Wall clock time and date at job start Tue Mar 31 2020 14:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 117.00441 * 2 1 4 4 C 1.39147 * 120.47419 * 0.24722 * 3 2 1 5 5 C 1.38534 * 118.37441 * 180.26790 * 4 3 2 6 6 C 1.38243 * 119.22265 * 359.74963 * 5 4 3 7 7 N 1.31847 * 120.88851 * 359.97438 * 6 5 4 8 8 C 1.31837 * 121.78077 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.66015 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47120 * 89.99787 * 9 8 7 11 11 C 1.34777 * 120.00051 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99353 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.47000 * 180.02562 * 13 11 10 15 15 C 1.37645 * 120.13007 * 265.30719 * 14 13 11 16 16 C 1.38606 * 120.24649 * 180.32491 * 15 14 13 17 17 C 1.38653 * 120.50471 * 359.65965 * 16 15 14 18 18 C 1.37600 * 120.24898 * 0.02562 * 17 16 15 19 19 C 1.40696 * 120.12867 * 84.99790 * 14 13 11 20 20 C 1.41400 * 120.24530 * 359.97438 * 19 14 13 21 21 H 1.08003 * 119.99719 * 25.87056 * 20 19 14 22 22 C 1.39942 * 120.00205 * 205.88123 * 20 19 14 23 23 N 1.30821 * 119.99968 * 16.29869 * 22 20 19 24 24 Si 1.86803 * 120.00009 * 196.30797 * 22 20 19 25 25 H 1.48496 * 109.47194 * 265.18190 * 24 22 20 26 26 H 1.48505 * 109.46937 * 25.18007 * 24 22 20 27 27 H 1.48498 * 109.47234 * 145.18150 * 24 22 20 28 28 H 1.08998 * 109.47708 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47298 * 300.00367 * 1 2 3 30 30 H 1.09008 * 109.47006 * 60.00249 * 1 2 3 31 31 H 1.08006 * 120.80814 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.38865 * 179.73016 * 5 4 3 33 33 H 1.07999 * 119.55660 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47016 * 329.99860 * 9 8 7 35 35 H 1.08997 * 109.47028 * 209.99894 * 9 8 7 36 36 H 0.97002 * 120.00149 * 0.02562 * 10 9 8 37 37 H 1.09000 * 109.47297 * 60.00731 * 13 11 10 38 38 H 1.08997 * 109.47185 * 300.00030 * 13 11 10 39 39 H 1.07994 * 119.87429 * 0.02562 * 15 14 13 40 40 H 1.08002 * 119.74758 * 179.69746 * 16 15 14 41 41 H 1.07998 * 119.87893 * 180.02562 * 17 16 15 42 42 H 1.07997 * 120.12664 * 180.02562 * 18 17 16 43 43 H 0.97002 * 120.00001 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0052 5 6 1.9718 3.5946 -0.0007 6 6 3.3542 3.5974 -0.0062 7 7 4.0334 2.4674 -0.0054 8 6 3.4306 1.2949 0.0002 9 6 4.2542 0.0329 0.0003 10 7 4.5267 -0.3723 1.3815 11 6 5.2514 -1.4816 1.6279 12 8 5.6784 -2.1441 0.7061 13 6 5.5311 -1.8987 3.0487 14 6 6.3548 -3.1607 3.0488 15 6 5.7393 -4.3876 3.1515 16 6 6.4950 -5.5495 3.1586 17 6 7.8765 -5.4911 3.0556 18 6 8.5127 -4.2760 2.9455 19 6 7.7556 -3.0898 2.9374 20 6 8.3985 -1.8354 2.8243 21 1 7.9284 -0.9496 3.2253 22 6 9.6436 -1.7418 2.1925 23 7 10.0683 -2.7206 1.4355 24 14 10.6994 -0.2192 2.4301 25 1 10.4551 0.7315 1.3158 26 1 10.3498 0.4293 3.7195 27 1 12.1326 -0.6078 2.4440 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2184 2.3519 0.0097 32 1 1.4235 4.5251 -0.0014 33 1 3.8850 4.5380 -0.0104 34 1 5.1960 0.2136 -0.5178 35 1 3.7055 -0.7591 -0.5092 36 1 4.1848 0.1573 2.1188 37 1 4.5891 -2.0793 3.5665 38 1 6.0800 -1.1070 3.5584 39 1 4.6639 -4.4448 3.2317 40 1 6.0040 -6.5076 3.2445 41 1 8.4554 -6.4028 3.0618 42 1 9.5888 -4.2329 2.8649 43 1 10.9316 -2.6559 0.9979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433507051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:15 Heat of formation + Delta-G solvation = -17.224197 kcal Electronic energy + Delta-G solvation = -26760.266962 eV Core-core repulsion = 22963.571251 eV Total energy + Delta-G solvation = -3796.695712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.01837 -38.92815 -38.39568 -37.20560 -34.54705 -33.48492 -32.36304 -31.65588 -30.94959 -29.34483 -27.86003 -27.43683 -25.84411 -24.74333 -23.15367 -22.26488 -20.83357 -20.37367 -19.22471 -18.40605 -17.38883 -17.16774 -16.73888 -16.26583 -15.82168 -15.44566 -15.17098 -14.77856 -14.52829 -14.35501 -14.11976 -13.79387 -13.50107 -13.38010 -13.22549 -12.77262 -12.49634 -12.40960 -12.17554 -11.78539 -11.68635 -11.59525 -11.40033 -11.03167 -10.99252 -10.77732 -10.59326 -10.30706 -10.08632 -9.78635 -9.37879 -9.23890 -9.05489 -9.02658 -8.58198 -8.48475 -7.20804 -7.19152 -6.59328 -4.20039 0.76277 0.97833 2.86660 2.90301 3.07257 3.15770 3.19535 3.37027 3.40137 3.60040 3.95955 4.04868 4.20025 4.31688 4.40042 4.66611 4.78130 4.79907 4.80645 4.97331 5.14355 5.25422 5.52611 5.64518 5.70949 5.87554 5.95738 6.01530 6.13163 6.18581 6.30021 6.39281 6.48777 6.62802 6.87285 6.89192 6.95233 7.23232 7.39609 7.53191 7.75414 7.76706 8.01712 8.11019 8.19033 8.23599 8.44032 8.76440 9.03197 9.11058 9.12696 10.35634 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003564 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.381858 B = 7854.892911 C = 9624.971802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.299 6.299 3 C 0.094 3.906 4 C -0.169 4.169 5 C -0.130 4.130 6 C 0.059 3.941 7 N -0.430 5.430 8 C 0.091 3.909 9 C 0.181 3.819 10 N -0.737 5.737 11 C 0.518 3.482 12 O -0.511 6.511 13 C -0.067 4.067 14 C -0.180 4.180 15 C -0.080 4.080 16 C -0.243 4.243 17 C -0.106 4.106 18 C -0.163 4.163 19 C 0.131 3.869 20 C -0.459 4.459 21 H 0.075 0.925 22 C 0.079 3.921 23 N -0.790 5.790 24 Si 0.901 3.099 25 H -0.271 1.271 26 H -0.261 1.261 27 H -0.276 1.276 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.160 0.840 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.393 0.607 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.116 0.884 43 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.868 12.344 -1.545 21.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.211 6.211 3 C 0.046 3.954 4 C -0.196 4.196 5 C -0.150 4.150 6 C -0.098 4.098 7 N -0.140 5.140 8 C -0.049 4.049 9 C 0.057 3.943 10 N -0.392 5.392 11 C 0.305 3.695 12 O -0.384 6.384 13 C -0.107 4.107 14 C -0.182 4.182 15 C -0.099 4.099 16 C -0.262 4.262 17 C -0.124 4.124 18 C -0.182 4.182 19 C 0.128 3.872 20 C -0.489 4.489 21 H 0.093 0.907 22 C -0.139 4.139 23 N -0.415 5.415 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.185 1.185 27 H -0.201 1.201 28 H 0.123 0.877 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.158 0.842 32 H 0.156 0.844 33 H 0.177 0.823 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.225 0.775 37 H 0.091 0.909 38 H 0.109 0.891 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.134 0.866 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.347 11.575 -2.413 20.175 hybrid contribution -0.955 1.256 0.168 1.587 sum -17.303 12.831 -2.245 21.658 Atomic orbital electron populations 1.23142 0.78190 1.04567 1.01183 1.86223 1.21422 1.25518 1.87894 1.19985 0.93164 0.85321 0.96970 1.21709 1.00799 0.92102 1.04978 1.22024 0.95784 0.98240 0.98970 1.22710 0.91408 0.96524 0.99148 1.67619 1.39975 0.97472 1.08894 1.20858 0.88177 0.94371 1.01510 1.19836 0.98626 0.90163 0.85675 1.46015 1.57548 1.28857 1.06781 1.21063 0.76505 0.79195 0.92706 1.90708 1.48660 1.52737 1.46284 1.20236 0.99429 0.98741 0.92296 1.18989 0.93387 0.91426 1.14427 1.20282 0.96590 0.92716 1.00269 1.20277 0.94064 0.95932 1.15968 1.20662 0.94133 0.96655 1.00973 1.21271 0.99663 0.91509 1.05771 1.17326 0.89778 0.93272 0.86796 1.19459 1.01993 0.94512 1.32906 0.90713 1.25829 0.97748 0.97387 0.92892 1.69845 1.18931 1.32078 1.20665 0.86425 0.79194 0.82052 0.79809 1.19630 1.18500 1.20140 0.87710 0.92538 0.92618 0.84235 0.84448 0.82290 0.89962 0.89979 0.77482 0.90875 0.89077 0.89818 0.89776 0.89691 0.86620 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 101.05 0.99 1.15 16 2 O -0.30 -3.34 9.54 -19.44 -0.19 -3.53 16 3 C 0.09 1.08 6.67 -39.07 -0.26 0.81 16 4 C -0.17 -1.44 9.14 -39.14 -0.36 -1.80 16 5 C -0.13 -1.02 10.11 -39.47 -0.40 -1.42 16 6 C 0.06 0.59 11.18 -17.54 -0.20 0.40 16 7 N -0.43 -5.84 10.27 -9.36 -0.10 -5.93 16 8 C 0.09 1.24 6.16 -82.41 -0.51 0.73 16 9 C 0.18 2.96 5.75 -5.19 -0.03 2.93 16 10 N -0.74 -12.53 5.55 -61.47 -0.34 -12.87 16 11 C 0.52 11.10 7.82 -10.99 -0.09 11.02 16 12 O -0.51 -13.53 16.03 5.56 0.09 -13.44 16 13 C -0.07 -1.38 5.35 -29.04 -0.16 -1.54 16 14 C -0.18 -4.50 4.43 -103.91 -0.46 -4.96 16 15 C -0.08 -1.92 9.66 -39.66 -0.38 -2.30 16 16 C -0.24 -5.84 10.05 -39.29 -0.39 -6.24 16 17 C -0.11 -2.66 10.02 -39.66 -0.40 -3.06 16 18 C -0.16 -4.47 8.68 -38.87 -0.34 -4.81 16 19 C 0.13 3.60 5.56 -106.82 -0.59 3.01 16 20 C -0.46 -12.48 8.46 -37.74 -0.32 -12.80 16 21 H 0.07 1.92 6.36 -52.48 -0.33 1.59 16 22 C 0.08 2.09 5.16 -17.34 -0.09 2.00 16 23 N -0.79 -21.76 10.98 55.55 0.61 -21.16 16 24 Si 0.90 19.65 29.59 -169.99 -5.03 14.62 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 27 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.29 7.69 -51.93 -0.40 -0.11 16 30 H 0.06 0.28 7.71 -51.92 -0.40 -0.12 16 31 H 0.14 0.79 6.45 -52.48 -0.34 0.45 16 32 H 0.14 0.64 8.06 -52.48 -0.42 0.21 16 33 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 35 H 0.08 1.37 7.51 -51.93 -0.39 0.98 16 36 H 0.39 5.61 8.46 -40.82 -0.35 5.27 16 37 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 38 H 0.09 1.80 6.48 -51.93 -0.34 1.46 16 39 H 0.08 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 41 H 0.08 1.91 8.06 -52.49 -0.42 1.49 16 42 H 0.12 3.26 6.23 -52.49 -0.33 2.93 16 43 H 0.28 6.99 8.30 -40.82 -0.34 6.65 16 LS Contribution 367.14 15.07 5.53 5.53 Total: -1.00 -34.71 367.14 -8.78 -43.49 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: -5.38 Total: 10.15 kcal Atomic # 6 Polarization: -12.90 SS G_CDS: -3.98 Total: -16.87 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.17 Total: -39.96 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: -0.10 Total: -16.97 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.71 -8.78 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433507051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.268 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds