Wall clock time and date at job start Tue Mar 31 2020 14:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46493 * 120.00216 * 2 1 4 4 C 1.53003 * 109.47060 * 269.99743 * 3 2 1 5 5 H 1.08992 * 109.46963 * 304.99727 * 4 3 2 6 6 O 1.42903 * 109.46911 * 65.00017 * 4 3 2 7 7 C 1.50707 * 109.46801 * 184.99685 * 4 3 2 8 8 C 1.38675 * 120.41561 * 99.72830 * 7 4 3 9 9 C 1.38624 * 118.41715 * 179.78198 * 8 7 4 10 10 C 1.38225 * 119.16103 * 0.50344 * 9 8 7 11 11 N 1.31852 * 120.76614 * 359.73236 * 10 9 8 12 12 C 1.31887 * 121.72262 * 0.02562 * 11 10 9 13 13 C 1.34777 * 120.00032 * 179.97438 * 2 1 3 14 14 O 1.21611 * 120.00058 * 184.40217 * 13 2 1 15 15 C 1.47436 * 120.00103 * 4.40074 * 13 2 1 16 16 C 1.39229 * 120.28087 * 312.05562 * 15 13 2 17 17 C 1.38214 * 120.08923 * 180.02562 * 16 15 13 18 18 C 1.38826 * 120.68190 * 359.97438 * 17 16 15 19 19 C 1.37604 * 120.56613 * 0.02562 * 18 17 16 20 20 C 1.40707 * 119.88271 * 359.97438 * 19 18 17 21 21 C 1.40887 * 120.32552 * 179.97438 * 20 19 18 22 22 H 1.08000 * 119.99810 * 146.63094 * 21 20 19 23 23 C 1.40265 * 120.00183 * 326.62642 * 21 20 19 24 24 N 1.30632 * 120.00172 * 0.42235 * 23 21 20 25 25 Si 1.86801 * 120.00268 * 180.41938 * 23 21 20 26 26 H 1.48504 * 109.47120 * 90.00098 * 25 23 21 27 27 H 1.48500 * 109.47396 * 210.00225 * 25 23 21 28 28 H 1.48502 * 109.47106 * 330.00512 * 25 23 21 29 29 H 1.09000 * 109.47439 * 272.65390 * 1 2 3 30 30 H 1.08998 * 109.46974 * 32.66141 * 1 2 3 31 31 H 1.09006 * 109.47041 * 152.65977 * 1 2 3 32 32 H 1.09006 * 109.47238 * 29.99669 * 3 2 1 33 33 H 1.09007 * 109.47490 * 149.99565 * 3 2 1 34 34 H 0.96701 * 114.00113 * 60.00051 * 6 4 3 35 35 H 1.07996 * 120.78739 * 0.02562 * 8 7 4 36 36 H 1.07999 * 120.41747 * 180.21708 * 9 8 7 37 37 H 1.08007 * 119.62021 * 179.74953 * 10 9 8 38 38 H 1.08007 * 119.61324 * 180.02562 * 12 11 10 39 39 H 1.07996 * 119.95482 * 359.97438 * 16 15 13 40 40 H 1.08006 * 119.66406 * 180.02562 * 17 16 15 41 41 H 1.07995 * 119.72006 * 180.02562 * 18 17 16 42 42 H 1.07998 * 120.05900 * 179.72754 * 19 18 17 43 43 H 0.97001 * 120.00132 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4525 1.7103 -1.4425 5 1 2.9642 0.9130 -1.9815 6 8 1.2060 1.9934 -2.0814 7 6 3.3108 2.9491 -1.4443 8 6 4.6741 2.8584 -1.6812 9 6 5.4233 4.0247 -1.6778 10 6 4.7928 5.2295 -1.4296 11 7 3.4948 5.2774 -1.2034 12 6 2.7501 4.1889 -1.2038 13 6 2.1388 -1.1672 0.0005 14 8 3.3523 -1.1687 0.0814 15 6 1.4050 -2.4422 -0.0969 16 6 0.2997 -2.6799 0.7158 17 6 -0.3850 -3.8768 0.6215 18 6 0.0163 -4.8535 -0.2797 19 6 1.1048 -4.6476 -1.0961 20 6 1.8192 -3.4378 -1.0200 21 6 2.9353 -3.2173 -1.8510 22 1 3.1533 -2.2222 -2.2096 23 6 3.7634 -4.2902 -2.2125 24 7 3.4951 -5.4952 -1.7854 25 14 5.2500 -3.9959 -3.3048 26 1 6.4326 -3.6914 -2.4598 27 1 5.5191 -5.2124 -4.1129 28 1 4.9801 -2.8500 -4.2099 29 1 -0.3634 0.0476 1.0265 30 1 -0.3633 0.8652 -0.5546 31 1 -0.3633 -0.9129 -0.4720 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1383 0.5139 34 1 0.6955 2.6949 -1.6543 35 1 5.1403 1.9023 -1.8679 36 1 6.4870 3.9919 -1.8621 37 1 5.3701 6.1423 -1.4212 38 1 1.6896 4.2676 -1.0148 39 1 -0.0225 -1.9284 1.4213 40 1 -1.2418 -4.0538 1.2550 41 1 -0.5303 -5.7829 -0.3407 42 1 1.4125 -5.4148 -1.7911 43 1 4.0680 -6.2370 -2.0350 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434408999.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:19 Heat of formation + Delta-G solvation = -43.009922 kcal Electronic energy + Delta-G solvation = -27439.083380 eV Core-core repulsion = 23641.269515 eV Total energy + Delta-G solvation = -3797.813865 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53048 -40.84582 -38.95668 -38.14626 -36.14283 -35.45872 -33.85555 -32.62645 -31.95926 -31.48500 -29.61895 -27.62995 -27.05187 -25.56500 -24.58787 -23.41114 -22.81384 -22.46657 -20.39873 -19.13954 -18.64176 -18.04367 -17.63399 -17.42648 -17.27295 -16.77740 -16.66216 -16.09922 -15.66479 -15.48600 -15.16862 -15.08106 -14.71039 -14.52790 -14.34098 -14.06979 -14.02749 -13.68557 -13.52445 -13.32185 -13.11695 -12.92232 -12.85603 -12.77196 -12.57047 -12.48057 -12.21332 -11.79302 -11.58571 -11.49572 -11.16335 -10.85784 -10.55791 -10.41697 -10.08569 -9.48128 -9.31012 -9.22675 -8.61659 -6.42483 0.04767 0.23626 0.64412 1.02585 1.28697 1.41345 1.45981 1.99542 2.16295 2.30080 2.75128 2.77036 3.35931 3.37879 3.65312 3.69704 3.78827 3.88292 3.94171 4.03402 4.12854 4.27947 4.33249 4.48890 4.51876 4.60721 4.65485 4.69577 4.79628 4.83710 4.90361 5.06094 5.08522 5.11756 5.25505 5.28498 5.37417 5.59676 5.66821 5.72934 5.85944 6.03289 6.11604 6.28524 6.49473 6.66992 6.74735 6.88371 6.92734 6.95188 7.47646 8.30951 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.004148 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.874449 B = 6749.257306 C = 8539.408967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.611 5.611 3 C 0.096 3.904 4 C 0.152 3.848 5 H 0.069 0.931 6 O -0.554 6.554 7 C -0.170 4.170 8 C -0.083 4.083 9 C -0.167 4.167 10 C 0.092 3.908 11 N -0.502 5.502 12 C 0.106 3.894 13 C 0.573 3.427 14 O -0.584 6.584 15 C -0.263 4.263 16 C -0.060 4.060 17 C -0.230 4.230 18 C -0.097 4.097 19 C -0.180 4.180 20 C 0.112 3.888 21 C -0.465 4.465 22 H 0.053 0.947 23 C 0.034 3.966 24 N -0.828 5.828 25 Si 0.975 3.025 26 H -0.271 1.271 27 H -0.255 1.255 28 H -0.264 1.264 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.389 0.611 35 H 0.127 0.873 36 H 0.161 0.839 37 H 0.186 0.814 38 H 0.181 0.819 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.250 16.569 1.647 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C -0.027 4.027 4 C 0.090 3.910 5 H 0.087 0.913 6 O -0.362 6.362 7 C -0.173 4.173 8 C -0.109 4.109 9 C -0.186 4.186 10 C -0.064 4.064 11 N -0.210 5.210 12 C -0.051 4.051 13 C 0.365 3.635 14 O -0.464 6.464 15 C -0.267 4.267 16 C -0.078 4.078 17 C -0.249 4.249 18 C -0.115 4.115 19 C -0.199 4.199 20 C 0.108 3.892 21 C -0.495 4.495 22 H 0.072 0.928 23 C -0.179 4.179 24 N -0.455 5.455 25 Si 0.796 3.204 26 H -0.197 1.197 27 H -0.178 1.178 28 H -0.188 1.188 29 H 0.091 0.909 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.137 0.863 33 H 0.088 0.912 34 H 0.239 0.761 35 H 0.145 0.855 36 H 0.178 0.822 37 H 0.202 0.798 38 H 0.197 0.803 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.751 16.681 1.448 16.968 hybrid contribution 1.313 -0.930 -0.348 1.646 sum -1.438 15.750 1.099 15.854 Atomic orbital electron populations 1.22107 0.77541 1.04215 1.02473 1.47730 1.08210 1.04432 1.73959 1.22108 0.98652 0.85992 0.95960 1.20846 0.83967 0.92439 0.93727 0.91253 1.86708 1.31636 1.60660 1.57190 1.21438 0.95733 0.97209 1.02899 1.21743 0.93809 0.99984 0.95338 1.22434 1.02721 0.92705 1.00771 1.23317 0.90606 0.98795 0.93716 1.67763 1.07808 1.31925 1.13521 1.22802 1.01150 0.86457 0.94673 1.18600 0.86431 0.84564 0.73881 1.90638 1.16068 1.88055 1.51677 1.19820 1.03612 0.97273 1.06008 1.21050 0.92690 0.97344 0.96765 1.20813 1.04151 0.95142 1.04772 1.21204 0.96026 0.98623 0.95677 1.21521 0.96332 0.99114 1.02962 1.17763 0.90707 0.91083 0.89603 1.19505 1.08759 0.94522 1.26710 0.92822 1.26625 1.01604 0.93964 0.95751 1.69700 1.37338 1.00877 1.37552 0.85317 0.77521 0.79279 0.78270 1.19655 1.17840 1.18760 0.90921 0.88806 0.91747 0.86261 0.91247 0.76102 0.85541 0.82162 0.79753 0.80260 0.85245 0.84970 0.86346 0.87034 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.02 8.90 127.77 1.14 3.15 16 2 N -0.61 -20.71 2.84 -850.65 -2.41 -23.12 16 3 C 0.10 2.63 5.09 86.38 0.44 3.07 16 4 C 0.15 4.18 3.47 29.85 0.10 4.28 16 5 H 0.07 2.57 8.03 -2.39 -0.02 2.55 16 6 O -0.55 -13.38 11.98 -148.98 -1.78 -15.17 16 7 C -0.17 -4.03 4.98 -19.77 -0.10 -4.13 16 8 C -0.08 -2.00 9.82 22.47 0.22 -1.78 16 9 C -0.17 -3.14 10.11 22.36 0.23 -2.91 16 10 C 0.09 1.66 11.18 84.69 0.95 2.60 16 11 N -0.50 -10.67 10.36 -195.84 -2.03 -12.70 16 12 C 0.11 2.10 10.49 84.67 0.89 2.99 16 13 C 0.57 26.62 6.59 86.67 0.57 27.19 16 14 O -0.58 -31.64 15.39 -4.07 -0.06 -31.71 16 15 C -0.26 -12.81 4.98 -19.70 -0.10 -12.91 16 16 C -0.06 -2.42 7.58 22.50 0.17 -2.25 16 17 C -0.23 -8.96 10.03 22.40 0.22 -8.74 16 18 C -0.10 -4.23 10.01 22.26 0.22 -4.01 16 19 C -0.18 -9.38 8.66 22.72 0.20 -9.18 16 20 C 0.11 6.18 5.57 -21.11 -0.12 6.06 16 21 C -0.46 -26.88 7.75 23.41 0.18 -26.70 16 22 H 0.05 3.21 7.20 -2.91 -0.02 3.19 16 23 C 0.03 1.85 5.40 85.36 0.46 2.31 16 24 N -0.83 -44.86 10.64 21.88 0.23 -44.63 16 25 Si 0.97 42.19 29.56 68.60 2.03 44.22 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 28 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 29 H 0.07 1.49 7.50 -2.39 -0.02 1.47 16 30 H 0.09 1.81 7.07 -2.39 -0.02 1.80 16 31 H 0.06 1.99 5.66 -2.38 -0.01 1.98 16 32 H 0.12 2.16 8.07 -2.38 -0.02 2.14 16 33 H 0.07 2.25 7.36 -2.38 -0.02 2.23 16 34 H 0.39 5.15 7.53 -74.06 -0.56 4.59 16 35 H 0.13 3.29 8.06 -2.91 -0.02 3.27 16 36 H 0.16 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.19 2.06 8.06 -2.91 -0.02 2.03 16 38 H 0.18 2.28 6.80 -2.91 -0.02 2.26 16 39 H 0.13 4.23 6.43 -2.91 -0.02 4.21 16 40 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 41 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 42 H 0.11 6.13 6.16 -2.91 -0.02 6.11 16 43 H 0.29 14.11 8.29 -92.71 -0.77 13.34 16 Total: -1.00 -75.39 359.10 2.14 -73.25 By element: Atomic # 1 Polarization: 30.31 SS G_CDS: 0.50 Total: 30.81 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: 5.68 Total: -20.95 kcal Atomic # 7 Polarization: -76.25 SS G_CDS: -4.21 Total: -80.46 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -1.85 Total: -46.87 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -75.39 2.14 -73.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434408999.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.240 kcal (2) G-P(sol) polarization free energy of solvation -75.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds