Wall clock time and date at job start Tue Mar 31 2020 14:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35919 * 119.44944 * 2 1 4 4 C 1.35000 * 120.89809 * 179.73039 * 3 2 1 5 5 C 1.41040 * 119.79057 * 0.50990 * 4 3 2 6 6 N 1.38857 * 120.52150 * 179.75753 * 5 4 3 7 7 C 1.34777 * 119.99548 * 302.46689 * 6 5 4 8 8 O 1.21260 * 120.00092 * 5.02544 * 7 6 5 9 9 C 1.50702 * 119.99614 * 185.01291 * 7 6 5 10 10 C 1.53004 * 109.47039 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.47281 * 305.98513 * 10 9 7 12 12 C 1.50700 * 109.46755 * 65.98004 * 10 9 7 13 13 H 1.07999 * 120.00314 * 35.05258 * 12 10 9 14 14 C 1.37874 * 120.00036 * 215.05299 * 12 10 9 15 15 N 1.31518 * 120.00397 * 184.85096 * 14 12 10 16 16 Si 1.86804 * 120.00016 * 4.84596 * 14 12 10 17 17 H 1.48495 * 109.46981 * 94.33480 * 16 14 12 18 18 H 1.48498 * 109.47062 * 214.33713 * 16 14 12 19 19 H 1.48501 * 109.47008 * 334.33310 * 16 14 12 20 20 C 1.50698 * 109.47069 * 185.97771 * 10 9 7 21 21 C 1.38236 * 120.00087 * 294.53271 * 20 10 9 22 22 C 1.38236 * 119.99889 * 179.79314 * 21 20 10 23 23 C 1.38235 * 120.00046 * 0.43004 * 22 21 20 24 24 C 1.38235 * 119.99901 * 359.82487 * 23 22 21 25 25 C 1.38235 * 119.99815 * 114.80325 * 20 10 9 26 26 C 1.38389 * 118.94880 * 359.47646 * 5 4 3 27 27 C 1.34581 * 119.45376 * 179.97438 * 2 1 3 28 28 O 1.22117 * 119.92656 * 359.97438 * 27 2 1 29 29 H 1.09008 * 109.46946 * 270.02039 * 1 2 3 30 30 H 1.08998 * 109.47540 * 30.01987 * 1 2 3 31 31 H 1.09002 * 109.47222 * 150.02122 * 1 2 3 32 32 H 1.08006 * 119.55495 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.10321 * 180.26286 * 4 3 2 34 34 H 0.96997 * 119.99688 * 122.47758 * 6 5 4 35 35 H 1.08997 * 109.47560 * 300.00452 * 9 7 6 36 36 H 1.09006 * 109.46886 * 60.00856 * 9 7 6 37 37 H 0.96996 * 120.00039 * 179.97438 * 15 14 12 38 38 H 1.08004 * 120.00024 * 359.97438 * 21 20 10 39 39 H 1.08001 * 119.99641 * 180.27584 * 22 21 20 40 40 H 1.07995 * 120.00165 * 179.83631 * 23 22 21 41 41 H 1.08002 * 120.00001 * 179.97438 * 24 23 22 42 42 H 1.07999 * 119.99985 * 359.97438 * 25 20 10 43 43 H 1.08003 * 120.44559 * 180.25962 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1332 1.1836 0.0000 4 6 3.4828 1.2177 0.0055 5 6 4.2143 0.0118 0.0003 6 7 5.6027 0.0293 0.0008 7 6 6.2688 0.6686 -0.9811 8 8 5.6582 1.3049 -1.8133 9 6 7.7726 0.5929 -1.0444 10 6 8.2739 1.3997 -2.2439 11 1 7.7695 1.0583 -3.1478 12 6 7.9780 2.8611 -2.0251 13 1 8.0295 3.2796 -1.0309 14 6 7.6414 3.6639 -3.0944 15 7 7.4766 4.9569 -2.9197 16 14 7.4198 2.9150 -4.7913 17 1 5.9847 2.6031 -5.0111 18 1 7.8803 3.8797 -5.8221 19 1 8.2183 1.6668 -4.8896 20 6 9.7607 1.2052 -2.3941 21 6 10.6209 1.6711 -1.4174 22 6 11.9844 1.4889 -1.5532 23 6 12.4884 0.8487 -2.6700 24 6 11.6285 0.3876 -3.6492 25 6 10.2647 0.5660 -3.5114 26 6 3.5263 -1.1889 0.0008 27 6 2.1267 -1.1719 0.0005 28 8 1.5047 -2.2228 0.0015 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5141 31 1 -0.3634 -0.8902 -0.5135 32 1 1.5770 2.1094 -0.0004 33 1 4.0006 2.1654 0.0097 34 1 6.0931 -0.4188 0.7076 35 1 8.1961 1.0039 -0.1280 36 1 8.0798 -0.4475 -1.1520 37 1 7.2402 5.5217 -3.6720 38 1 10.2274 2.1748 -0.5468 39 1 12.6562 1.8489 -0.7880 40 1 13.5538 0.7087 -2.7774 41 1 12.0223 -0.1122 -4.5219 42 1 9.5928 0.2055 -4.2763 43 1 4.0621 -2.1267 0.0012 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001436286150.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:49 Heat of formation + Delta-G solvation = -28.114865 kcal Electronic energy + Delta-G solvation = -26877.617447 eV Core-core repulsion = 23080.449480 eV Total energy + Delta-G solvation = -3797.167967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.40847 -40.97937 -39.89583 -38.03586 -36.87559 -35.77050 -33.89608 -33.49059 -31.57811 -30.96658 -30.46504 -28.49022 -27.47661 -24.90799 -24.58068 -23.53183 -23.17175 -21.70428 -20.90989 -19.01390 -18.91996 -18.57265 -18.06297 -17.93680 -17.25215 -16.94489 -16.47375 -16.37005 -16.03341 -15.58605 -15.38832 -15.12436 -14.92888 -14.56766 -14.25900 -14.15246 -14.09468 -13.87796 -13.75917 -13.48415 -13.30633 -13.04034 -12.87433 -12.74683 -12.70708 -12.06148 -11.89294 -11.79663 -11.45368 -11.42346 -11.32774 -11.04181 -10.73665 -10.56805 -10.02822 -9.59680 -9.28784 -9.04788 -8.20400 -6.16294 -0.30433 0.70734 0.75254 0.79331 1.32664 1.39233 1.41789 1.68824 1.76984 2.10031 2.42293 2.58702 3.10066 3.26746 3.67946 3.76415 3.96470 4.14420 4.16112 4.20994 4.31087 4.33550 4.44022 4.46191 4.46666 4.50656 4.56525 4.66563 4.78522 4.87566 4.88983 5.01705 5.07878 5.22062 5.23351 5.31157 5.39508 5.43612 5.68800 5.72662 5.79538 5.84760 6.01340 6.05048 6.35119 6.38523 6.48443 6.83651 6.93184 7.33345 7.48246 8.95921 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015829 B = 0.003358 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.458502 B = 8335.201162 C = 9233.262834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.499 5.499 3 C 0.162 3.838 4 C -0.239 4.239 5 C 0.262 3.738 6 N -0.681 5.681 7 C 0.519 3.481 8 O -0.532 6.532 9 C -0.111 4.111 10 C 0.052 3.948 11 H 0.034 0.966 12 C -0.463 4.463 13 H 0.043 0.957 14 C 0.031 3.969 15 N -0.949 5.949 16 Si 0.914 3.086 17 H -0.291 1.291 18 H -0.299 1.299 19 H -0.232 1.232 20 C -0.062 4.062 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.141 4.141 24 C -0.126 4.126 25 C -0.154 4.154 26 C -0.293 4.293 27 C 0.510 3.490 28 O -0.605 6.605 29 H 0.093 0.907 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.213 0.787 33 H 0.140 0.860 34 H 0.429 0.571 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.258 0.742 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.144 0.856 41 H 0.137 0.863 42 H 0.108 0.892 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.104 -9.649 8.037 12.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.209 5.209 3 C 0.035 3.965 4 C -0.263 4.263 5 C 0.163 3.837 6 N -0.333 5.333 7 C 0.308 3.692 8 O -0.405 6.405 9 C -0.151 4.151 10 C 0.033 3.967 11 H 0.053 0.947 12 C -0.501 4.501 13 H 0.061 0.939 14 C -0.166 4.166 15 N -0.590 5.590 16 Si 0.742 3.258 17 H -0.218 1.218 18 H -0.227 1.227 19 H -0.155 1.155 20 C -0.063 4.063 21 C -0.134 4.134 22 C -0.144 4.144 23 C -0.159 4.159 24 C -0.144 4.144 25 C -0.172 4.172 26 C -0.317 4.317 27 C 0.315 3.685 28 O -0.493 6.493 29 H 0.111 0.889 30 H 0.138 0.862 31 H 0.095 0.905 32 H 0.229 0.771 33 H 0.158 0.842 34 H 0.270 0.730 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.067 0.933 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.155 0.845 42 H 0.126 0.874 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.962 -9.687 7.315 12.769 hybrid contribution -0.109 0.194 -0.717 0.750 sum -4.071 -9.493 6.598 12.256 Atomic orbital electron populations 1.22428 0.75072 1.05917 1.05249 1.45549 1.10817 1.06263 1.58240 1.22339 0.92846 0.90228 0.91136 1.20932 0.93777 0.98757 1.12807 1.18282 0.84310 0.92982 0.88167 1.43453 1.03741 1.56928 1.29198 1.21296 0.91354 0.76674 0.79853 1.90763 1.70290 1.38998 1.40485 1.21646 0.88986 1.02555 1.01912 1.18095 0.88944 0.94608 0.95062 0.94732 1.20806 1.43146 0.92212 0.93908 0.93911 1.25491 0.94824 0.94646 1.01641 1.70013 1.51419 1.05383 1.32200 0.86244 0.78263 0.79824 0.81487 1.21836 1.22650 1.15510 1.20473 0.97027 0.94519 0.94274 1.21038 0.93595 0.99272 0.99534 1.21408 0.94915 0.99202 0.98856 1.21330 1.00443 0.99791 0.94320 1.21323 0.92752 1.00488 0.99830 1.21262 0.96348 1.01572 0.98065 1.22226 0.92747 0.98812 1.17943 1.16773 0.89015 0.83132 0.79567 1.90914 1.70210 1.31226 1.56976 0.88878 0.86158 0.90470 0.77067 0.84248 0.73016 0.87515 0.87221 0.93340 0.86783 0.84327 0.83793 0.84491 0.87428 0.83003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.76 10.34 127.77 1.32 2.09 16 2 N -0.50 -11.06 2.99 -675.29 -2.02 -13.08 16 3 C 0.16 3.17 10.26 83.31 0.85 4.03 16 4 C -0.24 -6.36 8.84 22.21 0.20 -6.16 16 5 C 0.26 7.36 5.83 38.75 0.23 7.59 16 6 N -0.68 -18.14 5.26 -303.03 -1.59 -19.73 16 7 C 0.52 18.42 7.44 87.66 0.65 19.07 16 8 O -0.53 -24.56 14.10 -2.97 -0.04 -24.60 16 9 C -0.11 -3.65 4.96 29.85 0.15 -3.50 16 10 C 0.05 2.24 1.24 -12.29 -0.02 2.22 16 11 H 0.03 1.61 4.59 -2.39 -0.01 1.59 16 12 C -0.46 -24.57 6.91 25.60 0.18 -24.40 16 13 H 0.04 2.47 8.06 -2.91 -0.02 2.45 16 14 C 0.03 1.78 5.47 84.65 0.46 2.24 16 15 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 16 Si 0.91 46.70 27.29 68.60 1.87 48.57 16 17 H -0.29 -15.46 7.11 99.48 0.71 -14.76 16 18 H -0.30 -15.31 7.11 99.48 0.71 -14.60 16 19 H -0.23 -10.68 4.88 99.48 0.49 -10.20 16 20 C -0.06 -2.42 4.77 -19.87 -0.09 -2.51 16 21 C -0.12 -4.12 8.90 22.27 0.20 -3.93 16 22 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 23 C -0.14 -3.81 10.05 22.27 0.22 -3.59 16 24 C -0.13 -3.73 10.05 22.27 0.22 -3.50 16 25 C -0.15 -5.54 9.17 22.27 0.20 -5.33 16 26 C -0.29 -8.35 9.96 22.72 0.23 -8.12 16 27 C 0.51 15.35 7.39 84.69 0.63 15.97 16 28 O -0.60 -22.03 16.61 -5.70 -0.09 -22.12 16 29 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.12 0.86 8.00 -2.39 -0.02 0.84 16 31 H 0.08 1.40 7.37 -2.39 -0.02 1.38 16 32 H 0.21 2.10 8.03 -2.91 -0.02 2.08 16 33 H 0.14 4.17 7.91 -2.91 -0.02 4.15 16 34 H 0.43 7.90 8.82 -92.71 -0.82 7.08 16 35 H 0.11 3.14 7.96 -2.39 -0.02 3.12 16 36 H 0.11 2.84 8.14 -2.38 -0.02 2.82 16 37 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 38 H 0.11 4.07 7.84 -2.91 -0.02 4.05 16 39 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 40 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.14 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.11 3.86 7.01 -2.91 -0.02 3.84 16 43 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 Total: -1.00 -82.72 363.34 4.28 -78.45 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.00 Total: 22.83 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 5.85 Total: -11.30 kcal Atomic # 7 Polarization: -88.51 SS G_CDS: -3.31 Total: -91.83 kcal Atomic # 8 Polarization: -46.58 SS G_CDS: -0.14 Total: -46.72 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.87 Total: 48.57 kcal Total: -82.72 4.28 -78.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001436286150.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.332 kcal (2) G-P(sol) polarization free energy of solvation -82.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds