Wall clock time and date at job start Tue Mar 31 2020 14:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35752 * 116.99922 * 2 1 4 4 C 1.38909 * 119.60535 * 180.02562 * 3 2 1 5 5 C 1.38321 * 119.18264 * 179.97438 * 4 3 2 6 6 C 1.39378 * 118.42524 * 0.02562 * 5 4 3 7 7 N 1.40139 * 120.42260 * 179.97438 * 6 5 4 8 8 C 1.46499 * 120.00155 * 245.55061 * 7 6 5 9 9 C 1.34774 * 120.00164 * 65.55167 * 7 6 5 10 10 O 1.21296 * 119.99847 * 4.09413 * 9 7 6 11 11 C 1.50696 * 120.00382 * 184.09296 * 9 7 6 12 12 H 1.09000 * 109.47374 * 60.00044 * 11 9 7 13 13 C 1.50700 * 109.47361 * 300.00167 * 11 9 7 14 14 H 1.08003 * 119.99515 * 334.82277 * 13 11 9 15 15 C 1.37881 * 120.00243 * 154.82114 * 13 11 9 16 16 N 1.31510 * 120.00208 * 4.77096 * 15 13 11 17 17 Si 1.86801 * 119.99867 * 185.04653 * 15 13 11 18 18 H 1.48492 * 109.47325 * 179.72374 * 17 15 13 19 19 H 1.48504 * 109.47030 * 299.72816 * 17 15 13 20 20 H 1.48503 * 109.47199 * 59.72404 * 17 15 13 21 21 C 1.50697 * 109.47550 * 180.02562 * 11 9 7 22 22 C 1.38238 * 120.00166 * 56.15534 * 21 11 9 23 23 C 1.38232 * 120.00022 * 179.78872 * 22 21 11 24 24 C 1.38237 * 120.00087 * 0.44467 * 23 22 21 25 25 C 1.38230 * 119.99763 * 359.81144 * 24 23 22 26 26 C 1.38226 * 120.00507 * 359.97438 * 25 24 23 27 27 C 1.38653 * 119.15212 * 0.24361 * 6 5 4 28 28 N 1.31950 * 120.73403 * 359.46010 * 27 6 5 29 29 H 1.09004 * 109.47067 * 59.99427 * 1 2 3 30 30 H 1.08996 * 109.47107 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46340 * 299.99668 * 1 2 3 32 32 H 1.08005 * 120.41202 * 0.02806 * 4 3 2 33 33 H 1.08004 * 120.78742 * 179.97438 * 5 4 3 34 34 H 1.08992 * 109.47553 * 270.00285 * 8 7 6 35 35 H 1.09002 * 109.46976 * 30.00062 * 8 7 6 36 36 H 1.09000 * 109.47360 * 150.00062 * 8 7 6 37 37 H 0.97004 * 119.99653 * 355.23198 * 16 15 13 38 38 H 1.08001 * 119.99354 * 0.02562 * 22 21 11 39 39 H 1.08001 * 120.00068 * 180.27585 * 23 22 21 40 40 H 1.08001 * 119.99685 * 179.82859 * 24 23 22 41 41 H 1.08005 * 119.99762 * 180.02562 * 25 24 23 42 42 H 1.08003 * 120.00393 * 180.02562 * 26 25 24 43 43 H 1.07995 * 119.63142 * 179.72629 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0454 1.2096 0.0000 4 6 3.4330 1.2727 -0.0005 5 6 4.0518 2.5098 -0.0011 6 6 3.2524 3.6515 -0.0005 7 7 3.8354 4.9259 -0.0005 8 6 3.6630 5.8103 1.1547 9 6 4.5545 5.3381 -1.0632 10 8 4.6356 4.6367 -2.0495 11 6 5.2579 6.6703 -1.0262 12 1 5.9735 6.6807 -0.2041 13 6 4.2450 7.7677 -0.8244 14 1 3.2195 7.6185 -1.1283 15 6 4.6276 8.9623 -0.2518 16 7 5.8931 9.1799 0.0321 17 14 3.3473 10.2685 0.1278 18 1 4.0096 11.4472 0.7416 19 1 2.6714 10.6791 -1.1292 20 1 2.3429 9.7173 1.0726 21 6 5.9844 6.8912 -2.3279 22 6 5.2921 6.8395 -3.5233 23 6 5.9577 7.0465 -4.7170 24 6 7.3174 7.2959 -4.7160 25 6 8.0106 7.3423 -3.5210 26 6 7.3443 7.1398 -2.3270 27 6 1.8731 3.5103 0.0057 28 7 1.3178 2.3134 0.0004 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 4.0215 0.3671 -0.0014 33 1 5.1290 2.5891 -0.0011 34 1 2.7694 6.4187 1.0164 35 1 3.5578 5.2106 2.0588 36 1 4.5336 6.4594 1.2485 37 1 6.5472 8.4752 -0.0967 38 1 4.2304 6.6413 -3.5242 39 1 5.4160 7.0105 -5.6506 40 1 7.8378 7.4549 -5.6489 41 1 9.0729 7.5377 -3.5202 42 1 7.8859 7.1765 -1.3933 43 1 1.2464 4.3898 0.0107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433193105.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:38 Heat of formation + Delta-G solvation = -19.236942 kcal Electronic energy + Delta-G solvation = -27478.570683 eV Core-core repulsion = 23681.787692 eV Total energy + Delta-G solvation = -3796.782991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.05603 -41.04359 -39.70000 -38.71117 -36.53188 -35.83597 -33.50967 -32.67162 -31.63978 -31.19799 -28.99815 -28.12123 -27.58619 -25.63203 -24.54240 -24.23077 -23.29942 -22.36209 -20.67516 -19.49074 -19.19123 -18.36027 -18.10084 -17.49970 -17.31617 -16.99421 -16.27831 -15.90049 -15.65827 -15.61754 -15.56600 -15.14545 -14.89746 -14.54191 -14.36029 -14.24103 -14.08347 -13.92895 -13.77558 -13.68817 -13.24992 -13.11437 -12.77247 -12.74359 -12.54960 -12.18514 -11.95908 -11.90810 -11.78240 -11.17024 -11.02562 -10.92667 -10.67614 -10.51239 -10.04191 -9.65040 -9.34366 -9.22960 -8.57071 -6.31798 -0.03776 0.09560 0.65290 0.70223 1.59328 1.63987 1.70441 1.84144 1.93048 2.15664 2.58501 2.61035 3.07338 3.22066 3.24739 3.76104 3.92394 3.98292 4.06537 4.18758 4.20474 4.30434 4.34518 4.37608 4.42840 4.45117 4.56938 4.61102 4.64019 4.75775 4.76832 4.83346 4.89718 5.01897 5.10040 5.19798 5.24878 5.31057 5.67318 5.70341 5.75392 5.79523 6.02325 6.12742 6.17194 6.26252 6.32725 6.59410 6.66254 7.26559 7.42559 8.81610 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012519 B = 0.004030 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2236.039518 B = 6945.977559 C = 8398.221220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.314 6.314 3 C 0.301 3.699 4 C -0.171 4.171 5 C -0.041 4.041 6 C 0.052 3.948 7 N -0.563 5.563 8 C 0.101 3.899 9 C 0.533 3.467 10 O -0.575 6.575 11 C 0.051 3.949 12 H 0.053 0.947 13 C -0.580 4.580 14 H 0.047 0.953 15 C -0.001 4.001 16 N -0.918 5.918 17 Si 1.100 2.900 18 H -0.288 1.288 19 H -0.286 1.286 20 H -0.258 1.258 21 C -0.050 4.050 22 C -0.104 4.104 23 C -0.136 4.136 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.143 4.143 27 C 0.135 3.865 28 N -0.535 5.535 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.059 0.941 32 H 0.169 0.831 33 H 0.141 0.859 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.266 0.734 38 H 0.090 0.910 39 H 0.134 0.866 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.108 0.892 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.957 -11.442 1.699 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.221 6.221 3 C 0.122 3.878 4 C -0.192 4.192 5 C -0.068 4.068 6 C -0.042 4.042 7 N -0.292 5.292 8 C -0.040 4.040 9 C 0.325 3.675 10 O -0.454 6.454 11 C 0.030 3.970 12 H 0.071 0.929 13 C -0.617 4.617 14 H 0.065 0.935 15 C -0.203 4.203 16 N -0.553 5.553 17 Si 0.924 3.076 18 H -0.214 1.214 19 H -0.212 1.212 20 H -0.182 1.182 21 C -0.051 4.051 22 C -0.122 4.122 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.146 4.146 26 C -0.161 4.161 27 C -0.022 4.022 28 N -0.259 5.259 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.159 0.841 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.152 0.848 40 H 0.166 0.834 41 H 0.159 0.841 42 H 0.127 0.873 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -5.904 -10.607 1.785 12.270 hybrid contribution 0.887 -1.033 -0.567 1.475 sum -5.017 -11.640 1.218 12.734 Atomic orbital electron populations 1.23090 0.75761 1.04821 1.02242 1.86238 1.24426 1.23596 1.87849 1.20052 0.89865 0.85005 0.92861 1.21151 0.91909 0.99316 1.06787 1.21640 1.00945 0.90908 0.93338 1.18699 0.93090 0.86002 1.06368 1.45273 1.51458 1.13549 1.18880 1.21879 1.03593 0.92963 0.85557 1.21417 0.77255 0.87744 0.81078 1.90591 1.63627 1.57999 1.33187 1.18054 0.95536 0.90667 0.92719 0.92926 1.21496 0.94755 1.00708 1.44788 0.93491 1.26807 1.00137 1.00436 0.92940 1.70884 1.02037 1.35398 1.47030 0.83125 0.73342 0.74028 0.77150 1.21365 1.21196 1.18202 1.20162 0.93368 0.95803 0.95738 1.20761 0.98757 0.99728 0.92974 1.21328 0.95611 1.00843 0.97600 1.21290 0.94075 1.01756 0.98665 1.21311 1.00615 1.00458 0.92203 1.21097 0.93932 1.02555 0.98554 1.22620 0.91601 0.94309 0.93713 1.67319 1.40524 0.98462 1.19594 0.92914 0.85530 0.92267 0.81380 0.84107 0.91777 0.90072 0.90937 0.92284 0.89217 0.84791 0.83403 0.84077 0.87344 0.81346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 10.38 113.37 1.18 1.80 16 2 O -0.31 -7.60 10.48 -90.77 -0.95 -8.55 16 3 C 0.30 8.42 7.49 84.80 0.63 9.05 16 4 C -0.17 -4.51 10.03 22.45 0.23 -4.29 16 5 C -0.04 -1.26 9.58 22.56 0.22 -1.05 16 6 C 0.05 1.73 4.82 38.19 0.18 1.92 16 7 N -0.56 -20.95 2.96 -654.09 -1.93 -22.88 16 8 C 0.10 3.34 9.03 127.77 1.15 4.49 16 9 C 0.53 23.78 6.75 87.66 0.59 24.37 16 10 O -0.57 -28.19 14.49 -3.08 -0.04 -28.23 16 11 C 0.05 2.42 1.18 -13.03 -0.02 2.40 16 12 H 0.05 2.57 6.04 -2.39 -0.01 2.56 16 13 C -0.58 -28.35 5.61 25.60 0.14 -28.20 16 14 H 0.05 2.36 7.81 -2.91 -0.02 2.34 16 15 C 0.00 -0.05 5.45 84.66 0.46 0.42 16 16 N -0.92 -49.18 13.63 21.45 0.29 -48.88 16 17 Si 1.10 45.04 29.91 68.60 2.05 47.09 16 18 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.29 -11.59 7.11 99.48 0.71 -10.89 16 20 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 21 C -0.05 -2.34 4.37 -19.86 -0.09 -2.43 16 22 C -0.10 -4.76 8.02 22.27 0.18 -4.58 16 23 C -0.14 -5.22 10.05 22.27 0.22 -5.00 16 24 C -0.14 -4.82 10.05 22.27 0.22 -4.60 16 25 C -0.13 -4.68 10.05 22.26 0.22 -4.46 16 26 C -0.14 -6.18 9.07 22.27 0.20 -5.98 16 27 C 0.13 4.16 10.98 84.77 0.93 5.09 16 28 N -0.54 -15.88 9.20 -308.45 -2.84 -18.72 16 29 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 30 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.04 8.10 -2.39 -0.02 1.02 16 32 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 33 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 34 H 0.06 2.09 7.95 -2.39 -0.02 2.07 16 35 H 0.08 2.14 8.05 -2.39 -0.02 2.12 16 36 H 0.07 2.72 5.97 -2.39 -0.01 2.71 16 37 H 0.27 14.23 5.72 -92.71 -0.53 13.70 16 38 H 0.09 4.36 7.72 -2.91 -0.02 4.33 16 39 H 0.13 4.30 8.06 -2.91 -0.02 4.28 16 40 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.11 4.57 7.61 -2.91 -0.02 4.55 16 43 H 0.17 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -64.37 364.45 4.50 -59.87 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 1.26 Total: 31.34 kcal Atomic # 6 Polarization: -17.70 SS G_CDS: 6.67 Total: -11.03 kcal Atomic # 7 Polarization: -86.01 SS G_CDS: -4.48 Total: -90.49 kcal Atomic # 8 Polarization: -35.79 SS G_CDS: -1.00 Total: -36.78 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.05 Total: 47.09 kcal Total: -64.37 4.50 -59.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433193105.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.633 kcal (2) G-P(sol) polarization free energy of solvation -64.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds