Wall clock time and date at job start Tue Mar 31 2020 14:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35648 * 116.99572 * 2 1 4 4 C 1.39342 * 120.54324 * 0.02562 * 3 2 1 5 5 C 1.38305 * 118.43769 * 179.97438 * 4 3 2 6 6 C 1.38765 * 119.44556 * 359.97438 * 5 4 3 7 7 N 1.31373 * 121.06668 * 359.97438 * 6 5 4 8 8 C 1.32853 * 121.69864 * 0.02562 * 7 6 5 9 9 C 1.47830 * 119.78466 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00275 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99980 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99926 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46872 * 324.99719 * 12 11 9 14 14 C 1.52997 * 109.46717 * 204.99953 * 12 11 9 15 15 C 1.50704 * 109.47301 * 64.99902 * 14 12 11 16 16 H 1.08000 * 120.00208 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99970 * 179.97438 * 15 14 12 18 18 N 1.31520 * 120.00135 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47067 * 89.99546 * 19 17 15 21 21 H 1.48502 * 109.47259 * 209.99754 * 19 17 15 22 22 H 1.48506 * 109.46949 * 330.00035 * 19 17 15 23 23 C 1.50692 * 109.47395 * 84.99960 * 12 11 9 24 24 C 1.38238 * 120.00163 * 39.72661 * 23 12 11 25 25 C 1.38236 * 120.00300 * 179.79006 * 24 23 12 26 26 C 1.38242 * 119.99404 * 0.43763 * 25 24 23 27 27 C 1.38231 * 120.00268 * 359.81678 * 26 25 24 28 28 C 1.38234 * 119.99920 * 220.00046 * 23 12 11 29 29 H 1.09001 * 109.47468 * 59.99936 * 1 2 3 30 30 H 1.08998 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47214 * 299.99282 * 1 2 3 32 32 H 1.08002 * 120.78149 * 0.24702 * 4 3 2 33 33 H 1.07999 * 120.27217 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.46232 * 179.97438 * 6 5 4 35 35 H 0.97001 * 119.99924 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.47156 * 184.99756 * 14 12 11 37 37 H 1.09001 * 109.47373 * 304.99717 * 14 12 11 38 38 H 0.97000 * 119.99937 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99483 * 359.97438 * 24 23 12 40 40 H 1.07995 * 119.99995 * 180.27126 * 25 24 23 41 41 H 1.08001 * 119.99567 * 179.83491 * 26 25 24 42 42 H 1.07998 * 120.00011 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.00253 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9695 3.5928 0.0011 6 6 3.3571 3.6012 0.0016 7 7 4.0418 2.4800 0.0021 8 6 3.4409 1.2951 0.0016 9 6 4.2531 0.0599 0.0028 10 8 3.7075 -1.0263 0.0028 11 7 5.5986 0.1381 0.0038 12 6 6.4035 -1.0861 0.0044 13 1 5.8992 -1.8521 0.5935 14 6 7.7755 -0.7939 0.6150 15 6 7.6109 -0.4242 2.0667 16 1 6.6261 -0.3997 2.5094 17 6 8.7176 -0.1173 2.8297 18 7 9.9169 -0.1477 2.2908 19 14 8.5136 0.3402 4.6293 20 1 8.5870 -0.8863 5.4633 21 1 9.5960 1.2754 5.0281 22 1 7.1956 0.9952 4.8273 23 6 6.5770 -1.5739 -1.4108 24 6 6.7946 -0.6682 -2.4323 25 6 6.9582 -1.1160 -3.7299 26 6 6.8952 -2.4688 -4.0072 27 6 6.6724 -3.3740 -2.9866 28 6 6.5131 -2.9265 -1.6883 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2173 2.3527 0.0050 33 1 1.4193 4.5222 0.0019 34 1 3.8827 4.5447 0.0016 35 1 6.0341 1.0048 0.0034 36 1 8.4050 -1.6801 0.5350 37 1 8.2426 0.0331 0.0802 38 1 10.6954 0.0686 2.8275 39 1 6.8397 0.3890 -2.2161 40 1 7.1325 -0.4087 -4.5272 41 1 7.0203 -2.8184 -5.0214 42 1 6.6236 -4.4309 -3.2032 43 1 6.3391 -3.6338 -0.8909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458149262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:39 Heat of formation + Delta-G solvation = -11.444874 kcal Electronic energy + Delta-G solvation = -27286.815107 eV Core-core repulsion = 23490.370005 eV Total energy + Delta-G solvation = -3796.445101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.86606 -39.28509 -38.26600 -37.97301 -35.05498 -32.78822 -32.39688 -31.06440 -30.58952 -30.31790 -28.69583 -27.55393 -25.28836 -24.13716 -22.90585 -22.20710 -21.87011 -20.75319 -19.58646 -18.32459 -17.51384 -17.12957 -16.60806 -16.07048 -16.01255 -15.33651 -15.16091 -14.80771 -14.48972 -14.44335 -14.28322 -13.94263 -13.80966 -13.32798 -13.11935 -12.91561 -12.63116 -12.51465 -12.39823 -12.03375 -11.62276 -11.60025 -11.47535 -11.04887 -10.86242 -10.65871 -10.53917 -10.38438 -9.94523 -9.93015 -9.68898 -9.32135 -9.17978 -8.55097 -8.45110 -8.37427 -8.22792 -8.09536 -6.00937 -4.03314 0.68949 1.14983 1.86198 1.88866 3.07228 3.11481 3.33370 3.39629 3.44178 3.67006 4.03902 4.28019 4.37495 4.47073 4.47902 4.65716 4.88305 4.95064 4.95644 5.10147 5.31330 5.33506 5.35716 5.36031 5.43808 5.51448 5.63599 5.82001 5.83009 6.00052 6.02420 6.24764 6.27913 6.44253 6.52766 6.67138 6.92860 6.93430 7.03577 7.11859 7.21564 7.48901 7.58604 7.68589 7.78222 7.96182 8.30645 8.35992 8.88350 9.02081 9.61023 11.09774 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007651 B = 0.005229 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3658.688636 B = 5353.416115 C = 7731.332930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.270 6.270 3 C 0.132 3.868 4 C -0.179 4.179 5 C -0.115 4.115 6 C 0.057 3.943 7 N -0.414 5.414 8 C 0.056 3.944 9 C 0.565 3.435 10 O -0.526 6.526 11 N -0.681 5.681 12 C 0.183 3.817 13 H 0.088 0.912 14 C 0.024 3.976 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.070 4.070 24 C -0.106 4.106 25 C -0.126 4.126 26 C -0.136 4.136 27 C -0.124 4.124 28 C -0.107 4.107 29 H 0.054 0.946 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.410 0.590 36 H 0.035 0.965 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.458 5.068 -9.254 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.179 6.179 3 C 0.081 3.919 4 C -0.205 4.205 5 C -0.135 4.135 6 C -0.103 4.103 7 N -0.126 5.126 8 C -0.084 4.084 9 C 0.349 3.651 10 O -0.402 6.402 11 N -0.330 5.330 12 C 0.079 3.921 13 H 0.106 0.894 14 C -0.013 4.013 15 C -0.555 4.555 16 H 0.076 0.924 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.072 4.072 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.154 4.154 27 C -0.142 4.142 28 C -0.126 4.126 29 H 0.073 0.927 30 H 0.122 0.878 31 H 0.073 0.927 32 H 0.161 0.839 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.246 0.754 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.647 4.072 -9.194 18.600 hybrid contribution -1.010 1.011 1.039 1.767 sum -16.657 5.083 -8.156 19.231 Atomic orbital electron populations 1.23190 0.78956 1.04531 1.00943 1.86461 1.20526 1.24521 1.86436 1.20087 0.92455 0.85666 0.93685 1.21705 1.00855 0.91917 1.06060 1.22161 0.95827 0.98235 0.97246 1.22724 0.91276 0.96541 0.99803 1.67693 1.39807 0.97371 1.07724 1.20966 0.88608 0.93235 1.05567 1.17584 0.82786 0.86894 0.77836 1.90787 1.71847 1.27421 1.50178 1.45808 1.04670 1.10846 1.71667 1.20292 0.95134 0.86290 0.90367 0.89433 1.19392 0.88258 0.98147 0.95519 1.21136 0.93149 1.46393 0.94772 0.92424 1.24965 0.95256 0.95522 0.98339 1.69964 0.97938 1.49044 1.36249 0.86609 0.77723 0.78343 0.85438 1.20697 1.21272 1.19921 1.20552 0.96561 0.93513 0.96529 1.20946 0.99510 0.99616 0.92406 1.21034 1.01229 0.95583 0.96514 1.20981 1.02244 0.93526 0.98619 1.21023 1.00979 0.99080 0.93091 1.21013 0.99737 0.95319 0.96522 0.92713 0.87756 0.92668 0.83924 0.84219 0.81877 0.75382 0.94687 0.95607 0.92962 0.86452 0.86798 0.86922 0.86663 0.86156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.83 101.05 0.99 1.17 16 2 O -0.27 -4.12 8.56 -40.59 -0.35 -4.46 16 3 C 0.13 1.96 6.71 -38.55 -0.26 1.70 16 4 C -0.18 -1.90 9.13 -39.15 -0.36 -2.26 16 5 C -0.11 -1.08 10.10 -39.36 -0.40 -1.48 16 6 C 0.06 0.66 11.17 -17.55 -0.20 0.46 16 7 N -0.41 -6.49 9.54 -9.71 -0.09 -6.58 16 8 C 0.06 0.97 6.76 -82.88 -0.56 0.41 16 9 C 0.57 11.55 7.76 -12.34 -0.10 11.45 16 10 O -0.53 -11.95 14.80 -16.63 -0.25 -12.20 16 11 N -0.68 -13.92 4.01 -55.89 -0.22 -14.14 16 12 C 0.18 3.98 2.12 -69.09 -0.15 3.84 16 13 H 0.09 2.04 7.44 -51.93 -0.39 1.66 16 14 C 0.02 0.60 4.50 -27.88 -0.13 0.48 16 15 C -0.52 -14.22 8.84 -34.44 -0.30 -14.52 16 16 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 23 C -0.07 -1.39 4.91 -104.63 -0.51 -1.90 16 24 C -0.11 -1.93 9.33 -39.58 -0.37 -2.30 16 25 C -0.13 -1.99 10.05 -39.58 -0.40 -2.38 16 26 C -0.14 -2.03 10.05 -39.58 -0.40 -2.43 16 27 C -0.12 -1.95 10.05 -39.58 -0.40 -2.35 16 28 C -0.11 -1.96 9.67 -39.58 -0.38 -2.34 16 29 H 0.05 0.39 7.70 -51.93 -0.40 -0.01 16 30 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.41 7.69 -51.93 -0.40 0.01 16 32 H 0.14 1.05 6.46 -52.49 -0.34 0.71 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 35 H 0.41 8.17 7.93 -40.82 -0.32 7.85 16 36 H 0.03 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 2.06 7.71 -52.49 -0.40 1.65 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 43 H 0.12 2.09 8.04 -52.49 -0.42 1.67 16 LS Contribution 371.20 15.07 5.59 5.59 Total: -1.00 -34.11 371.20 -9.20 -43.31 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -5.60 Total: 8.08 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -4.00 Total: -10.83 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: 0.42 Total: -46.20 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: -0.59 Total: -16.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.11 -9.20 -43.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458149262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.868 kcal (2) G-P(sol) polarization free energy of solvation -34.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds