Wall clock time and date at job start Tue Mar 31 2020 14:12:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 117.00330 * 2 1 4 4 C 1.38906 * 119.61030 * 179.97438 * 3 2 1 5 5 C 1.38323 * 119.18721 * 179.97438 * 4 3 2 6 6 C 1.39372 * 118.42097 * 0.25827 * 5 4 3 7 7 N 1.40153 * 120.42007 * 179.74758 * 6 5 4 8 8 C 1.46500 * 119.99896 * 114.74811 * 7 6 5 9 9 C 1.34766 * 120.00032 * 294.74371 * 7 6 5 10 10 O 1.21297 * 120.00411 * 5.32393 * 9 7 6 11 11 C 1.50700 * 120.00235 * 185.32145 * 9 7 6 12 12 H 1.09003 * 109.47137 * 299.99711 * 11 9 7 13 13 C 1.50701 * 109.47328 * 59.99849 * 11 9 7 14 14 H 1.08005 * 119.99748 * 34.95225 * 13 11 9 15 15 C 1.37867 * 120.00206 * 214.95165 * 13 11 9 16 16 N 1.31518 * 120.00483 * 5.00135 * 15 13 11 17 17 Si 1.86800 * 120.00093 * 185.00358 * 15 13 11 18 18 H 1.48500 * 109.47083 * 59.99818 * 17 15 13 19 19 H 1.48499 * 109.47380 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47200 * 300.00209 * 17 15 13 21 21 C 1.50697 * 109.47392 * 180.02562 * 11 9 7 22 22 C 1.38234 * 120.00089 * 294.58907 * 21 11 9 23 23 C 1.38237 * 119.99724 * 179.80709 * 22 21 11 24 24 C 1.38236 * 120.00370 * 0.40207 * 23 22 21 25 25 C 1.38232 * 119.99956 * 359.85211 * 24 23 22 26 26 C 1.38236 * 119.99808 * 359.95801 * 25 24 23 27 27 C 1.38658 * 119.15428 * 359.49782 * 6 5 4 28 28 N 1.31948 * 120.73498 * 0.50995 * 27 6 5 29 29 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47190 * 300.00383 * 1 2 3 31 31 H 1.09001 * 109.46552 * 59.99861 * 1 2 3 32 32 H 1.08005 * 120.40976 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.78510 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47713 * 89.99699 * 8 7 6 35 35 H 1.09004 * 109.47074 * 209.99965 * 8 7 6 36 36 H 1.08998 * 109.47071 * 329.99790 * 8 7 6 37 37 H 0.97000 * 120.00164 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.00272 * 359.97438 * 22 21 11 39 39 H 1.08000 * 119.99646 * 180.23058 * 23 22 21 40 40 H 1.07999 * 119.99859 * 179.83550 * 24 23 22 41 41 H 1.07993 * 120.00451 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.99989 * 179.97438 * 26 25 24 43 43 H 1.08003 * 119.63296 * 180.27524 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2094 0.0000 4 6 3.4330 1.2726 0.0005 5 6 4.0519 2.5097 0.0000 6 6 3.2525 3.6514 0.0044 7 7 3.8356 4.9258 0.0094 8 6 3.6573 5.8174 -1.1393 9 6 4.5601 5.3313 1.0709 10 8 4.7890 4.5605 1.9792 11 6 5.0861 6.7423 1.1297 12 1 5.7434 6.9207 0.2787 13 6 3.9324 7.7108 1.0851 14 1 2.9976 7.4596 1.5643 15 6 4.0701 8.9175 0.4327 16 7 5.1723 9.1826 -0.2341 17 14 2.6911 10.1760 0.4956 18 1 2.4343 10.5587 1.9072 19 1 3.0841 11.3801 -0.2795 20 1 1.4588 9.5899 -0.0904 21 6 5.8577 6.9379 2.4093 22 6 5.2053 6.8750 3.6263 23 6 5.9138 7.0505 4.8003 24 6 7.2733 7.2972 4.7568 25 6 7.9248 7.3654 3.5396 26 6 7.2170 7.1860 2.3658 27 6 1.8732 3.5102 -0.0014 28 7 1.3178 2.3133 -0.0009 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 4.0215 0.3670 0.0005 33 1 5.1290 2.5889 0.0008 34 1 2.7644 6.4250 -0.9927 35 1 4.5275 6.4671 -1.2336 36 1 3.5474 5.2234 -2.0466 37 1 5.2693 10.0318 -0.6928 38 1 4.1425 6.6860 3.6602 39 1 5.4047 6.9976 5.7513 40 1 7.8263 7.4370 5.6739 41 1 8.9868 7.5586 3.5055 42 1 7.7259 7.2397 1.4147 43 1 1.2464 4.3897 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433193101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:36 Heat of formation + Delta-G solvation = -1.033661 kcal Electronic energy + Delta-G solvation = -27421.927738 eV Core-core repulsion = 23625.934100 eV Total energy + Delta-G solvation = -3795.993637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.68628 -39.42231 -38.18494 -37.34287 -34.85197 -33.77442 -32.22514 -31.18032 -29.98944 -29.85489 -27.57768 -27.00434 -26.04601 -24.13296 -23.26273 -22.77970 -21.64819 -20.75411 -18.82837 -18.33825 -17.06236 -16.92434 -16.48217 -16.01644 -15.86139 -15.71724 -14.56060 -14.52065 -14.46762 -14.29365 -13.99060 -13.72153 -13.34578 -13.22205 -12.95917 -12.59443 -12.49840 -12.31120 -12.21851 -11.87862 -11.79817 -11.70537 -11.39466 -11.15185 -11.08355 -11.04176 -10.44818 -10.32825 -10.05855 -9.85125 -9.71475 -9.53441 -8.91093 -8.72450 -8.59448 -7.99828 -7.80944 -7.67341 -6.34796 -4.38986 1.24109 1.39495 2.31950 2.34628 3.10304 3.16724 3.23149 3.25146 3.49478 3.62610 3.88370 4.22686 4.42818 4.75342 5.02742 5.06313 5.12960 5.21879 5.26152 5.28816 5.52747 5.67952 5.70126 5.73331 5.77598 5.82832 5.93356 5.99621 6.14860 6.21054 6.35392 6.42190 6.45665 6.53231 6.60928 6.81116 6.90106 7.10813 7.14383 7.31992 7.35744 7.43040 7.56218 7.68844 7.87480 7.90566 7.95096 8.06878 8.62389 9.04811 9.25240 10.73633 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004098 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.490190 B = 6831.433784 C = 8256.086182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.302 3.698 4 C -0.178 4.178 5 C -0.033 4.033 6 C 0.078 3.922 7 N -0.569 5.569 8 C 0.098 3.902 9 C 0.529 3.471 10 O -0.553 6.553 11 C 0.054 3.946 12 H 0.096 0.904 13 C -0.511 4.511 14 H 0.061 0.939 15 C 0.078 3.922 16 N -0.879 5.879 17 Si 0.895 3.105 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.274 1.274 21 C -0.015 4.015 22 C -0.084 4.084 23 C -0.134 4.134 24 C -0.147 4.147 25 C -0.132 4.132 26 C -0.119 4.119 27 C 0.133 3.867 28 N -0.531 5.531 29 H 0.092 0.908 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.048 0.952 37 H 0.269 0.731 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.107 0.893 42 H 0.113 0.887 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 -9.496 -2.042 10.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.219 6.219 3 C 0.123 3.877 4 C -0.200 4.200 5 C -0.061 4.061 6 C -0.016 4.016 7 N -0.300 5.300 8 C -0.044 4.044 9 C 0.322 3.678 10 O -0.430 6.430 11 C 0.033 3.967 12 H 0.113 0.887 13 C -0.548 4.548 14 H 0.079 0.921 15 C -0.127 4.127 16 N -0.515 5.515 17 Si 0.722 3.278 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.199 1.199 21 C -0.016 4.016 22 C -0.102 4.102 23 C -0.152 4.152 24 C -0.165 4.165 25 C -0.150 4.150 26 C -0.137 4.137 27 C -0.024 4.024 28 N -0.254 5.254 29 H 0.110 0.890 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.128 0.872 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.125 0.875 42 H 0.131 0.869 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.539 -10.053 -1.687 10.791 hybrid contribution -0.127 1.139 0.057 1.147 sum -3.666 -8.915 -1.629 9.776 Atomic orbital electron populations 1.22801 0.77622 1.02519 1.02436 1.86220 1.22610 1.24720 1.88372 1.19770 0.89358 0.84602 0.93920 1.20915 0.91775 0.99017 1.08253 1.21564 1.00885 0.90550 0.93059 1.18564 0.92317 0.86730 1.03951 1.45405 1.52470 1.12319 1.19776 1.21829 1.04875 0.92718 0.84964 1.22004 0.75535 0.90780 0.79474 1.90615 1.58206 1.56629 1.37532 1.18150 0.97068 0.87348 0.94153 0.88681 1.20565 0.97169 1.01109 1.35966 0.92069 1.24885 0.95916 0.97949 0.93914 1.69843 1.26013 1.24225 1.31420 0.86593 0.81936 0.80671 0.78623 1.19938 1.21044 1.19887 1.20036 0.92465 0.93548 0.95521 1.20825 0.99388 0.98122 0.91867 1.20965 0.94421 1.02127 0.97699 1.20812 0.94792 1.03939 0.97005 1.20906 0.98846 1.02298 0.92935 1.20992 0.94151 1.01088 0.97498 1.22551 0.92052 0.93688 0.94151 1.67276 1.40408 0.98440 1.19297 0.88966 0.92404 0.92440 0.84170 0.84155 0.91793 0.88697 0.93369 0.92133 0.87164 0.87570 0.87665 0.87494 0.86925 0.82154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.21 10.48 -18.94 -0.20 -4.40 16 3 C 0.30 4.56 7.49 -17.14 -0.13 4.43 16 4 C -0.18 -2.56 10.03 -39.30 -0.39 -2.95 16 5 C -0.03 -0.53 9.37 -39.13 -0.37 -0.90 16 6 C 0.08 1.34 4.91 -83.48 -0.41 0.93 16 7 N -0.57 -10.57 2.95 -120.67 -0.36 -10.92 16 8 C 0.10 1.64 9.06 59.85 0.54 2.18 16 9 C 0.53 11.46 6.81 -10.99 -0.07 11.38 16 10 O -0.55 -13.15 14.89 5.54 0.08 -13.07 16 11 C 0.05 1.21 1.66 -94.08 -0.16 1.06 16 12 H 0.10 2.25 6.09 -51.93 -0.32 1.93 16 13 C -0.51 -12.01 5.85 -34.44 -0.20 -12.21 16 14 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 15 C 0.08 1.86 5.45 -17.82 -0.10 1.76 16 16 N -0.88 -21.59 12.77 55.43 0.71 -20.89 16 17 Si 0.89 19.08 29.54 -169.99 -5.02 14.06 16 18 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.01 -0.33 4.31 -104.62 -0.45 -0.78 16 22 C -0.08 -1.85 8.27 -39.58 -0.33 -2.18 16 23 C -0.13 -2.61 10.05 -39.58 -0.40 -3.00 16 24 C -0.15 -2.68 10.05 -39.58 -0.40 -3.08 16 25 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 26 C -0.12 -2.51 9.67 -39.58 -0.38 -2.89 16 27 C 0.13 2.13 10.97 -17.35 -0.19 1.94 16 28 N -0.53 -8.35 9.20 -13.18 -0.12 -8.47 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 31 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 32 H 0.14 1.65 8.06 -52.48 -0.42 1.23 16 33 H 0.14 2.15 8.06 -52.49 -0.42 1.72 16 34 H 0.06 1.09 7.82 -51.93 -0.41 0.68 16 35 H 0.09 1.76 6.36 -51.93 -0.33 1.43 16 36 H 0.05 0.67 8.05 -51.93 -0.42 0.25 16 37 H 0.27 6.40 8.31 -40.82 -0.34 6.07 16 38 H 0.11 2.48 7.91 -52.49 -0.42 2.06 16 39 H 0.11 1.78 8.06 -52.49 -0.42 1.35 16 40 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 41 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 42 H 0.11 2.27 7.95 -52.49 -0.42 1.86 16 43 H 0.16 2.37 8.06 -52.48 -0.42 1.95 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -28.03 368.55 -7.79 -35.81 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.65 Total: 8.03 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -2.78 Total: -5.70 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.23 Total: -40.28 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.12 Total: -17.47 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.02 Total: 14.06 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -28.03 -7.79 -35.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433193101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.780 kcal (2) G-P(sol) polarization free energy of solvation -28.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds