Wall clock time and date at job start Tue Mar 31 2020 14:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 117.00330 * 2 1 4 4 C 1.38906 * 119.61030 * 179.97438 * 3 2 1 5 5 C 1.38323 * 119.18721 * 179.97438 * 4 3 2 6 6 C 1.39372 * 118.42097 * 0.25827 * 5 4 3 7 7 N 1.40153 * 120.42007 * 179.74758 * 6 5 4 8 8 C 1.46500 * 119.99896 * 114.74811 * 7 6 5 9 9 C 1.34766 * 120.00032 * 294.74371 * 7 6 5 10 10 O 1.21297 * 120.00411 * 5.32393 * 9 7 6 11 11 C 1.50700 * 120.00235 * 185.32145 * 9 7 6 12 12 H 1.09003 * 109.47137 * 299.99711 * 11 9 7 13 13 C 1.50701 * 109.47328 * 59.99849 * 11 9 7 14 14 H 1.08005 * 119.99748 * 34.95225 * 13 11 9 15 15 C 1.37867 * 120.00206 * 214.95165 * 13 11 9 16 16 N 1.31518 * 120.00483 * 5.00135 * 15 13 11 17 17 Si 1.86800 * 120.00093 * 185.00358 * 15 13 11 18 18 H 1.48500 * 109.47083 * 59.99818 * 17 15 13 19 19 H 1.48499 * 109.47380 * 179.97438 * 17 15 13 20 20 H 1.48506 * 109.47200 * 300.00209 * 17 15 13 21 21 C 1.50697 * 109.47392 * 180.02562 * 11 9 7 22 22 C 1.38234 * 120.00089 * 294.58907 * 21 11 9 23 23 C 1.38237 * 119.99724 * 179.80709 * 22 21 11 24 24 C 1.38236 * 120.00370 * 0.40207 * 23 22 21 25 25 C 1.38232 * 119.99956 * 359.85211 * 24 23 22 26 26 C 1.38236 * 119.99808 * 359.95801 * 25 24 23 27 27 C 1.38658 * 119.15428 * 359.49782 * 6 5 4 28 28 N 1.31948 * 120.73498 * 0.50995 * 27 6 5 29 29 H 1.08998 * 109.47430 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47190 * 300.00383 * 1 2 3 31 31 H 1.09001 * 109.46552 * 59.99861 * 1 2 3 32 32 H 1.08005 * 120.40976 * 0.02562 * 4 3 2 33 33 H 1.08000 * 120.78510 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47713 * 89.99699 * 8 7 6 35 35 H 1.09004 * 109.47074 * 209.99965 * 8 7 6 36 36 H 1.08998 * 109.47071 * 329.99790 * 8 7 6 37 37 H 0.97000 * 120.00164 * 180.02562 * 16 15 13 38 38 H 1.07996 * 120.00272 * 359.97438 * 22 21 11 39 39 H 1.08000 * 119.99646 * 180.23058 * 23 22 21 40 40 H 1.07999 * 119.99859 * 179.83550 * 24 23 22 41 41 H 1.07993 * 120.00451 * 179.97438 * 25 24 23 42 42 H 1.08000 * 119.99989 * 179.97438 * 26 25 24 43 43 H 1.08003 * 119.63296 * 180.27524 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2094 0.0000 4 6 3.4330 1.2726 0.0005 5 6 4.0519 2.5097 0.0000 6 6 3.2525 3.6514 0.0044 7 7 3.8356 4.9258 0.0094 8 6 3.6573 5.8174 -1.1393 9 6 4.5601 5.3313 1.0709 10 8 4.7890 4.5605 1.9792 11 6 5.0861 6.7423 1.1297 12 1 5.7434 6.9207 0.2787 13 6 3.9324 7.7108 1.0851 14 1 2.9976 7.4596 1.5643 15 6 4.0701 8.9175 0.4327 16 7 5.1723 9.1826 -0.2341 17 14 2.6911 10.1760 0.4956 18 1 2.4343 10.5587 1.9072 19 1 3.0841 11.3801 -0.2795 20 1 1.4588 9.5899 -0.0904 21 6 5.8577 6.9379 2.4093 22 6 5.2053 6.8750 3.6263 23 6 5.9138 7.0505 4.8003 24 6 7.2733 7.2972 4.7568 25 6 7.9248 7.3654 3.5396 26 6 7.2170 7.1860 2.3658 27 6 1.8732 3.5102 -0.0014 28 7 1.3178 2.3133 -0.0009 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3632 0.5139 -0.8900 32 1 4.0215 0.3670 0.0005 33 1 5.1290 2.5889 0.0008 34 1 2.7644 6.4250 -0.9927 35 1 4.5275 6.4671 -1.2336 36 1 3.5474 5.2234 -2.0466 37 1 5.2693 10.0318 -0.6928 38 1 4.1425 6.6860 3.6602 39 1 5.4047 6.9976 5.7513 40 1 7.8263 7.4370 5.6739 41 1 8.9868 7.5586 3.5055 42 1 7.7259 7.2397 1.4147 43 1 1.2464 4.3897 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433193101.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:35 Heat of formation + Delta-G solvation = -16.269816 kcal Electronic energy + Delta-G solvation = -27422.588427 eV Core-core repulsion = 23625.934100 eV Total energy + Delta-G solvation = -3796.654327 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.97195 -40.90083 -39.60285 -38.65030 -36.39200 -35.49690 -33.46344 -32.87410 -31.54433 -31.11822 -29.06710 -28.12285 -27.49792 -25.84278 -24.47366 -24.13644 -23.21445 -22.24947 -20.38061 -19.44882 -18.68335 -18.32259 -18.03484 -17.43508 -17.34642 -16.96568 -16.26201 -15.98750 -15.78357 -15.57269 -15.44725 -15.06696 -14.82628 -14.43879 -14.26470 -14.10368 -14.03656 -13.78269 -13.64216 -13.43145 -13.31206 -12.94996 -12.82874 -12.75003 -12.70317 -12.17853 -12.14871 -11.94468 -11.65033 -11.29359 -11.11745 -10.94839 -10.68765 -10.44121 -9.97498 -9.56743 -9.29143 -9.14656 -8.18449 -6.26641 0.01255 0.15336 0.74518 0.78722 1.44872 1.48500 1.53056 1.81204 2.01023 2.23063 2.44524 2.64452 3.09766 3.25412 3.27066 3.82609 3.99991 4.05018 4.20309 4.29419 4.31481 4.38598 4.44287 4.44637 4.47544 4.53043 4.61493 4.68602 4.78578 4.79449 4.88020 4.96205 5.07693 5.10860 5.20878 5.26075 5.35224 5.44797 5.67380 5.77316 5.78871 5.86719 5.95731 6.18588 6.22086 6.34538 6.45970 6.70541 6.75898 7.37151 7.41388 8.89511 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.004098 C = 0.003391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.490190 B = 6831.433784 C = 8256.086182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.314 6.314 3 C 0.300 3.700 4 C -0.172 4.172 5 C -0.038 4.038 6 C 0.053 3.947 7 N -0.562 5.562 8 C 0.103 3.897 9 C 0.528 3.472 10 O -0.580 6.580 11 C 0.059 3.941 12 H 0.078 0.922 13 C -0.509 4.509 14 H 0.048 0.952 15 C 0.048 3.952 16 N -0.900 5.900 17 Si 0.942 3.058 18 H -0.284 1.284 19 H -0.283 1.283 20 H -0.263 1.263 21 C -0.042 4.042 22 C -0.110 4.110 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.129 4.129 26 C -0.141 4.141 27 C 0.132 3.868 28 N -0.536 5.536 29 H 0.126 0.874 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.168 0.832 33 H 0.141 0.859 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.268 0.732 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.141 0.859 42 H 0.110 0.890 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.060 -10.382 -1.461 10.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.222 6.222 3 C 0.120 3.880 4 C -0.193 4.193 5 C -0.065 4.065 6 C -0.041 4.041 7 N -0.291 5.291 8 C -0.038 4.038 9 C 0.320 3.680 10 O -0.460 6.460 11 C 0.038 3.962 12 H 0.096 0.904 13 C -0.546 4.546 14 H 0.066 0.934 15 C -0.155 4.155 16 N -0.537 5.537 17 Si 0.768 3.232 18 H -0.209 1.209 19 H -0.208 1.208 20 H -0.188 1.188 21 C -0.043 4.043 22 C -0.128 4.128 23 C -0.154 4.154 24 C -0.160 4.160 25 C -0.147 4.147 26 C -0.159 4.159 27 C -0.025 4.025 28 N -0.260 5.260 29 H 0.144 0.856 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.185 0.815 33 H 0.159 0.841 34 H 0.078 0.922 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.159 0.841 42 H 0.129 0.871 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.657 -10.959 -1.137 11.609 hybrid contribution -0.121 1.289 -0.094 1.298 sum -3.778 -9.670 -1.232 10.454 Atomic orbital electron populations 1.23076 0.75843 1.04767 1.02200 1.86231 1.24357 1.23650 1.87922 1.20044 0.89871 0.84976 0.93061 1.21155 0.91865 0.99355 1.06912 1.21643 1.00975 0.90839 0.93044 1.18726 0.93001 0.86228 1.06119 1.45277 1.51491 1.13170 1.19184 1.21801 1.03610 0.92779 0.85634 1.21822 0.75934 0.90305 0.79897 1.90574 1.59599 1.57076 1.38708 1.18012 0.96527 0.87836 0.93857 0.90441 1.20531 0.96948 1.01574 1.35563 0.93408 1.25349 0.97390 0.98997 0.93719 1.69926 1.27170 1.24454 1.32117 0.85860 0.80459 0.79046 0.77878 1.20949 1.20821 1.18800 1.20157 0.93463 0.95022 0.95648 1.20832 0.98874 1.00106 0.92975 1.21318 0.95318 1.01013 0.97796 1.21273 0.94370 1.02001 0.98382 1.21313 1.00467 1.00638 0.92246 1.21158 0.93903 1.02154 0.98695 1.22612 0.91669 0.94246 0.93935 1.67314 1.40541 0.98471 1.19671 0.85554 0.92942 0.92346 0.81463 0.84097 0.92161 0.90742 0.90281 0.92217 0.88975 0.84920 0.83614 0.84147 0.87144 0.81467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 10.38 113.37 1.18 1.83 16 2 O -0.31 -7.82 10.48 -90.68 -0.95 -8.77 16 3 C 0.30 8.61 7.49 84.80 0.63 9.24 16 4 C -0.17 -4.68 10.03 22.45 0.23 -4.46 16 5 C -0.04 -1.19 9.37 22.56 0.21 -0.98 16 6 C 0.05 1.81 4.91 38.18 0.19 2.00 16 7 N -0.56 -21.41 2.95 -654.08 -1.93 -23.34 16 8 C 0.10 3.53 9.06 127.77 1.16 4.68 16 9 C 0.53 23.75 6.81 87.66 0.60 24.34 16 10 O -0.58 -28.54 14.89 -3.08 -0.05 -28.59 16 11 C 0.06 2.77 1.66 -13.03 -0.02 2.75 16 12 H 0.08 3.87 6.09 -2.39 -0.01 3.86 16 13 C -0.51 -24.75 5.85 25.60 0.15 -24.60 16 14 H 0.05 2.41 7.82 -2.91 -0.02 2.38 16 15 C 0.05 2.33 5.45 84.65 0.46 2.79 16 16 N -0.90 -45.20 12.77 21.44 0.27 -44.92 16 17 Si 0.94 39.45 29.54 68.60 2.03 41.48 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 21 C -0.04 -1.96 4.31 -19.87 -0.09 -2.04 16 22 C -0.11 -4.93 8.27 22.27 0.18 -4.75 16 23 C -0.14 -5.14 10.05 22.27 0.22 -4.92 16 24 C -0.14 -4.80 10.05 22.27 0.22 -4.58 16 25 C -0.13 -4.60 10.05 22.27 0.22 -4.38 16 26 C -0.14 -6.01 9.67 22.27 0.22 -5.79 16 27 C 0.13 4.22 10.97 84.78 0.93 5.15 16 28 N -0.54 -16.38 9.20 -308.45 -2.84 -19.22 16 29 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 31 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 32 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 33 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.06 2.09 7.82 -2.39 -0.02 2.07 16 35 H 0.07 2.87 6.36 -2.38 -0.02 2.86 16 36 H 0.08 2.18 8.05 -2.39 -0.02 2.16 16 37 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 38 H 0.09 4.35 7.91 -2.91 -0.02 4.32 16 39 H 0.13 4.17 8.06 -2.91 -0.02 4.14 16 40 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16 41 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 42 H 0.11 4.60 7.95 -2.91 -0.02 4.58 16 43 H 0.17 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -61.15 368.55 4.24 -56.90 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 1.01 Total: 30.17 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 6.70 Total: -3.70 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -4.50 Total: -87.49 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -1.00 Total: -37.37 kcal Atomic # 14 Polarization: 39.45 SS G_CDS: 2.03 Total: 41.48 kcal Total: -61.15 4.24 -56.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433193101.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.634 kcal (2) G-P(sol) polarization free energy of solvation -61.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds