Wall clock time and date at job start Tue Mar 31 2020 14:17:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46499 * 119.99846 * 2 1 4 4 C 1.53004 * 109.46915 * 269.99857 * 3 2 1 5 5 H 1.08995 * 109.47128 * 304.99952 * 4 3 2 6 6 O 1.42896 * 109.47121 * 65.00303 * 4 3 2 7 7 C 1.50703 * 109.47284 * 185.00092 * 4 3 2 8 8 C 1.38665 * 120.41751 * 99.99558 * 7 4 3 9 9 C 1.38634 * 118.42170 * 180.02562 * 8 7 4 10 10 C 1.38232 * 119.15804 * 359.97438 * 9 8 7 11 11 N 1.31852 * 120.76342 * 0.02562 * 10 9 8 12 12 C 1.31886 * 121.72600 * 359.69551 * 11 10 9 13 13 C 1.34776 * 120.00117 * 179.97438 * 2 1 3 14 14 O 1.21542 * 120.00143 * 175.04013 * 13 2 1 15 15 C 1.47892 * 119.99860 * 355.04277 * 13 2 1 16 16 C 1.39912 * 120.02542 * 42.72668 * 15 13 2 17 17 C 1.38333 * 120.35587 * 179.78499 * 16 15 13 18 18 C 1.37747 * 120.41157 * 0.47545 * 17 16 15 19 19 C 1.40752 * 120.04071 * 359.78649 * 18 17 16 20 20 C 1.41436 * 120.17645 * 179.97438 * 19 18 17 21 21 H 1.07999 * 120.00231 * 332.43884 * 20 19 18 22 22 C 1.39938 * 119.99499 * 152.43506 * 20 19 18 23 23 N 1.30824 * 120.00572 * 348.60991 * 22 20 19 24 24 Si 1.86806 * 119.99530 * 168.61070 * 22 20 19 25 25 H 1.48499 * 109.47153 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46949 * 120.00305 * 24 22 20 27 27 H 1.48498 * 109.46799 * 239.99716 * 24 22 20 28 28 C 1.38993 * 120.02111 * 223.00864 * 15 13 2 29 29 H 1.08999 * 109.47391 * 96.07091 * 1 2 3 30 30 H 1.09001 * 109.46794 * 216.07018 * 1 2 3 31 31 H 1.09000 * 109.47522 * 336.06605 * 1 2 3 32 32 H 1.08996 * 109.47522 * 29.99626 * 3 2 1 33 33 H 1.09004 * 109.46957 * 149.99935 * 3 2 1 34 34 H 0.96699 * 114.00665 * 59.99799 * 6 4 3 35 35 H 1.08004 * 120.79409 * 359.97438 * 8 7 4 36 36 H 1.08001 * 120.42234 * 180.02562 * 9 8 7 37 37 H 1.07996 * 119.61634 * 179.97438 * 10 9 8 38 38 H 1.08008 * 119.61998 * 180.31162 * 12 11 10 39 39 H 1.08001 * 119.82461 * 0.02562 * 16 15 13 40 40 H 1.08002 * 119.79032 * 180.23885 * 17 16 15 41 41 H 1.07997 * 119.97834 * 179.76099 * 18 17 16 42 42 H 0.96998 * 120.00730 * 180.02562 * 23 22 20 43 43 H 1.08003 * 120.20281 * 359.94977 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4426 5 1 2.9642 0.9131 -1.9815 6 8 1.2060 1.9935 -2.0814 7 6 3.3107 2.9492 -1.4444 8 6 4.6730 2.8591 -1.6870 9 6 5.4232 4.0249 -1.6784 10 6 4.7926 5.2298 -1.4307 11 7 3.4946 5.2776 -1.2041 12 6 2.7490 4.1897 -1.2099 13 6 2.1389 -1.1672 0.0005 14 8 3.3509 -1.1692 -0.0905 15 6 1.4036 -2.4455 0.1118 16 6 0.2248 -2.6408 -0.6161 17 6 -0.4661 -3.8354 -0.5206 18 6 -0.0072 -4.8427 0.2993 19 6 1.1739 -4.6625 1.0434 20 6 1.6474 -5.6946 1.8866 21 1 0.9535 -6.4015 2.3168 22 6 3.0152 -5.7998 2.1632 23 7 3.8775 -5.0948 1.4770 24 14 3.6096 -6.9470 3.5123 25 1 2.4443 -7.6262 4.1336 26 1 4.5225 -7.9637 2.9309 27 1 4.3346 -6.1634 4.5445 28 6 1.8800 -3.4516 0.9441 29 1 -0.3634 -0.1087 -1.0219 30 1 -0.3633 -0.8307 0.6051 31 1 -0.3634 0.9393 0.4169 32 1 1.6084 2.0284 0.5137 33 1 3.1499 1.1384 0.5139 34 1 0.6954 2.6949 -1.6543 35 1 5.1387 1.9034 -1.8772 36 1 6.4867 3.9922 -1.8638 37 1 5.3699 6.1424 -1.4219 38 1 1.6878 4.2688 -1.0249 39 1 -0.1457 -1.8560 -1.2590 40 1 -1.3730 -3.9777 -1.0896 41 1 -0.5541 -5.7711 0.3715 42 1 4.8256 -5.1680 1.6685 43 1 2.7875 -3.3038 1.5107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413772414.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:13 Heat of formation + Delta-G solvation = -43.356813 kcal Electronic energy + Delta-G solvation = -26800.994947 eV Core-core repulsion = 23003.166040 eV Total energy + Delta-G solvation = -3797.828907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.57866 -40.94926 -39.02388 -38.27312 -36.27412 -35.48046 -33.84832 -32.64912 -32.08212 -31.30021 -29.78213 -27.54378 -27.16067 -25.69407 -24.59234 -23.46167 -22.80478 -22.50880 -20.55685 -19.28092 -18.62406 -17.81566 -17.69920 -17.43405 -17.15676 -16.94979 -16.56704 -16.48549 -15.62935 -15.54649 -15.19571 -14.98247 -14.82092 -14.59939 -14.40797 -14.07250 -14.05908 -13.84115 -13.51179 -13.38835 -13.20480 -12.92464 -12.81410 -12.61550 -12.56734 -12.47160 -12.06366 -11.96355 -11.60406 -11.45864 -11.12336 -10.86412 -10.71165 -10.45591 -10.09863 -9.60924 -9.39361 -9.31841 -8.59860 -6.39681 0.04519 0.24529 0.52052 1.00961 1.36312 1.46143 1.52240 1.87601 2.05713 2.19561 2.74498 2.77878 3.35478 3.37834 3.65724 3.69822 3.72272 3.83391 3.89142 4.01572 4.06316 4.18712 4.36040 4.46763 4.52384 4.57539 4.61124 4.68159 4.80591 4.84712 4.92223 5.04458 5.10087 5.11992 5.21626 5.27519 5.33675 5.51327 5.59719 5.67929 5.86034 5.97275 6.05614 6.27383 6.34988 6.61870 6.74373 6.90049 6.93557 6.95416 7.19451 8.34814 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.002887 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.147581 B = 9695.165865 C =10908.281643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.601 5.601 3 C 0.093 3.907 4 C 0.155 3.845 5 H 0.078 0.922 6 O -0.552 6.552 7 C -0.172 4.172 8 C -0.081 4.081 9 C -0.168 4.168 10 C 0.091 3.909 11 N -0.504 5.504 12 C 0.105 3.895 13 C 0.559 3.441 14 O -0.586 6.586 15 C -0.131 4.131 16 C -0.194 4.194 17 C -0.098 4.098 18 C -0.214 4.214 19 C 0.068 3.932 20 C -0.496 4.496 21 H 0.083 0.917 22 C 0.025 3.975 23 N -0.834 5.834 24 Si 0.985 3.015 25 H -0.251 1.251 26 H -0.268 1.268 27 H -0.269 1.269 28 C -0.132 4.132 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.103 0.897 32 H 0.121 0.879 33 H 0.067 0.933 34 H 0.390 0.610 35 H 0.131 0.869 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.181 0.819 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.108 0.892 42 H 0.284 0.716 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.466 18.204 -3.486 18.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.332 5.332 3 C -0.030 4.030 4 C 0.093 3.907 5 H 0.096 0.904 6 O -0.360 6.360 7 C -0.175 4.175 8 C -0.107 4.107 9 C -0.188 4.188 10 C -0.066 4.066 11 N -0.212 5.212 12 C -0.052 4.052 13 C 0.350 3.650 14 O -0.467 6.467 15 C -0.135 4.135 16 C -0.213 4.213 17 C -0.116 4.116 18 C -0.234 4.234 19 C 0.066 3.934 20 C -0.526 4.526 21 H 0.101 0.899 22 C -0.188 4.188 23 N -0.461 5.461 24 Si 0.806 3.194 25 H -0.174 1.174 26 H -0.193 1.193 27 H -0.194 1.194 28 C -0.153 4.153 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.121 0.879 32 H 0.139 0.861 33 H 0.085 0.915 34 H 0.240 0.760 35 H 0.149 0.851 36 H 0.178 0.822 37 H 0.200 0.800 38 H 0.197 0.803 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.126 0.874 42 H 0.094 0.906 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.818 18.612 -3.784 19.201 hybrid contribution 1.191 -1.330 0.657 1.902 sum -1.627 17.282 -3.127 17.638 Atomic orbital electron populations 1.22243 0.76838 1.04343 1.02848 1.47657 1.08572 1.04247 1.72725 1.22263 0.98505 0.85581 0.96662 1.20803 0.84076 0.92519 0.93285 0.90373 1.86675 1.31495 1.60775 1.57052 1.21457 0.95818 0.97222 1.02981 1.21760 0.93732 1.00011 0.95174 1.22447 1.02722 0.92777 1.00804 1.23305 0.90631 0.98855 0.93764 1.67756 1.07838 1.32134 1.13512 1.22830 1.01160 0.86559 0.94638 1.18929 0.86446 0.85022 0.74617 1.90672 1.16030 1.88114 1.51852 1.19699 0.97555 0.93701 1.02504 1.21033 0.95711 0.99621 1.04982 1.20921 0.99592 0.92920 0.98141 1.21422 1.00345 0.99826 1.01815 1.17933 0.92087 0.91862 0.91566 1.19875 0.93300 1.12421 1.27032 0.89919 1.26861 0.96749 0.97407 0.97801 1.69913 1.03894 1.36568 1.35712 0.85108 0.78923 0.77841 0.77522 1.17433 1.19266 1.19409 1.21345 1.00323 0.92500 1.01085 0.91101 0.91517 0.87867 0.86087 0.91496 0.75998 0.85109 0.82191 0.79976 0.80262 0.84683 0.84499 0.87416 0.90581 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.81 8.58 127.77 1.10 2.90 16 2 N -0.60 -18.61 2.84 -850.14 -2.41 -21.02 16 3 C 0.09 2.28 5.05 86.38 0.44 2.72 16 4 C 0.15 3.61 3.47 29.85 0.10 3.71 16 5 H 0.08 2.43 8.03 -2.39 -0.02 2.41 16 6 O -0.55 -10.83 12.75 -148.98 -1.90 -12.73 16 7 C -0.17 -3.56 4.98 -19.77 -0.10 -3.66 16 8 C -0.08 -1.71 9.82 22.47 0.22 -1.49 16 9 C -0.17 -2.81 10.11 22.36 0.23 -2.59 16 10 C 0.09 1.50 11.18 84.69 0.95 2.45 16 11 N -0.50 -9.94 10.36 -195.84 -2.03 -11.97 16 12 C 0.10 1.85 10.49 84.67 0.89 2.74 16 13 C 0.56 24.50 7.30 86.80 0.63 25.14 16 14 O -0.59 -30.17 16.59 -3.85 -0.06 -30.23 16 15 C -0.13 -6.21 5.11 -20.13 -0.10 -6.31 16 16 C -0.19 -7.72 7.65 22.70 0.17 -7.55 16 17 C -0.10 -3.88 10.01 22.18 0.22 -3.66 16 18 C -0.21 -10.01 9.78 22.77 0.22 -9.78 16 19 C 0.07 3.67 5.56 -21.32 -0.12 3.56 16 20 C -0.50 -27.04 9.07 23.47 0.21 -26.82 16 21 H 0.08 4.25 7.87 -2.91 -0.02 4.23 16 22 C 0.03 1.32 5.25 85.25 0.45 1.77 16 23 N -0.83 -47.16 10.79 21.82 0.24 -46.93 16 24 Si 0.99 39.77 29.57 68.60 2.03 41.80 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 26 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 27 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 28 C -0.13 -7.29 8.28 23.01 0.19 -7.10 16 29 H 0.07 1.52 6.83 -2.39 -0.02 1.50 16 30 H 0.07 1.81 6.08 -2.39 -0.01 1.79 16 31 H 0.10 1.48 7.83 -2.39 -0.02 1.46 16 32 H 0.12 1.92 7.85 -2.39 -0.02 1.90 16 33 H 0.07 2.01 7.49 -2.39 -0.02 1.99 16 34 H 0.39 3.78 7.52 -74.06 -0.56 3.22 16 35 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.18 1.84 8.06 -2.91 -0.02 1.81 16 38 H 0.18 1.90 6.79 -2.91 -0.02 1.88 16 39 H 0.14 4.40 5.59 -2.91 -0.02 4.38 16 40 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 41 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 42 H 0.28 14.80 8.30 -92.71 -0.77 14.03 16 43 H 0.10 5.85 6.15 -2.91 -0.02 5.83 16 Total: -1.00 -75.69 362.55 2.06 -73.63 By element: Atomic # 1 Polarization: 30.94 SS G_CDS: 0.50 Total: 31.43 kcal Atomic # 6 Polarization: -29.69 SS G_CDS: 5.70 Total: -23.99 kcal Atomic # 7 Polarization: -75.71 SS G_CDS: -4.21 Total: -79.92 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.96 Total: -42.96 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.80 kcal Total: -75.69 2.06 -73.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413772414.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.273 kcal (2) G-P(sol) polarization free energy of solvation -75.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds