Wall clock time and date at job start Tue Mar 31 2020 14:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35752 * 116.99922 * 2 1 4 4 C 1.38909 * 119.60535 * 180.02562 * 3 2 1 5 5 C 1.38321 * 119.18264 * 179.97438 * 4 3 2 6 6 C 1.39378 * 118.42524 * 0.02562 * 5 4 3 7 7 N 1.40139 * 120.42260 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00155 * 245.55061 * 7 6 5 9 9 C 1.34774 * 120.00164 * 65.55167 * 7 6 5 10 10 O 1.21296 * 119.99847 * 4.09413 * 9 7 6 11 11 C 1.50696 * 120.00382 * 184.09296 * 9 7 6 12 12 H 1.09000 * 109.47374 * 60.00044 * 11 9 7 13 13 C 1.50700 * 109.47361 * 300.00167 * 11 9 7 14 14 H 1.08003 * 119.99515 * 334.82277 * 13 11 9 15 15 C 1.37881 * 120.00243 * 154.82114 * 13 11 9 16 16 N 1.31510 * 120.00208 * 4.77096 * 15 13 11 17 17 Si 1.86801 * 119.99867 * 185.04653 * 15 13 11 18 18 H 1.48492 * 109.47325 * 179.72374 * 17 15 13 19 19 H 1.48504 * 109.47030 * 299.72816 * 17 15 13 20 20 H 1.48503 * 109.47199 * 59.72404 * 17 15 13 21 21 C 1.50697 * 109.47550 * 180.02562 * 11 9 7 22 22 C 1.38238 * 120.00166 * 56.15534 * 21 11 9 23 23 C 1.38232 * 120.00022 * 179.78872 * 22 21 11 24 24 C 1.38237 * 120.00087 * 0.44467 * 23 22 21 25 25 C 1.38230 * 119.99763 * 359.81144 * 24 23 22 26 26 C 1.38226 * 120.00507 * 359.97438 * 25 24 23 27 27 C 1.38653 * 119.15212 * 0.24361 * 6 5 4 28 28 N 1.31950 * 120.73403 * 359.46010 * 27 6 5 29 29 H 1.09004 * 109.47067 * 59.99427 * 1 2 3 30 30 H 1.08996 * 109.47107 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46340 * 299.99668 * 1 2 3 32 32 H 1.08005 * 120.41202 * 0.02806 * 4 3 2 33 33 H 1.08004 * 120.78742 * 179.97438 * 5 4 3 34 34 H 1.08992 * 109.47553 * 270.00285 * 8 7 6 35 35 H 1.09002 * 109.46976 * 30.00062 * 8 7 6 36 36 H 1.09000 * 109.47360 * 150.00062 * 8 7 6 37 37 H 0.97004 * 119.99653 * 355.23198 * 16 15 13 38 38 H 1.08001 * 119.99354 * 0.02562 * 22 21 11 39 39 H 1.08001 * 120.00068 * 180.27585 * 23 22 21 40 40 H 1.08001 * 119.99685 * 179.82859 * 24 23 22 41 41 H 1.08005 * 119.99762 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.00393 * 180.02562 * 26 25 24 43 43 H 1.07995 * 119.63142 * 179.72629 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.4330 1.2727 -0.0005 5 6 4.0518 2.5098 -0.0011 6 6 3.2524 3.6515 -0.0005 7 7 3.8354 4.9259 -0.0005 8 6 3.6630 5.8103 1.1547 9 6 4.5545 5.3381 -1.0632 10 8 4.6356 4.6367 -2.0495 11 6 5.2579 6.6703 -1.0262 12 1 5.9735 6.6807 -0.2041 13 6 4.2450 7.7677 -0.8244 14 1 3.2195 7.6185 -1.1283 15 6 4.6276 8.9623 -0.2518 16 7 5.8931 9.1799 0.0321 17 14 3.3473 10.2685 0.1278 18 1 4.0096 11.4472 0.7416 19 1 2.6714 10.6791 -1.1292 20 1 2.3429 9.7173 1.0726 21 6 5.9844 6.8912 -2.3279 22 6 5.2921 6.8395 -3.5233 23 6 5.9577 7.0465 -4.7170 24 6 7.3174 7.2959 -4.7160 25 6 8.0106 7.3423 -3.5210 26 6 7.3443 7.1398 -2.3270 27 6 1.8731 3.5103 0.0057 28 7 1.3178 2.3134 0.0004 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 4.0215 0.3671 -0.0014 33 1 5.1290 2.5891 -0.0011 34 1 2.7694 6.4187 1.0164 35 1 3.5578 5.2106 2.0588 36 1 4.5336 6.4594 1.2485 37 1 6.5472 8.4752 -0.0967 38 1 4.2304 6.6413 -3.5242 39 1 5.4160 7.0105 -5.6506 40 1 7.8378 7.4549 -5.6489 41 1 9.0729 7.5377 -3.5202 42 1 7.8859 7.1765 -1.3933 43 1 1.2464 4.3898 0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433193105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:39 Heat of formation + Delta-G solvation = -2.758649 kcal Electronic energy + Delta-G solvation = -27477.856130 eV Core-core repulsion = 23681.787692 eV Total energy + Delta-G solvation = -3796.068438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.78102 -39.57926 -38.27845 -37.42379 -34.99545 -34.11139 -32.31272 -30.95849 -30.06214 -29.94621 -27.58310 -26.95251 -26.17027 -23.88016 -23.34994 -22.88906 -21.70621 -20.85036 -19.10390 -18.41135 -17.45553 -17.14039 -16.58448 -16.05806 -15.93631 -15.68881 -14.71666 -14.55420 -14.39115 -14.24639 -13.90496 -13.80435 -13.42337 -13.31498 -13.05753 -12.76731 -12.54270 -12.42642 -12.26527 -12.15618 -11.92991 -11.72168 -11.58470 -11.20663 -10.98280 -10.91080 -10.35866 -10.27241 -10.18381 -9.93093 -9.80965 -9.13736 -9.00183 -8.74253 -8.63967 -8.05315 -7.91059 -7.69877 -6.63319 -4.38493 1.16067 1.30441 2.24945 2.29094 3.03652 3.28778 3.30278 3.38209 3.48809 3.50785 3.80303 4.33220 4.35064 4.69731 4.96693 5.06231 5.09898 5.13270 5.21528 5.22146 5.47068 5.60999 5.61416 5.64351 5.68811 5.74444 5.84353 5.87146 6.00705 6.08060 6.24412 6.31765 6.37402 6.40743 6.48776 6.56085 6.81391 6.92320 7.05861 7.25133 7.28000 7.34336 7.53939 7.72217 7.77564 7.86000 7.93913 8.11691 8.52244 8.89812 9.30272 10.74607 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004030 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.039518 B = 6945.977559 C = 8398.221220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.311 6.311 3 C 0.304 3.696 4 C -0.177 4.177 5 C -0.036 4.036 6 C 0.078 3.922 7 N -0.571 5.571 8 C 0.099 3.901 9 C 0.535 3.465 10 O -0.547 6.547 11 C 0.049 3.951 12 H 0.066 0.934 13 C -0.590 4.590 14 H 0.058 0.942 15 C 0.034 3.966 16 N -0.891 5.891 17 Si 1.065 2.935 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.284 1.284 21 C -0.024 4.024 22 C -0.078 4.078 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.129 4.129 26 C -0.123 4.123 27 C 0.135 3.865 28 N -0.530 5.530 29 H 0.057 0.943 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.142 0.858 33 H 0.140 0.860 34 H 0.063 0.937 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.273 0.727 38 H 0.110 0.890 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.110 0.890 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.545 -10.489 2.160 11.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.218 6.218 3 C 0.125 3.875 4 C -0.198 4.198 5 C -0.063 4.063 6 C -0.016 4.016 7 N -0.301 5.301 8 C -0.043 4.043 9 C 0.327 3.673 10 O -0.424 6.424 11 C 0.028 3.972 12 H 0.084 0.916 13 C -0.627 4.627 14 H 0.077 0.923 15 C -0.173 4.173 16 N -0.525 5.525 17 Si 0.892 3.108 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.210 1.210 21 C -0.025 4.025 22 C -0.096 4.096 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.147 4.147 26 C -0.141 4.141 27 C -0.023 4.023 28 N -0.253 5.253 29 H 0.076 0.924 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.158 0.842 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.128 0.872 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -5.461 -9.618 2.214 11.280 hybrid contribution 0.784 -1.185 -0.670 1.571 sum -4.678 -10.803 1.544 11.873 Atomic orbital electron populations 1.22815 0.77529 1.02598 1.02463 1.86227 1.22687 1.24634 1.88301 1.19775 0.89349 0.84627 0.93711 1.20909 0.91820 0.98974 1.08102 1.21544 1.00798 0.90624 0.93373 1.18535 0.92376 0.86550 1.04145 1.45403 1.52509 1.12708 1.19490 1.21869 1.04683 0.92820 0.84908 1.21615 0.76840 0.88199 0.80625 1.90629 1.62307 1.57414 1.32002 1.18151 0.95901 0.90265 0.92883 0.91619 1.21499 0.95156 1.00387 1.45669 0.92347 1.25806 0.99537 0.98717 0.93277 1.70810 1.01348 1.35302 1.45004 0.83578 0.74440 0.75960 0.76828 1.20579 1.21261 1.20982 1.20056 0.92382 0.94446 0.95647 1.20763 0.99430 0.97661 0.91722 1.20972 0.94605 1.01936 0.97598 1.20827 0.94602 1.03715 0.97219 1.20886 0.98926 1.02025 0.92872 1.20923 0.94203 1.01622 0.97343 1.22538 0.91989 0.93721 0.94009 1.67278 1.40401 0.98427 1.19213 0.92378 0.88895 0.92392 0.84062 0.84245 0.91877 0.93241 0.88798 0.91485 0.87186 0.87451 0.87516 0.87361 0.87178 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.31 -4.09 10.48 -18.96 -0.20 -4.29 16 3 C 0.30 4.48 7.49 -17.14 -0.13 4.35 16 4 C -0.18 -2.47 10.03 -39.30 -0.39 -2.86 16 5 C -0.04 -0.56 9.58 -39.13 -0.37 -0.93 16 6 C 0.08 1.31 4.82 -83.48 -0.40 0.90 16 7 N -0.57 -10.41 2.96 -120.68 -0.36 -10.77 16 8 C 0.10 1.61 9.03 59.85 0.54 2.15 16 9 C 0.54 11.50 6.75 -10.99 -0.07 11.43 16 10 O -0.55 -12.96 14.49 5.54 0.08 -12.88 16 11 C 0.05 1.11 1.18 -94.08 -0.11 1.00 16 12 H 0.07 1.51 6.04 -51.93 -0.31 1.20 16 13 C -0.59 -13.98 5.61 -34.44 -0.19 -14.17 16 14 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 15 C 0.03 0.83 5.45 -17.82 -0.10 0.74 16 16 N -0.89 -23.27 13.63 55.43 0.76 -22.51 16 17 Si 1.06 22.27 29.91 -169.99 -5.08 17.19 16 18 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 19 H -0.29 -5.98 7.11 56.52 0.40 -5.58 16 20 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 21 C -0.02 -0.55 4.37 -104.62 -0.46 -1.01 16 22 C -0.08 -1.74 8.02 -39.58 -0.32 -2.06 16 23 C -0.13 -2.63 10.05 -39.58 -0.40 -3.03 16 24 C -0.15 -2.69 10.05 -39.58 -0.40 -3.09 16 25 C -0.13 -2.46 10.05 -39.59 -0.40 -2.86 16 26 C -0.12 -2.61 9.07 -39.58 -0.36 -2.97 16 27 C 0.13 2.11 10.98 -17.35 -0.19 1.92 16 28 N -0.53 -8.14 9.20 -13.18 -0.12 -8.26 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.57 8.10 -51.93 -0.42 0.14 16 32 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 33 H 0.14 2.06 8.06 -52.48 -0.42 1.63 16 34 H 0.06 1.03 7.95 -51.93 -0.41 0.61 16 35 H 0.05 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.09 1.70 5.97 -51.93 -0.31 1.39 16 37 H 0.27 7.03 5.72 -40.82 -0.23 6.80 16 38 H 0.11 2.55 7.72 -52.49 -0.41 2.14 16 39 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 1.75 8.06 -52.48 -0.42 1.32 16 42 H 0.11 2.23 7.61 -52.48 -0.40 1.84 16 43 H 0.16 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -29.31 364.45 -7.64 -36.95 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -5.50 Total: 8.13 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -2.70 Total: -9.03 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: 0.28 Total: -41.54 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: -0.12 Total: -17.18 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.08 Total: 17.19 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.31 -7.64 -36.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433193105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.187 kcal (2) G-P(sol) polarization free energy of solvation -29.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds