Wall clock time and date at job start Tue Mar 31 2020 14:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35919 * 119.44944 * 2 1 4 4 C 1.35000 * 120.89809 * 179.73039 * 3 2 1 5 5 C 1.41040 * 119.79057 * 0.50990 * 4 3 2 6 6 N 1.38857 * 120.52150 * 179.75753 * 5 4 3 7 7 C 1.34777 * 119.99548 * 302.46689 * 6 5 4 8 8 O 1.21260 * 120.00092 * 5.02544 * 7 6 5 9 9 C 1.50702 * 119.99614 * 185.01291 * 7 6 5 10 10 C 1.53004 * 109.47039 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47281 * 305.98513 * 10 9 7 12 12 C 1.50700 * 109.46755 * 65.98004 * 10 9 7 13 13 H 1.07999 * 120.00314 * 35.05258 * 12 10 9 14 14 C 1.37874 * 120.00036 * 215.05299 * 12 10 9 15 15 N 1.31518 * 120.00397 * 184.85096 * 14 12 10 16 16 Si 1.86804 * 120.00016 * 4.84596 * 14 12 10 17 17 H 1.48495 * 109.46981 * 94.33480 * 16 14 12 18 18 H 1.48498 * 109.47062 * 214.33713 * 16 14 12 19 19 H 1.48501 * 109.47008 * 334.33310 * 16 14 12 20 20 C 1.50698 * 109.47069 * 185.97771 * 10 9 7 21 21 C 1.38236 * 120.00087 * 294.53271 * 20 10 9 22 22 C 1.38236 * 119.99889 * 179.79314 * 21 20 10 23 23 C 1.38235 * 120.00046 * 0.43004 * 22 21 20 24 24 C 1.38235 * 119.99901 * 359.82487 * 23 22 21 25 25 C 1.38235 * 119.99815 * 114.80325 * 20 10 9 26 26 C 1.38389 * 118.94880 * 359.47646 * 5 4 3 27 27 C 1.34581 * 119.45376 * 179.97438 * 2 1 3 28 28 O 1.22117 * 119.92656 * 359.97438 * 27 2 1 29 29 H 1.09008 * 109.46946 * 270.02039 * 1 2 3 30 30 H 1.08998 * 109.47540 * 30.01987 * 1 2 3 31 31 H 1.09002 * 109.47222 * 150.02122 * 1 2 3 32 32 H 1.08006 * 119.55495 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.10321 * 180.26286 * 4 3 2 34 34 H 0.96997 * 119.99688 * 122.47758 * 6 5 4 35 35 H 1.08997 * 109.47560 * 300.00452 * 9 7 6 36 36 H 1.09006 * 109.46886 * 60.00856 * 9 7 6 37 37 H 0.96996 * 120.00039 * 179.97438 * 15 14 12 38 38 H 1.08004 * 120.00024 * 359.97438 * 21 20 10 39 39 H 1.08001 * 119.99641 * 180.27584 * 22 21 20 40 40 H 1.07995 * 120.00165 * 179.83631 * 23 22 21 41 41 H 1.08002 * 120.00001 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.99985 * 359.97438 * 25 20 10 43 43 H 1.08003 * 120.44559 * 180.25962 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1332 1.1836 0.0000 4 6 3.4828 1.2177 0.0055 5 6 4.2143 0.0118 0.0003 6 7 5.6027 0.0293 0.0008 7 6 6.2688 0.6686 -0.9811 8 8 5.6582 1.3049 -1.8133 9 6 7.7726 0.5929 -1.0444 10 6 8.2739 1.3997 -2.2439 11 1 7.7695 1.0583 -3.1478 12 6 7.9780 2.8611 -2.0251 13 1 8.0295 3.2796 -1.0309 14 6 7.6414 3.6639 -3.0944 15 7 7.4766 4.9569 -2.9197 16 14 7.4198 2.9150 -4.7913 17 1 5.9847 2.6031 -5.0111 18 1 7.8803 3.8797 -5.8221 19 1 8.2183 1.6668 -4.8896 20 6 9.7607 1.2052 -2.3941 21 6 10.6209 1.6711 -1.4174 22 6 11.9844 1.4889 -1.5532 23 6 12.4884 0.8487 -2.6700 24 6 11.6285 0.3876 -3.6492 25 6 10.2647 0.5660 -3.5114 26 6 3.5263 -1.1889 0.0008 27 6 2.1267 -1.1719 0.0005 28 8 1.5047 -2.2228 0.0015 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.5770 2.1094 -0.0004 33 1 4.0006 2.1654 0.0097 34 1 6.0931 -0.4188 0.7076 35 1 8.1961 1.0039 -0.1280 36 1 8.0798 -0.4475 -1.1520 37 1 7.2402 5.5217 -3.6720 38 1 10.2274 2.1748 -0.5468 39 1 12.6562 1.8489 -0.7880 40 1 13.5538 0.7087 -2.7774 41 1 12.0223 -0.1122 -4.5219 42 1 9.5928 0.2055 -4.2763 43 1 4.0621 -2.1267 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001436286150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:50 Heat of formation + Delta-G solvation = -4.833824 kcal Electronic energy + Delta-G solvation = -26876.607905 eV Core-core repulsion = 23080.449480 eV Total energy + Delta-G solvation = -3796.158425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.32532 -39.60729 -38.53456 -36.83010 -35.66171 -34.12618 -32.61147 -31.70392 -30.24342 -29.87163 -29.13954 -27.34947 -25.95503 -23.80597 -23.13888 -22.25151 -21.83953 -20.39544 -19.39772 -17.75983 -17.47914 -17.08162 -16.99199 -16.61167 -16.03762 -15.84513 -15.19008 -14.68626 -14.63375 -14.21610 -14.01121 -13.89778 -13.40411 -13.30475 -13.07791 -12.83537 -12.74693 -12.62758 -12.41131 -12.17200 -11.92756 -11.87275 -11.69013 -11.19244 -10.85325 -10.58110 -10.45174 -10.32047 -10.11695 -9.95607 -9.62768 -9.35098 -9.12462 -8.86488 -8.47497 -8.24773 -7.96195 -7.86950 -6.05919 -4.03817 0.74631 1.90178 2.06135 2.10592 2.63384 3.14680 3.28368 3.38638 3.43031 3.47626 3.67005 4.47439 4.51779 4.52988 4.62337 5.05233 5.08469 5.16512 5.23013 5.31946 5.44543 5.46879 5.48875 5.52141 5.62175 5.64956 5.83275 5.88788 6.02180 6.05576 6.19974 6.26707 6.29352 6.30548 6.51528 6.64201 6.78183 6.86398 6.95261 7.05972 7.11083 7.22190 7.51516 7.62003 7.67209 7.76880 8.04940 8.44555 8.66313 8.92713 9.59236 11.06556 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.003358 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.458502 B = 8335.201162 C = 9233.262834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.504 5.504 3 C 0.133 3.867 4 C -0.208 4.208 5 C 0.266 3.734 6 N -0.700 5.700 7 C 0.517 3.483 8 O -0.477 6.477 9 C -0.116 4.116 10 C 0.053 3.947 11 H 0.053 0.947 12 C -0.491 4.491 13 H 0.072 0.928 14 C 0.087 3.913 15 N -0.897 5.897 16 Si 0.872 3.128 17 H -0.276 1.276 18 H -0.294 1.294 19 H -0.258 1.258 20 C -0.040 4.040 21 C -0.100 4.100 22 C -0.128 4.128 23 C -0.148 4.148 24 C -0.126 4.126 25 C -0.136 4.136 26 C -0.281 4.281 27 C 0.523 3.477 28 O -0.567 6.567 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.166 0.834 33 H 0.154 0.846 34 H 0.410 0.590 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.262 0.738 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.319 -8.377 7.535 12.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.216 5.216 3 C 0.006 3.994 4 C -0.232 4.232 5 C 0.167 3.833 6 N -0.352 5.352 7 C 0.305 3.695 8 O -0.345 6.345 9 C -0.156 4.156 10 C 0.033 3.967 11 H 0.071 0.929 12 C -0.528 4.528 13 H 0.090 0.910 14 C -0.115 4.115 15 N -0.534 5.534 16 Si 0.700 3.300 17 H -0.202 1.202 18 H -0.221 1.221 19 H -0.183 1.183 20 C -0.040 4.040 21 C -0.118 4.118 22 C -0.146 4.146 23 C -0.167 4.167 24 C -0.145 4.145 25 C -0.155 4.155 26 C -0.306 4.306 27 C 0.327 3.673 28 O -0.451 6.451 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.183 0.817 33 H 0.172 0.828 34 H 0.248 0.752 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.138 0.862 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.130 0.870 43 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.191 -8.363 6.764 11.943 hybrid contribution 0.244 -0.168 -0.686 0.747 sum -4.947 -8.531 6.078 11.584 Atomic orbital electron populations 1.22106 0.77559 1.04830 1.03583 1.45403 1.09141 1.06835 1.60247 1.21750 0.93421 0.89237 0.94952 1.20922 0.92400 0.99594 1.10326 1.18165 0.84316 0.92630 0.88166 1.43779 1.03628 1.58055 1.29723 1.21141 0.90973 0.77361 0.79982 1.90779 1.69315 1.36290 1.38157 1.21717 0.89585 1.01104 1.03190 1.18205 0.87345 0.97115 0.94011 0.92862 1.20586 1.46349 0.90041 0.95853 0.90994 1.24874 0.93642 0.94390 0.98636 1.69890 1.47784 1.04079 1.31688 0.86927 0.79046 0.79494 0.84513 1.20187 1.22126 1.18307 1.20698 0.98327 0.92188 0.92821 1.20970 0.92374 0.98738 0.99766 1.21061 0.95612 1.00046 0.97859 1.20874 0.98631 1.01698 0.95451 1.20974 0.93757 1.01080 0.98640 1.21160 0.94940 1.00811 0.98539 1.22248 0.92719 0.98643 1.16941 1.16612 0.88691 0.82643 0.79397 1.90942 1.69539 1.29835 1.54824 0.90821 0.89803 0.88963 0.81704 0.82831 0.75248 0.89209 0.90747 0.92808 0.86188 0.87166 0.87411 0.87359 0.87008 0.83376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.51 10.34 59.85 0.62 1.13 16 2 N -0.50 -6.00 2.99 -127.45 -0.38 -6.38 16 3 C 0.13 1.44 10.26 -16.89 -0.17 1.26 16 4 C -0.21 -2.81 8.84 -39.67 -0.35 -3.16 16 5 C 0.27 3.77 5.83 -83.56 -0.49 3.28 16 6 N -0.70 -9.49 5.26 -9.71 -0.05 -9.54 16 7 C 0.52 9.17 7.44 -10.98 -0.08 9.09 16 8 O -0.48 -10.72 14.10 5.57 0.08 -10.64 16 9 C -0.12 -1.95 4.96 -27.88 -0.14 -2.09 16 10 C 0.05 1.13 1.24 -92.92 -0.12 1.01 16 11 H 0.05 1.23 4.59 -51.93 -0.24 1.00 16 12 C -0.49 -12.70 6.91 -34.44 -0.24 -12.93 16 13 H 0.07 2.00 8.06 -52.49 -0.42 1.58 16 14 C 0.09 2.45 5.47 -17.82 -0.10 2.35 16 15 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 16 Si 0.87 22.08 27.29 -169.99 -4.64 17.44 16 17 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 18 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 19 H -0.26 -6.07 4.88 56.52 0.28 -5.79 16 20 C -0.04 -0.79 4.77 -104.62 -0.50 -1.29 16 21 C -0.10 -1.86 8.90 -39.58 -0.35 -2.21 16 22 C -0.13 -2.09 10.05 -39.58 -0.40 -2.48 16 23 C -0.15 -2.33 10.05 -39.58 -0.40 -2.73 16 24 C -0.13 -2.10 10.05 -39.58 -0.40 -2.49 16 25 C -0.14 -2.58 9.17 -39.58 -0.36 -2.94 16 26 C -0.28 -4.01 9.96 -38.88 -0.39 -4.39 16 27 C 0.52 7.93 7.39 -15.70 -0.12 7.82 16 28 O -0.57 -10.21 16.61 4.81 0.08 -10.13 16 29 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 30 H 0.08 0.46 8.00 -51.93 -0.42 0.05 16 31 H 0.09 0.89 7.37 -51.93 -0.38 0.50 16 32 H 0.17 1.15 8.03 -52.48 -0.42 0.72 16 33 H 0.15 2.24 7.91 -52.49 -0.42 1.83 16 34 H 0.41 4.03 8.82 -40.82 -0.36 3.67 16 35 H 0.09 1.37 7.96 -51.93 -0.41 0.96 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.12 2.17 7.84 -52.48 -0.41 1.76 16 39 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 42 H 0.11 2.09 7.01 -52.49 -0.37 1.72 16 43 H 0.15 1.96 8.06 -52.48 -0.42 1.54 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -35.73 363.34 -8.28 -44.02 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -5.65 Total: 6.65 kcal Atomic # 6 Polarization: -6.81 SS G_CDS: -3.97 Total: -10.78 kcal Atomic # 7 Polarization: -42.37 SS G_CDS: 0.34 Total: -42.03 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.16 Total: -20.77 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.64 Total: 17.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.73 -8.28 -44.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436286150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.185 kcal (2) G-P(sol) polarization free energy of solvation -35.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds