Wall clock time and date at job start Tue Mar 31 2020 14:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35677 * 116.99707 * 2 1 4 4 C 1.38929 * 119.68510 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.10994 * 180.02562 * 4 3 2 6 6 C 1.38822 * 118.48895 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.35729 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47374 * 90.00104 * 7 6 5 9 9 C 1.34769 * 120.00571 * 180.02562 * 8 7 6 10 10 O 1.21290 * 119.99500 * 359.97438 * 9 8 7 11 11 C 1.50691 * 120.00547 * 179.97438 * 9 8 7 12 12 H 1.09002 * 109.47184 * 300.00058 * 11 9 8 13 13 C 1.50705 * 109.47317 * 59.99870 * 11 9 8 14 14 H 1.08006 * 119.99589 * 33.93802 * 13 11 9 15 15 C 1.37873 * 120.00193 * 213.94231 * 13 11 9 16 16 N 1.31512 * 119.99996 * 6.39114 * 15 13 11 17 17 Si 1.86806 * 119.99913 * 186.38982 * 15 13 11 18 18 H 1.48500 * 109.46917 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46939 * 119.99823 * 17 15 13 20 20 H 1.48499 * 109.47254 * 240.00065 * 17 15 13 21 21 C 1.50705 * 109.47595 * 179.97438 * 11 9 8 22 22 C 1.38238 * 119.99775 * 293.84942 * 21 11 9 23 23 C 1.38232 * 119.99949 * 179.80822 * 22 21 11 24 24 C 1.38235 * 119.99801 * 0.39399 * 23 22 21 25 25 C 1.38237 * 120.00415 * 359.86082 * 24 23 22 26 26 C 1.38237 * 119.99928 * 114.11879 * 21 11 9 27 27 C 1.38045 * 119.28844 * 0.25539 * 6 5 4 28 28 N 1.31963 * 120.83532 * 359.45408 * 27 6 5 29 29 H 1.08995 * 109.47422 * 59.99897 * 1 2 3 30 30 H 1.09004 * 109.46659 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47142 * 299.99403 * 1 2 3 32 32 H 1.08000 * 120.43986 * 0.02562 * 4 3 2 33 33 H 1.08006 * 120.75145 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46974 * 330.00247 * 7 6 5 35 35 H 1.09002 * 109.47104 * 210.00294 * 7 6 5 36 36 H 0.97002 * 119.99685 * 0.02562 * 8 7 6 37 37 H 0.97004 * 119.99646 * 179.97438 * 16 15 13 38 38 H 1.08000 * 119.99939 * 359.97438 * 22 21 11 39 39 H 1.08000 * 120.00438 * 180.23356 * 23 22 21 40 40 H 1.08000 * 120.00277 * 179.83027 * 24 23 22 41 41 H 1.07996 * 120.00470 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.99981 * 359.97438 * 26 21 11 43 43 H 1.08006 * 119.58608 * 179.71922 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4326 1.2741 -0.0005 5 6 4.0483 2.5133 0.0000 6 6 3.2503 3.6492 0.0005 7 6 3.8765 5.0199 0.0017 8 7 4.0799 5.4652 -1.3791 9 6 4.6311 6.6703 -1.6244 10 8 4.9583 7.3865 -0.7018 11 6 4.8408 7.1280 -3.0447 12 1 5.4994 6.4278 -3.5586 13 6 3.5134 7.1833 -3.7559 14 1 2.6212 7.4594 -3.2134 15 6 3.4378 6.8813 -5.0991 16 7 4.4968 6.4244 -5.7309 17 14 1.8310 7.1212 -6.0213 18 1 0.7989 7.6432 -5.0900 19 1 2.0352 8.0910 -7.1272 20 1 1.3820 5.8206 -6.5800 21 6 5.4670 8.4988 -3.0436 22 6 4.7578 9.5822 -2.5595 23 6 5.3335 10.8389 -2.5547 24 6 6.6154 11.0136 -3.0416 25 6 7.3227 9.9312 -3.5306 26 6 6.7484 8.6738 -3.5318 27 6 1.8770 3.5097 0.0059 28 7 1.3185 2.3141 -0.0004 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 4.0228 0.3696 -0.0014 33 1 5.1253 2.5948 -0.0008 34 1 4.8368 4.9802 0.5158 35 1 3.2179 5.7199 0.5159 36 1 3.8179 4.8925 -2.1169 37 1 4.4434 6.2116 -6.6758 38 1 3.7549 9.4462 -2.1825 39 1 4.7809 11.6847 -2.1731 40 1 7.0643 11.9959 -3.0405 41 1 8.3240 10.0678 -3.9114 42 1 7.3009 7.8281 -3.9136 43 1 1.2515 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001432834568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:17 Heat of formation + Delta-G solvation = -19.286698 kcal Electronic energy + Delta-G solvation = -26490.007736 eV Core-core repulsion = 22693.222587 eV Total energy + Delta-G solvation = -3796.785148 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.75303 -39.16752 -38.21788 -37.59973 -34.45603 -33.65633 -32.45360 -31.18112 -30.85792 -29.94715 -27.92856 -27.29053 -25.55085 -23.82361 -23.51200 -21.98524 -21.59798 -20.76285 -19.31760 -18.52004 -17.21034 -16.85391 -16.42094 -16.13980 -15.87153 -15.39733 -14.83068 -14.60110 -14.58378 -14.37870 -14.17015 -13.83423 -13.70679 -13.41716 -13.16935 -12.73497 -12.55992 -12.30954 -12.30373 -12.08509 -11.71370 -11.60454 -11.45077 -11.30239 -11.08982 -11.00590 -10.40223 -10.28830 -10.06222 -9.96050 -9.72066 -9.45051 -8.87816 -8.71844 -8.40692 -8.37212 -7.95641 -7.62370 -6.29879 -4.34659 1.02287 1.15404 2.36414 2.39440 2.95380 3.17851 3.27236 3.30217 3.58413 3.70327 4.20360 4.24612 4.28066 4.70735 4.82843 4.88668 4.90692 5.02222 5.08494 5.14834 5.16868 5.44256 5.49631 5.71361 5.75629 5.77432 5.79336 5.87124 5.90590 6.19849 6.26134 6.31321 6.34766 6.48882 6.58909 6.86150 6.96364 7.08428 7.12883 7.20416 7.36009 7.43602 7.61465 7.73676 7.74777 7.94395 8.06093 8.35828 8.69741 9.21395 9.31615 10.78837 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003294 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.619939 B = 8498.323140 C = 9811.556344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.318 3.682 4 C -0.192 4.192 5 C -0.023 4.023 6 C -0.185 4.185 7 C 0.171 3.829 8 N -0.727 5.727 9 C 0.529 3.471 10 O -0.568 6.568 11 C 0.049 3.951 12 H 0.092 0.908 13 C -0.514 4.514 14 H 0.063 0.937 15 C 0.076 3.924 16 N -0.879 5.879 17 Si 0.895 3.105 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.282 1.282 21 C -0.012 4.012 22 C -0.085 4.085 23 C -0.134 4.134 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.120 4.120 27 C 0.160 3.840 28 N -0.541 5.541 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.407 0.593 37 H 0.266 0.734 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.112 0.888 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 -8.166 8.852 12.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.217 6.217 3 C 0.139 3.861 4 C -0.212 4.212 5 C -0.049 4.049 6 C -0.188 4.188 7 C 0.047 3.953 8 N -0.380 5.380 9 C 0.318 3.682 10 O -0.447 6.447 11 C 0.028 3.972 12 H 0.110 0.890 13 C -0.551 4.551 14 H 0.081 0.919 15 C -0.129 4.129 16 N -0.515 5.515 17 Si 0.722 3.278 18 H -0.194 1.194 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.013 4.013 22 C -0.103 4.103 23 C -0.153 4.153 24 C -0.167 4.167 25 C -0.150 4.150 26 C -0.138 4.138 27 C 0.004 3.996 28 N -0.264 5.264 29 H 0.078 0.922 30 H 0.112 0.888 31 H 0.077 0.923 32 H 0.159 0.841 33 H 0.162 0.838 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.242 0.758 37 H 0.076 0.924 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.130 0.870 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -2.815 -8.082 9.329 12.660 hybrid contribution -0.386 0.028 -1.094 1.160 sum -3.201 -8.054 8.235 11.955 Atomic orbital electron populations 1.22847 0.77281 1.02776 1.02587 1.86223 1.22916 1.24729 1.87878 1.19894 0.89474 0.84725 0.92014 1.21048 0.91940 0.99525 1.08722 1.21393 1.00757 0.90602 0.92127 1.20836 0.94911 0.96410 1.06663 1.19879 0.99877 0.89761 0.85817 1.46020 1.65139 1.20068 1.06798 1.21646 0.74170 0.79482 0.92862 1.90588 1.52041 1.54596 1.47441 1.18137 0.99085 0.91606 0.88410 0.89025 1.20709 0.91704 1.48479 0.94254 0.91888 1.24943 0.96772 0.93583 0.97619 1.69884 1.29075 1.42003 1.10541 0.86474 0.83304 0.78012 0.79980 1.19442 1.20663 1.20838 1.20062 0.91880 0.96638 0.92710 1.20834 0.99343 0.91903 0.98199 1.20961 0.95636 0.97039 1.01621 1.20803 0.95526 0.97849 1.02506 1.20905 0.99207 0.93357 1.01539 1.21003 0.95391 0.96687 1.00765 1.22399 0.92310 0.93587 0.91311 1.67355 1.40817 0.98752 1.19457 0.92167 0.88777 0.92346 0.84099 0.83839 0.91243 0.91117 0.75839 0.92369 0.87059 0.87575 0.87710 0.87552 0.86989 0.82072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.72 10.48 -18.73 -0.20 -3.92 16 3 C 0.32 4.11 7.49 -17.12 -0.13 3.98 16 4 C -0.19 -2.18 10.04 -39.27 -0.39 -2.58 16 5 C -0.02 -0.26 9.85 -39.31 -0.39 -0.65 16 6 C -0.19 -2.32 5.26 -104.48 -0.55 -2.87 16 7 C 0.17 2.45 5.82 -5.20 -0.03 2.42 16 8 N -0.73 -12.81 5.45 -61.48 -0.33 -13.14 16 9 C 0.53 11.35 7.04 -10.99 -0.08 11.27 16 10 O -0.57 -13.35 15.42 5.55 0.09 -13.26 16 11 C 0.05 1.13 2.44 -94.08 -0.23 0.90 16 12 H 0.09 2.27 7.00 -51.93 -0.36 1.91 16 13 C -0.51 -12.64 7.46 -34.44 -0.26 -12.90 16 14 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 15 C 0.08 1.90 5.45 -17.82 -0.10 1.80 16 16 N -0.88 -22.98 12.78 55.43 0.71 -22.27 16 17 Si 0.90 19.96 29.54 -169.99 -5.02 14.94 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 C -0.01 -0.27 4.30 -104.62 -0.45 -0.72 16 22 C -0.08 -1.88 8.31 -39.58 -0.33 -2.21 16 23 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 24 C -0.15 -2.74 10.05 -39.58 -0.40 -3.14 16 25 C -0.13 -2.53 10.05 -39.58 -0.40 -2.92 16 26 C -0.12 -2.60 9.67 -39.58 -0.38 -2.98 16 27 C 0.16 2.05 10.85 -17.57 -0.19 1.86 16 28 N -0.54 -7.30 9.22 -13.33 -0.12 -7.42 16 29 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 30 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.10 16 32 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.14 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.07 0.98 8.09 -51.93 -0.42 0.56 16 35 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16 36 H 0.41 7.13 8.35 -40.82 -0.34 6.79 16 37 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 38 H 0.11 2.49 7.89 -52.49 -0.41 2.08 16 39 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.11 2.33 7.96 -52.49 -0.42 1.91 16 43 H 0.16 1.85 8.06 -52.48 -0.42 1.42 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -29.71 374.93 -8.60 -38.32 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.72 Total: 11.45 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -3.65 Total: -10.34 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.25 Total: -42.83 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.11 Total: -17.18 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.71 -8.60 -38.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001432834568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.031 kcal (2) G-P(sol) polarization free energy of solvation -29.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds