Wall clock time and date at job start Tue Mar 31 2020 14:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46493 * 120.00216 * 2 1 4 4 C 1.53003 * 109.47060 * 269.99743 * 3 2 1 5 5 H 1.08992 * 109.46963 * 304.99727 * 4 3 2 6 6 O 1.42903 * 109.46911 * 65.00017 * 4 3 2 7 7 C 1.50707 * 109.46801 * 184.99685 * 4 3 2 8 8 C 1.38675 * 120.41561 * 99.72830 * 7 4 3 9 9 C 1.38624 * 118.41715 * 179.78198 * 8 7 4 10 10 C 1.38225 * 119.16103 * 0.50344 * 9 8 7 11 11 N 1.31852 * 120.76614 * 359.73236 * 10 9 8 12 12 C 1.31887 * 121.72262 * 0.02562 * 11 10 9 13 13 C 1.34777 * 120.00032 * 179.97438 * 2 1 3 14 14 O 1.21611 * 120.00058 * 184.40217 * 13 2 1 15 15 C 1.47436 * 120.00103 * 4.40074 * 13 2 1 16 16 C 1.39229 * 120.28087 * 312.05562 * 15 13 2 17 17 C 1.38214 * 120.08923 * 180.02562 * 16 15 13 18 18 C 1.38826 * 120.68190 * 359.97438 * 17 16 15 19 19 C 1.37604 * 120.56613 * 0.02562 * 18 17 16 20 20 C 1.40707 * 119.88271 * 359.97438 * 19 18 17 21 21 C 1.40887 * 120.32552 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99810 * 146.63094 * 21 20 19 23 23 C 1.40265 * 120.00183 * 326.62642 * 21 20 19 24 24 N 1.30632 * 120.00172 * 0.42235 * 23 21 20 25 25 Si 1.86801 * 120.00268 * 180.41938 * 23 21 20 26 26 H 1.48504 * 109.47120 * 90.00098 * 25 23 21 27 27 H 1.48500 * 109.47396 * 210.00225 * 25 23 21 28 28 H 1.48502 * 109.47106 * 330.00512 * 25 23 21 29 29 H 1.09000 * 109.47439 * 272.65390 * 1 2 3 30 30 H 1.08998 * 109.46974 * 32.66141 * 1 2 3 31 31 H 1.09006 * 109.47041 * 152.65977 * 1 2 3 32 32 H 1.09006 * 109.47238 * 29.99669 * 3 2 1 33 33 H 1.09007 * 109.47490 * 149.99565 * 3 2 1 34 34 H 0.96701 * 114.00113 * 60.00051 * 6 4 3 35 35 H 1.07996 * 120.78739 * 0.02562 * 8 7 4 36 36 H 1.07999 * 120.41747 * 180.21708 * 9 8 7 37 37 H 1.08007 * 119.62021 * 179.74953 * 10 9 8 38 38 H 1.08007 * 119.61324 * 180.02562 * 12 11 10 39 39 H 1.07996 * 119.95482 * 359.97438 * 16 15 13 40 40 H 1.08006 * 119.66406 * 180.02562 * 17 16 15 41 41 H 1.07995 * 119.72006 * 180.02562 * 18 17 16 42 42 H 1.07998 * 120.05900 * 179.72754 * 19 18 17 43 43 H 0.97001 * 120.00132 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9642 0.9130 -1.9815 6 8 1.2060 1.9934 -2.0814 7 6 3.3108 2.9491 -1.4443 8 6 4.6741 2.8584 -1.6812 9 6 5.4233 4.0247 -1.6778 10 6 4.7928 5.2295 -1.4296 11 7 3.4948 5.2774 -1.2034 12 6 2.7501 4.1889 -1.2038 13 6 2.1388 -1.1672 0.0005 14 8 3.3523 -1.1687 0.0814 15 6 1.4050 -2.4422 -0.0969 16 6 0.2997 -2.6799 0.7158 17 6 -0.3850 -3.8768 0.6215 18 6 0.0163 -4.8535 -0.2797 19 6 1.1048 -4.6476 -1.0961 20 6 1.8192 -3.4378 -1.0200 21 6 2.9353 -3.2173 -1.8510 22 1 3.1533 -2.2222 -2.2096 23 6 3.7634 -4.2902 -2.2125 24 7 3.4951 -5.4952 -1.7854 25 14 5.2500 -3.9959 -3.3048 26 1 6.4326 -3.6914 -2.4598 27 1 5.5191 -5.2124 -4.1129 28 1 4.9801 -2.8500 -4.2099 29 1 -0.3634 0.0476 1.0265 30 1 -0.3633 0.8652 -0.5546 31 1 -0.3633 -0.9129 -0.4720 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1383 0.5139 34 1 0.6955 2.6949 -1.6543 35 1 5.1403 1.9023 -1.8679 36 1 6.4870 3.9919 -1.8621 37 1 5.3701 6.1423 -1.4212 38 1 1.6896 4.2676 -1.0148 39 1 -0.0225 -1.9284 1.4213 40 1 -1.2418 -4.0538 1.2550 41 1 -0.5303 -5.7829 -0.3407 42 1 1.4125 -5.4148 -1.7911 43 1 4.0680 -6.2370 -2.0350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434408999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:20 Heat of formation + Delta-G solvation = -21.895800 kcal Electronic energy + Delta-G solvation = -27438.167803 eV Core-core repulsion = 23641.269515 eV Total energy + Delta-G solvation = -3796.898288 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.56263 -39.34583 -37.55252 -36.63850 -34.61618 -33.64943 -32.93836 -31.71152 -30.31899 -29.72774 -28.36305 -26.12539 -25.43953 -24.33632 -23.71853 -22.02331 -21.34755 -20.90916 -18.82268 -17.70800 -17.26027 -16.77522 -16.61011 -16.17015 -15.76985 -15.46036 -15.14876 -14.58229 -14.46745 -14.21011 -14.05552 -13.70705 -13.38940 -13.19269 -13.07194 -12.66221 -12.43985 -12.36637 -12.15214 -11.88228 -11.75113 -11.56451 -11.43056 -11.13196 -11.09734 -10.82987 -10.51231 -10.47211 -9.96465 -9.94994 -9.71151 -9.61958 -9.30325 -9.22354 -8.72604 -8.06520 -7.54789 -7.39478 -6.74474 -4.46197 0.88311 1.10682 2.44858 2.80976 3.06525 3.11586 3.20456 3.45596 3.64818 3.88627 3.94014 4.19124 4.34234 4.59023 4.63035 4.69324 4.79501 4.89860 5.03263 5.13462 5.32969 5.47427 5.53100 5.57343 5.66945 5.76634 5.86860 5.96458 6.01663 6.08236 6.20117 6.23298 6.31882 6.47738 6.54437 6.97119 7.02070 7.09837 7.22890 7.44641 7.52291 7.64194 7.74973 7.85701 7.95241 8.06388 8.19818 8.54374 8.78838 8.84013 9.14837 10.16294 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.004148 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.874449 B = 6749.257306 C = 8539.408967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.620 5.620 3 C 0.096 3.904 4 C 0.135 3.865 5 H 0.116 0.884 6 O -0.543 6.543 7 C -0.159 4.159 8 C -0.060 4.060 9 C -0.169 4.169 10 C 0.092 3.908 11 N -0.484 5.484 12 C 0.104 3.896 13 C 0.581 3.419 14 O -0.538 6.538 15 C -0.249 4.249 16 C -0.065 4.065 17 C -0.242 4.242 18 C -0.097 4.097 19 C -0.151 4.151 20 C 0.145 3.855 21 C -0.429 4.429 22 H 0.076 0.924 23 C 0.074 3.926 24 N -0.799 5.799 25 Si 0.916 3.084 26 H -0.267 1.267 27 H -0.276 1.276 28 H -0.262 1.262 29 H 0.043 0.957 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.366 0.634 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.155 0.845 38 H 0.151 0.849 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.131 0.869 43 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.527 14.270 0.472 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.355 5.355 3 C -0.029 4.029 4 C 0.074 3.926 5 H 0.134 0.866 6 O -0.348 6.348 7 C -0.162 4.162 8 C -0.086 4.086 9 C -0.189 4.189 10 C -0.065 4.065 11 N -0.193 5.193 12 C -0.053 4.053 13 C 0.374 3.626 14 O -0.415 6.415 15 C -0.254 4.254 16 C -0.084 4.084 17 C -0.261 4.261 18 C -0.116 4.116 19 C -0.171 4.171 20 C 0.142 3.858 21 C -0.458 4.458 22 H 0.095 0.905 23 C -0.143 4.143 24 N -0.425 5.425 25 Si 0.741 3.259 26 H -0.192 1.192 27 H -0.202 1.202 28 H -0.185 1.185 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.213 0.787 35 H 0.158 0.842 36 H 0.154 0.846 37 H 0.172 0.828 38 H 0.169 0.831 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.148 0.852 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.963 14.345 0.267 14.380 hybrid contribution 0.953 -0.337 -0.091 1.015 sum -0.010 14.009 0.175 14.010 Atomic orbital electron populations 1.21877 0.79839 1.03809 1.00343 1.47779 1.06765 1.04883 1.76051 1.21899 0.99044 0.86613 0.95296 1.21348 0.83477 0.92792 0.94957 0.86589 1.86747 1.31837 1.59448 1.56728 1.21601 0.95933 0.97420 1.01285 1.21608 0.93178 0.99505 0.94340 1.22176 1.01564 0.93508 1.01655 1.22768 0.90766 0.97715 0.95205 1.67672 1.06975 1.31769 1.12837 1.22426 0.99855 0.87408 0.95648 1.18618 0.86927 0.83261 0.73762 1.90676 1.14246 1.87218 1.49318 1.19456 1.02811 0.96864 1.06237 1.20688 0.94007 0.96350 0.97317 1.20315 1.03776 0.96211 1.05798 1.20857 0.97132 0.97098 0.96515 1.21583 0.94594 0.99385 1.01503 1.17415 0.90260 0.89626 0.88531 1.19519 1.06929 0.95038 1.24319 0.90548 1.25935 0.99434 0.94301 0.94660 1.69655 1.36134 1.00379 1.36293 0.86167 0.81072 0.78800 0.79866 1.19235 1.20159 1.18546 0.93847 0.92058 0.89494 0.90881 0.89096 0.78694 0.84224 0.84588 0.82792 0.83141 0.88804 0.89088 0.89074 0.85185 0.90754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.21 8.90 59.84 0.53 1.74 16 2 N -0.62 -10.73 2.84 -182.84 -0.52 -11.25 16 3 C 0.10 1.35 5.09 -4.04 -0.02 1.33 16 4 C 0.14 1.85 3.47 -27.88 -0.10 1.75 16 5 H 0.12 1.96 8.03 -51.93 -0.42 1.55 16 6 O -0.54 -6.95 11.98 -35.23 -0.42 -7.37 16 7 C -0.16 -1.92 4.98 -104.48 -0.52 -2.45 16 8 C -0.06 -0.71 9.82 -39.28 -0.39 -1.10 16 9 C -0.17 -1.69 10.11 -39.44 -0.40 -2.09 16 10 C 0.09 0.94 11.18 -17.55 -0.20 0.74 16 11 N -0.48 -5.74 10.36 -13.25 -0.14 -5.87 16 12 C 0.10 1.14 10.49 -17.55 -0.18 0.96 16 13 C 0.58 13.11 6.59 -12.51 -0.08 13.02 16 14 O -0.54 -13.74 15.39 5.27 0.08 -13.66 16 15 C -0.25 -5.96 4.98 -104.36 -0.52 -6.48 16 16 C -0.06 -1.37 7.58 -39.22 -0.30 -1.67 16 17 C -0.24 -5.06 10.03 -39.37 -0.39 -5.46 16 18 C -0.10 -2.17 10.01 -39.60 -0.40 -2.57 16 19 C -0.15 -3.81 8.66 -38.88 -0.34 -4.15 16 20 C 0.15 3.83 5.57 -106.54 -0.59 3.24 16 21 C -0.43 -11.55 7.75 -37.82 -0.29 -11.85 16 22 H 0.08 2.08 7.20 -52.49 -0.38 1.71 16 23 C 0.07 1.89 5.40 -17.30 -0.09 1.79 16 24 N -0.80 -20.59 10.64 55.56 0.59 -20.00 16 25 Si 0.92 19.52 29.56 -169.99 -5.03 14.49 16 26 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 27 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 28 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 29 H 0.04 0.55 7.50 -51.93 -0.39 0.16 16 30 H 0.06 0.71 7.07 -51.93 -0.37 0.35 16 31 H 0.09 1.43 5.66 -51.93 -0.29 1.14 16 32 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.09 1.44 7.36 -51.92 -0.38 1.06 16 34 H 0.37 3.05 7.53 45.56 0.34 3.39 16 35 H 0.14 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 37 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 38 H 0.15 1.23 6.80 -52.48 -0.36 0.88 16 39 H 0.09 1.71 6.43 -52.49 -0.34 1.37 16 40 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 42 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 43 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 359.10 15.07 5.41 5.41 Total: -1.00 -31.89 359.10 -8.87 -40.75 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -4.57 Total: 10.72 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -4.28 Total: -13.23 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: -0.06 Total: -37.12 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.34 Total: -21.03 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.03 Total: 14.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.89 -8.87 -40.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434408999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.859 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds