Wall clock time and date at job start Tue Mar 31 2020 14:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35677 * 116.99707 * 2 1 4 4 C 1.38929 * 119.68510 * 180.02562 * 3 2 1 5 5 C 1.38378 * 119.10994 * 180.02562 * 4 3 2 6 6 C 1.38822 * 118.48895 * 359.97438 * 5 4 3 7 7 C 1.50698 * 120.35729 * 179.97438 * 6 5 4 8 8 N 1.46499 * 109.47374 * 90.00104 * 7 6 5 9 9 C 1.34769 * 120.00571 * 180.02562 * 8 7 6 10 10 O 1.21290 * 119.99500 * 359.97438 * 9 8 7 11 11 C 1.50691 * 120.00547 * 179.97438 * 9 8 7 12 12 H 1.09002 * 109.47184 * 300.00058 * 11 9 8 13 13 C 1.50705 * 109.47317 * 59.99870 * 11 9 8 14 14 H 1.08006 * 119.99589 * 33.93802 * 13 11 9 15 15 C 1.37873 * 120.00193 * 213.94231 * 13 11 9 16 16 N 1.31512 * 119.99996 * 6.39114 * 15 13 11 17 17 Si 1.86806 * 119.99913 * 186.38982 * 15 13 11 18 18 H 1.48500 * 109.46917 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46939 * 119.99823 * 17 15 13 20 20 H 1.48499 * 109.47254 * 240.00065 * 17 15 13 21 21 C 1.50705 * 109.47595 * 179.97438 * 11 9 8 22 22 C 1.38238 * 119.99775 * 293.84942 * 21 11 9 23 23 C 1.38232 * 119.99949 * 179.80822 * 22 21 11 24 24 C 1.38235 * 119.99801 * 0.39399 * 23 22 21 25 25 C 1.38237 * 120.00415 * 359.86082 * 24 23 22 26 26 C 1.38237 * 119.99928 * 114.11879 * 21 11 9 27 27 C 1.38045 * 119.28844 * 0.25539 * 6 5 4 28 28 N 1.31963 * 120.83532 * 359.45408 * 27 6 5 29 29 H 1.08995 * 109.47422 * 59.99897 * 1 2 3 30 30 H 1.09004 * 109.46659 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47142 * 299.99403 * 1 2 3 32 32 H 1.08000 * 120.43986 * 0.02562 * 4 3 2 33 33 H 1.08006 * 120.75145 * 180.02562 * 5 4 3 34 34 H 1.08998 * 109.46974 * 330.00247 * 7 6 5 35 35 H 1.09002 * 109.47104 * 210.00294 * 7 6 5 36 36 H 0.97002 * 119.99685 * 0.02562 * 8 7 6 37 37 H 0.97004 * 119.99646 * 179.97438 * 16 15 13 38 38 H 1.08000 * 119.99939 * 359.97438 * 22 21 11 39 39 H 1.08000 * 120.00438 * 180.23356 * 23 22 21 40 40 H 1.08000 * 120.00277 * 179.83027 * 24 23 22 41 41 H 1.07996 * 120.00470 * 179.97438 * 25 24 23 42 42 H 1.07997 * 119.99981 * 359.97438 * 26 21 11 43 43 H 1.08006 * 119.58608 * 179.71922 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 3.4326 1.2741 -0.0005 5 6 4.0483 2.5133 0.0000 6 6 3.2503 3.6492 0.0005 7 6 3.8765 5.0199 0.0017 8 7 4.0799 5.4652 -1.3791 9 6 4.6311 6.6703 -1.6244 10 8 4.9583 7.3865 -0.7018 11 6 4.8408 7.1280 -3.0447 12 1 5.4994 6.4278 -3.5586 13 6 3.5134 7.1833 -3.7559 14 1 2.6212 7.4594 -3.2134 15 6 3.4378 6.8813 -5.0991 16 7 4.4968 6.4244 -5.7309 17 14 1.8310 7.1212 -6.0213 18 1 0.7989 7.6432 -5.0900 19 1 2.0352 8.0910 -7.1272 20 1 1.3820 5.8206 -6.5800 21 6 5.4670 8.4988 -3.0436 22 6 4.7578 9.5822 -2.5595 23 6 5.3335 10.8389 -2.5547 24 6 6.6154 11.0136 -3.0416 25 6 7.3227 9.9312 -3.5306 26 6 6.7484 8.6738 -3.5318 27 6 1.8770 3.5097 0.0059 28 7 1.3185 2.3141 -0.0004 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 4.0228 0.3696 -0.0014 33 1 5.1253 2.5948 -0.0008 34 1 4.8368 4.9802 0.5158 35 1 3.2179 5.7199 0.5159 36 1 3.8179 4.8925 -2.1169 37 1 4.4434 6.2116 -6.6758 38 1 3.7549 9.4462 -2.1825 39 1 4.7809 11.6847 -2.1731 40 1 7.0643 11.9959 -3.0405 41 1 8.3240 10.0678 -3.9114 42 1 7.3009 7.8281 -3.9136 43 1 1.2515 4.3902 0.0109 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001432834568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:16 Heat of formation + Delta-G solvation = -37.583532 kcal Electronic energy + Delta-G solvation = -26490.801146 eV Core-core repulsion = 22693.222587 eV Total energy + Delta-G solvation = -3797.578559 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.72090 -40.77714 -39.43388 -38.91024 -35.82002 -35.49921 -33.47008 -32.89376 -32.04182 -31.52103 -29.31026 -28.39616 -26.84287 -25.53201 -24.46357 -23.22416 -23.05450 -22.26916 -20.95464 -19.41887 -18.69161 -18.16483 -17.94299 -17.55343 -17.05034 -16.81351 -16.38736 -15.97509 -15.76848 -15.59118 -15.44744 -15.26897 -15.10220 -14.51570 -14.30013 -14.11290 -14.06007 -13.93225 -13.72730 -13.30136 -13.20899 -12.93735 -12.88339 -12.76068 -12.59302 -12.20888 -12.15649 -11.94593 -11.64861 -11.25612 -10.97288 -10.71247 -10.69667 -10.43439 -9.87178 -9.55235 -9.49693 -9.23937 -8.22364 -6.31427 0.03709 0.21600 0.76848 0.81824 1.39201 1.43807 1.52684 1.97869 2.10570 2.42037 2.47103 2.91243 3.08707 3.28750 3.30104 3.65827 3.92170 3.97204 4.15975 4.24227 4.31763 4.40988 4.41782 4.44479 4.49696 4.55789 4.55957 4.73556 4.77962 4.81713 4.89707 4.90490 4.98816 5.15011 5.27232 5.38370 5.40004 5.46841 5.65005 5.67453 5.80078 5.84655 5.96206 6.17666 6.24969 6.41891 6.71841 6.76354 6.81302 7.35175 7.56330 8.86193 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.003294 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.619939 B = 8498.323140 C = 9811.556344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.304 3.696 4 C -0.191 4.191 5 C -0.019 4.019 6 C -0.189 4.189 7 C 0.176 3.824 8 N -0.716 5.716 9 C 0.528 3.472 10 O -0.591 6.591 11 C 0.050 3.950 12 H 0.069 0.931 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.037 3.963 16 N -0.906 5.906 17 Si 0.947 3.053 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.277 1.277 21 C -0.040 4.040 22 C -0.110 4.110 23 C -0.135 4.135 24 C -0.143 4.143 25 C -0.130 4.130 26 C -0.144 4.144 27 C 0.152 3.848 28 N -0.556 5.556 29 H 0.051 0.949 30 H 0.124 0.876 31 H 0.057 0.943 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.407 0.593 37 H 0.267 0.733 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.107 0.893 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.029 -7.862 9.155 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.225 6.225 3 C 0.126 3.874 4 C -0.211 4.211 5 C -0.044 4.044 6 C -0.192 4.192 7 C 0.052 3.948 8 N -0.367 5.367 9 C 0.318 3.682 10 O -0.472 6.472 11 C 0.029 3.971 12 H 0.087 0.913 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.165 4.165 16 N -0.543 5.543 17 Si 0.773 3.227 18 H -0.193 1.193 19 H -0.210 1.210 20 H -0.202 1.202 21 C -0.042 4.042 22 C -0.128 4.128 23 C -0.153 4.153 24 C -0.161 4.161 25 C -0.147 4.147 26 C -0.162 4.162 27 C -0.004 4.004 28 N -0.280 5.280 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.076 0.924 32 H 0.182 0.818 33 H 0.182 0.818 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.242 0.758 37 H 0.076 0.924 38 H 0.115 0.885 39 H 0.154 0.846 40 H 0.164 0.836 41 H 0.157 0.843 42 H 0.126 0.874 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -2.564 -7.810 9.645 12.673 hybrid contribution -0.457 -0.086 -1.134 1.226 sum -3.022 -7.896 8.511 11.997 Atomic orbital electron populations 1.23047 0.75975 1.04660 1.02129 1.86219 1.24276 1.24300 1.87718 1.20243 0.90286 0.84891 0.92026 1.21327 0.91604 1.00397 1.07750 1.21644 1.01741 0.90101 0.90954 1.20647 0.94914 0.95759 1.07884 1.19943 1.00372 0.90787 0.83651 1.45949 1.63544 1.18730 1.08455 1.21330 0.74576 0.80407 0.91921 1.90558 1.53416 1.55580 1.47681 1.18024 0.98042 0.91830 0.89208 0.91293 1.20775 0.91997 1.47827 0.94451 0.92811 1.25517 0.99125 0.93579 0.98248 1.69976 1.30505 1.43158 1.10662 0.85661 0.80421 0.77899 0.78685 1.19273 1.21008 1.20226 1.20156 0.93036 0.96619 0.94340 1.20871 0.99117 0.93189 0.99657 1.21335 0.96437 0.96727 1.00799 1.21279 0.94818 0.99445 1.00574 1.21307 1.00596 0.92387 1.00456 1.21158 0.95288 0.98092 1.01686 1.22549 0.92654 0.93810 0.91378 1.67353 1.41352 0.99073 1.20176 0.92973 0.85776 0.92427 0.81834 0.81784 0.90595 0.91228 0.75798 0.92401 0.88503 0.84641 0.83572 0.84262 0.87448 0.81450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.81 16 2 O -0.32 -7.27 10.48 -89.95 -0.94 -8.21 16 3 C 0.30 7.58 7.49 84.80 0.63 8.22 16 4 C -0.19 -4.03 10.04 22.47 0.23 -3.81 16 5 C -0.02 -0.40 9.85 22.44 0.22 -0.18 16 6 C -0.19 -4.62 5.26 -19.77 -0.10 -4.72 16 7 C 0.18 5.00 5.82 85.63 0.50 5.50 16 8 N -0.72 -25.61 5.45 -466.81 -2.54 -28.15 16 9 C 0.53 23.33 7.04 87.66 0.62 23.94 16 10 O -0.59 -28.39 15.42 -3.06 -0.05 -28.43 16 11 C 0.05 2.42 2.44 -13.03 -0.03 2.39 16 12 H 0.07 3.59 7.00 -2.39 -0.02 3.57 16 13 C -0.51 -25.89 7.46 25.60 0.19 -25.70 16 14 H 0.05 2.76 7.82 -2.91 -0.02 2.73 16 15 C 0.04 1.90 5.45 84.65 0.46 2.36 16 16 N -0.91 -48.29 12.78 21.45 0.27 -48.01 16 17 Si 0.95 41.26 29.54 68.60 2.03 43.29 16 18 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 19 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 20 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 21 C -0.04 -1.92 4.30 -19.86 -0.09 -2.00 16 22 C -0.11 -4.94 8.31 22.27 0.19 -4.76 16 23 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 24 C -0.14 -4.84 10.05 22.27 0.22 -4.62 16 25 C -0.13 -4.70 10.05 22.27 0.22 -4.48 16 26 C -0.14 -6.27 9.67 22.27 0.22 -6.05 16 27 C 0.15 3.85 10.85 84.63 0.92 4.77 16 28 N -0.56 -14.78 9.22 -308.94 -2.85 -17.62 16 29 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 30 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 32 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 33 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.08 2.09 8.09 -2.39 -0.02 2.07 16 35 H 0.07 2.02 8.09 -2.39 -0.02 2.00 16 36 H 0.41 14.55 8.35 -92.71 -0.77 13.77 16 37 H 0.27 13.58 8.31 -92.71 -0.77 12.81 16 38 H 0.10 4.49 7.89 -2.91 -0.02 4.46 16 39 H 0.14 4.15 8.06 -2.91 -0.02 4.13 16 40 H 0.15 3.73 8.06 -2.91 -0.02 3.71 16 41 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 42 H 0.11 4.61 7.96 -2.91 -0.02 4.59 16 43 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -64.55 374.93 1.97 -62.58 By element: Atomic # 1 Polarization: 36.46 SS G_CDS: 0.25 Total: 36.71 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 5.80 Total: -12.15 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -5.12 Total: -93.79 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.99 Total: -36.65 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -64.55 1.97 -62.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001432834568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.995 kcal (2) G-P(sol) polarization free energy of solvation -64.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds