 1.02402 1.02113 1.47669 1.07165 1.04811 1.75138 1.22027 0.99011 0.86327 0.95571 1.21302 0.83523 0.92860 0.94787 0.86693 1.86712 1.31845 1.59646 1.56747 1.21573 0.95952 0.97358 1.01619 1.21591 0.93137 0.99484 0.94401 1.22189 1.01579 0.93499 1.01623 1.22791 0.90761 0.97761 0.94992 1.67679 1.06995 1.31782 1.12733 1.22437 0.99873 0.87392 0.95544 1.19043 0.86956 0.83848 0.74201 1.90702 1.14277 1.87378 1.49457 1.19396 0.96771 0.93259 1.03200 1.20617 0.97394 0.98886 1.06601 1.20463 0.98466 0.93947 0.99071 1.21144 1.01245 0.98466 1.01942 1.17581 0.90653 0.91667 0.90358 1.19600 0.92437 1.11608 1.25450 0.90200 1.25955 0.96957 0.95965 0.95879 1.69787 1.03643 1.34424 1.33730 0.86211 0.79363 0.80075 0.80786 1.18441 1.19929 1.19741 1.21551 1.00379 0.90890 0.99002 0.92251 0.89821 0.92464 0.90430 0.89124 0.78453 0.84260 0.84525 0.82719 0.83108 0.88197 0.88860 0.88650 0.90655 0.85254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.14 8.58 59.85 0.51 1.65 16 2 N -0.61 -9.87 2.84 -182.68 -0.52 -10.39 16 3 C 0.09 1.23 5.05 -4.04 -0.02 1.21 16 4 C 0.14 1.65 3.47 -27.88 -0.10 1.56 16 5 H 0.12 1.72 8.03 -51.93 -0.42 1.30 16 6 O -0.54 -6.12 12.75 -35.23 -0.45 -6.57 16 7 C -0.16 -1.76 4.98 -104.48 -0.52 -2.28 16 8 C -0.06 -0.64 9.82 -39.28 -0.39 -1.02 16 9 C -0.17 -1.52 10.11 -39.44 -0.40 -1.92 16 10 C 0.09 0.87 11.18 -17.55 -0.20 0.68 16 11 N -0.48 -5.34 10.36 -13.25 -0.14 -5.48 16 12 C 0.10 1.05 10.49 -17.55 -0.18 0.87 16 13 C 0.57 12.12 7.30 -12.31 -0.09 12.03 16 14 O -0.54 -13.12 16.59 5.33 0.09 -13.03 16 15 C -0.12 -2.85 5.11 -105.04 -0.54 -3.39 16 16 C -0.22 -4.47 7.65 -38.92 -0.30 -4.77 16 17 C -0.10 -2.13 10.01 -39.73 -0.40 -2.52 16 18 C -0.21 -4.88 9.78 -38.81 -0.38 -5.26 16 19 C 0.10 2.60 5.56 -106.87 -0.59 2.01 16 20 C -0.46 -12.01 9.07 -37.73 -0.34 -12.35 16 21 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 22 C 0.07 1.77 5.25 -17.34 -0.09 1.67 16 23 N -0.79 -20.96 10.79 55.55 0.60 -20.36 16 24 Si 0.91 18.69 29.57 -169.99 -5.03 13.66 16 25 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 26 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 28 C -0.10 -2.56 8.28 -38.44 -0.32 -2.88 16 29 H 0.06 0.77 6.83 -51.93 -0.35 0.41 16 30 H 0.08 1.25 6.08 -51.93 -0.32 0.93 16 31 H 0.06 0.56 7.83 -51.93 -0.41 0.15 16 32 H 0.08 0.76 7.85 -51.93 -0.41 0.35 16 33 H 0.09 1.33 7.49 -51.93 -0.39 0.94 16 34 H 0.37 2.59 7.52 45.56 0.34 2.94 16 35 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 36 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.16 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.15 1.09 6.79 -52.48 -0.36 0.74 16 39 H 0.10 1.81 5.59 -52.49 -0.29 1.52 16 40 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 41 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.28 6.88 8.30 -40.82 -0.34 6.55 16 43 H 0.13 3.65 6.15 -52.48 -0.32 3.33 16 LS Contribution 362.55 15.07 5.46 5.46 Total: -1.00 -31.95 362.55 -8.90 -40.85 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -4.58 Total: 10.57 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -4.34 Total: -14.72 kcal Atomic # 7 Polarization: -36.17 SS G_CDS: -0.06 Total: -36.22 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.36 Total: -19.60 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.95 -8.90 -40.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413772414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.777 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds