Wall clock time and date at job start Tue Mar 31 2020 14:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35905 * 117.00441 * 2 1 4 4 C 1.39147 * 120.47419 * 0.24722 * 3 2 1 5 5 C 1.38534 * 118.37441 * 180.26790 * 4 3 2 6 6 C 1.38243 * 119.22265 * 359.74963 * 5 4 3 7 7 N 1.31847 * 120.88851 * 359.97438 * 6 5 4 8 8 C 1.31837 * 121.78077 * 0.02562 * 7 6 5 9 9 C 1.50703 * 119.66015 * 179.97438 * 8 7 6 10 10 N 1.46503 * 109.47120 * 89.99787 * 9 8 7 11 11 C 1.34777 * 120.00051 * 179.97438 * 10 9 8 12 12 O 1.21283 * 119.99353 * 0.02562 * 11 10 9 13 13 C 1.50692 * 119.99931 * 180.02562 * 11 10 9 14 14 C 1.50703 * 109.47000 * 180.02562 * 13 11 10 15 15 C 1.37645 * 120.13007 * 265.30719 * 14 13 11 16 16 C 1.38606 * 120.24649 * 180.32491 * 15 14 13 17 17 C 1.38653 * 120.50471 * 359.65965 * 16 15 14 18 18 C 1.37600 * 120.24898 * 0.02562 * 17 16 15 19 19 C 1.40696 * 120.12867 * 84.99790 * 14 13 11 20 20 C 1.41400 * 120.24530 * 359.97438 * 19 14 13 21 21 H 1.08003 * 119.99719 * 25.87056 * 20 19 14 22 22 C 1.39942 * 120.00205 * 205.88123 * 20 19 14 23 23 N 1.30821 * 119.99968 * 16.29869 * 22 20 19 24 24 Si 1.86803 * 120.00009 * 196.30797 * 22 20 19 25 25 H 1.48496 * 109.47194 * 265.18190 * 24 22 20 26 26 H 1.48505 * 109.46937 * 25.18007 * 24 22 20 27 27 H 1.48498 * 109.47234 * 145.18150 * 24 22 20 28 28 H 1.08998 * 109.47708 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47298 * 300.00367 * 1 2 3 30 30 H 1.09008 * 109.47006 * 60.00249 * 1 2 3 31 31 H 1.08006 * 120.80814 * 0.02562 * 4 3 2 32 32 H 1.08003 * 120.38865 * 179.73016 * 5 4 3 33 33 H 1.07999 * 119.55660 * 180.02562 * 6 5 4 34 34 H 1.08994 * 109.47016 * 329.99860 * 9 8 7 35 35 H 1.08997 * 109.47028 * 209.99894 * 9 8 7 36 36 H 0.97002 * 120.00149 * 0.02562 * 10 9 8 37 37 H 1.09000 * 109.47297 * 60.00731 * 13 11 10 38 38 H 1.08997 * 109.47185 * 300.00030 * 13 11 10 39 39 H 1.07994 * 119.87429 * 0.02562 * 15 14 13 40 40 H 1.08002 * 119.74758 * 179.69746 * 16 15 14 41 41 H 1.07998 * 119.87893 * 180.02562 * 17 16 15 42 42 H 1.07997 * 120.12664 * 180.02562 * 18 17 16 43 43 H 0.97002 * 120.00001 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2980 2.3841 0.0052 5 6 1.9718 3.5946 -0.0007 6 6 3.3542 3.5974 -0.0062 7 7 4.0334 2.4674 -0.0054 8 6 3.4306 1.2949 0.0002 9 6 4.2542 0.0329 0.0003 10 7 4.5267 -0.3723 1.3815 11 6 5.2514 -1.4816 1.6279 12 8 5.6784 -2.1441 0.7061 13 6 5.5311 -1.8987 3.0487 14 6 6.3548 -3.1607 3.0488 15 6 5.7393 -4.3876 3.1515 16 6 6.4950 -5.5495 3.1586 17 6 7.8765 -5.4911 3.0556 18 6 8.5127 -4.2760 2.9455 19 6 7.7556 -3.0898 2.9374 20 6 8.3985 -1.8354 2.8243 21 1 7.9284 -0.9496 3.2253 22 6 9.6436 -1.7418 2.1925 23 7 10.0683 -2.7206 1.4355 24 14 10.6994 -0.2192 2.4301 25 1 10.4551 0.7315 1.3158 26 1 10.3498 0.4293 3.7195 27 1 12.1326 -0.6078 2.4440 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 0.2184 2.3519 0.0097 32 1 1.4235 4.5251 -0.0014 33 1 3.8850 4.5380 -0.0104 34 1 5.1960 0.2136 -0.5178 35 1 3.7055 -0.7591 -0.5092 36 1 4.1848 0.1573 2.1188 37 1 4.5891 -2.0793 3.5665 38 1 6.0800 -1.1070 3.5584 39 1 4.6639 -4.4448 3.2317 40 1 6.0040 -6.5076 3.2445 41 1 8.4554 -6.4028 3.0618 42 1 9.5888 -4.2329 2.8649 43 1 10.9316 -2.6559 0.9979 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433507051.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:14 Heat of formation + Delta-G solvation = -40.724762 kcal Electronic energy + Delta-G solvation = -26761.286023 eV Core-core repulsion = 22963.571251 eV Total energy + Delta-G solvation = -3797.714773 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.82875 -40.61737 -39.18637 -39.04280 -35.95343 -35.45821 -33.59185 -33.09249 -31.95138 -31.31812 -29.05195 -28.33342 -27.39922 -26.53959 -23.86932 -23.24408 -22.80368 -22.10205 -20.97827 -19.17279 -19.02948 -18.18629 -18.07873 -17.48213 -17.15187 -16.79125 -16.48191 -16.28939 -16.09028 -15.39538 -15.33687 -15.15800 -14.83832 -14.65458 -14.43995 -14.35235 -14.05376 -13.70839 -13.51849 -13.27870 -13.10579 -12.92744 -12.75404 -12.57653 -12.46388 -12.37012 -12.30342 -12.09495 -11.30317 -11.16229 -11.00024 -10.94469 -10.66228 -10.56437 -10.02617 -9.44818 -9.19904 -9.14585 -8.55772 -6.24778 -0.02085 0.25700 1.02020 1.15298 1.35461 1.48307 1.54795 1.90297 2.21791 2.21852 2.32600 2.80675 2.87891 3.21802 3.56973 3.76831 3.79089 4.05030 4.13332 4.24428 4.33792 4.38690 4.40141 4.44205 4.50433 4.56676 4.63343 4.72041 4.74704 4.78093 4.80661 5.01369 5.04561 5.09497 5.26587 5.38863 5.46290 5.50192 5.57281 5.80810 6.06230 6.16438 6.21795 6.23864 6.46213 6.66955 6.77873 6.97331 7.01552 7.14116 7.48691 8.41936 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012815 B = 0.003564 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.381858 B = 7854.892911 C = 9624.971802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.327 6.327 3 C 0.092 3.908 4 C -0.162 4.162 5 C -0.110 4.110 6 C 0.048 3.952 7 N -0.468 5.468 8 C 0.058 3.942 9 C 0.188 3.812 10 N -0.715 5.715 11 C 0.519 3.481 12 O -0.572 6.572 13 C -0.065 4.065 14 C -0.186 4.186 15 C -0.091 4.091 16 C -0.244 4.244 17 C -0.116 4.116 18 C -0.196 4.196 19 C 0.097 3.903 20 C -0.486 4.486 21 H 0.080 0.920 22 C 0.031 3.969 23 N -0.831 5.831 24 Si 0.973 3.027 25 H -0.272 1.272 26 H -0.249 1.249 27 H -0.266 1.266 28 H 0.112 0.888 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.182 0.818 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.408 0.592 37 H 0.115 0.885 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.116 0.884 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.090 14.787 -0.658 25.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.239 6.239 3 C 0.043 3.957 4 C -0.188 4.188 5 C -0.129 4.129 6 C -0.110 4.110 7 N -0.178 5.178 8 C -0.080 4.080 9 C 0.064 3.936 10 N -0.369 5.369 11 C 0.307 3.693 12 O -0.450 6.450 13 C -0.105 4.105 14 C -0.188 4.188 15 C -0.109 4.109 16 C -0.263 4.263 17 C -0.134 4.134 18 C -0.215 4.215 19 C 0.095 3.905 20 C -0.516 4.516 21 H 0.098 0.902 22 C -0.182 4.182 23 N -0.458 5.458 24 Si 0.794 3.206 25 H -0.198 1.198 26 H -0.172 1.172 27 H -0.191 1.191 28 H 0.130 0.870 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.192 0.808 32 H 0.198 0.802 33 H 0.199 0.801 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.243 0.757 37 H 0.133 0.867 38 H 0.116 0.884 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.123 0.877 42 H 0.114 0.886 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.615 14.035 -1.491 24.165 hybrid contribution -0.167 0.501 -0.129 0.544 sum -19.782 14.536 -1.621 24.601 Atomic orbital electron populations 1.23447 0.75866 1.05773 1.02869 1.86185 1.23929 1.25926 1.87900 1.19975 0.92436 0.86530 0.96799 1.22126 1.02399 0.91011 1.03275 1.22487 0.94958 0.99730 0.95739 1.23227 0.92895 0.96116 0.98731 1.67473 1.41697 0.98392 1.10222 1.20314 0.88997 0.93208 1.05463 1.19641 0.97566 0.91962 0.84462 1.45798 1.55715 1.27406 1.08007 1.21194 0.76128 0.79598 0.92392 1.90684 1.51433 1.54993 1.47904 1.20278 1.00813 0.97167 0.92212 1.19460 0.92997 0.93751 1.12610 1.20732 0.98435 0.92291 0.99407 1.20711 0.93649 0.97607 1.14295 1.20950 0.95251 0.96648 1.00594 1.21295 0.99072 0.92931 1.08223 1.17734 0.91403 0.93579 0.87777 1.19722 1.03185 0.94749 1.33918 0.90208 1.26740 0.98768 1.00634 0.92100 1.69935 1.19603 1.34400 1.21855 0.85339 0.77560 0.77802 0.79912 1.19785 1.17195 1.19075 0.86977 0.90718 0.90895 0.80760 0.80202 0.80057 0.93121 0.91026 0.75657 0.86713 0.88428 0.86483 0.86615 0.87681 0.88592 0.90739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.27 16 2 O -0.33 -6.90 9.54 -92.49 -0.88 -7.78 16 3 C 0.09 1.94 6.67 22.60 0.15 2.09 16 4 C -0.16 -2.14 9.14 22.56 0.21 -1.93 16 5 C -0.11 -1.26 10.11 22.34 0.23 -1.03 16 6 C 0.05 0.85 11.18 84.69 0.95 1.80 16 7 N -0.47 -12.53 10.27 -183.51 -1.88 -14.42 16 8 C 0.06 1.60 6.16 42.67 0.26 1.86 16 9 C 0.19 6.47 5.75 85.63 0.49 6.96 16 10 N -0.72 -24.75 5.55 -466.79 -2.59 -27.34 16 11 C 0.52 22.67 7.82 87.65 0.69 23.36 16 12 O -0.57 -31.67 16.03 -3.04 -0.05 -31.72 16 13 C -0.07 -2.65 5.35 29.10 0.16 -2.49 16 14 C -0.19 -9.34 4.43 -19.40 -0.09 -9.43 16 15 C -0.09 -4.23 9.66 22.22 0.21 -4.01 16 16 C -0.24 -11.46 10.05 22.46 0.23 -11.23 16 17 C -0.12 -5.92 10.02 22.22 0.22 -5.70 16 18 C -0.20 -11.22 8.68 22.73 0.20 -11.03 16 19 C 0.10 5.55 5.56 -21.29 -0.12 5.43 16 20 C -0.49 -27.39 8.46 23.46 0.20 -27.20 16 21 H 0.08 4.22 6.36 -2.91 -0.02 4.21 16 22 C 0.03 1.71 5.16 85.26 0.44 2.15 16 23 N -0.83 -48.12 10.98 21.83 0.24 -47.88 16 24 Si 0.97 41.49 29.59 68.60 2.03 43.52 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 27 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 28 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.49 7.69 -2.39 -0.02 0.48 16 30 H 0.07 0.49 7.71 -2.38 -0.02 0.48 16 31 H 0.18 1.03 6.45 -2.91 -0.02 1.01 16 32 H 0.18 0.55 8.06 -2.91 -0.02 0.52 16 33 H 0.18 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.07 2.56 7.51 -2.39 -0.02 2.54 16 36 H 0.41 11.48 8.46 -92.71 -0.78 10.69 16 37 H 0.11 3.63 8.06 -2.39 -0.02 3.61 16 38 H 0.10 3.82 6.48 -2.39 -0.02 3.81 16 39 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 40 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 41 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.10 5.75 6.23 -2.91 -0.02 5.73 16 43 H 0.28 14.92 8.30 -92.71 -0.77 14.15 16 Total: -1.00 -81.43 367.14 2.66 -78.76 By element: Atomic # 1 Polarization: 35.73 SS G_CDS: 0.27 Total: 36.00 kcal Atomic # 6 Polarization: -34.67 SS G_CDS: 5.53 Total: -29.13 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -4.23 Total: -89.64 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -0.93 Total: -39.50 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -81.43 2.66 -78.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433507051.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.037 kcal (2) G-P(sol) polarization free energy of solvation -81.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds