Wall clock time and date at job start Tue Mar 31 2020 14:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35648 * 116.99572 * 2 1 4 4 C 1.39342 * 120.54324 * 0.02562 * 3 2 1 5 5 C 1.38305 * 118.43769 * 179.97438 * 4 3 2 6 6 C 1.38765 * 119.44556 * 359.97438 * 5 4 3 7 7 N 1.31373 * 121.06668 * 359.97438 * 6 5 4 8 8 C 1.32853 * 121.69864 * 0.02562 * 7 6 5 9 9 C 1.47830 * 119.78466 * 180.02562 * 8 7 6 10 10 O 1.21552 * 120.00275 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99980 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99926 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.46872 * 324.99719 * 12 11 9 14 14 C 1.52997 * 109.46717 * 204.99953 * 12 11 9 15 15 C 1.50704 * 109.47301 * 64.99902 * 14 12 11 16 16 H 1.08000 * 120.00208 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99970 * 179.97438 * 15 14 12 18 18 N 1.31520 * 120.00135 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00072 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47067 * 89.99546 * 19 17 15 21 21 H 1.48502 * 109.47259 * 209.99754 * 19 17 15 22 22 H 1.48506 * 109.46949 * 330.00035 * 19 17 15 23 23 C 1.50692 * 109.47395 * 84.99960 * 12 11 9 24 24 C 1.38238 * 120.00163 * 39.72661 * 23 12 11 25 25 C 1.38236 * 120.00300 * 179.79006 * 24 23 12 26 26 C 1.38242 * 119.99404 * 0.43763 * 25 24 23 27 27 C 1.38231 * 120.00268 * 359.81678 * 26 25 24 28 28 C 1.38234 * 119.99920 * 220.00046 * 23 12 11 29 29 H 1.09001 * 109.47468 * 59.99936 * 1 2 3 30 30 H 1.08998 * 109.47136 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47214 * 299.99282 * 1 2 3 32 32 H 1.08002 * 120.78149 * 0.24702 * 4 3 2 33 33 H 1.07999 * 120.27217 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.46232 * 179.97438 * 6 5 4 35 35 H 0.97001 * 119.99924 * 359.97438 * 11 9 8 36 36 H 1.08999 * 109.47156 * 184.99756 * 14 12 11 37 37 H 1.09001 * 109.47373 * 304.99717 * 14 12 11 38 38 H 0.97000 * 119.99937 * 179.97438 * 18 17 15 39 39 H 1.08001 * 119.99483 * 359.97438 * 24 23 12 40 40 H 1.07995 * 119.99995 * 180.27126 * 25 24 23 41 41 H 1.08001 * 119.99567 * 179.83491 * 26 25 24 42 42 H 1.07998 * 120.00011 * 180.02562 * 27 26 25 43 43 H 1.08001 * 120.00253 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9695 3.5928 0.0011 6 6 3.3571 3.6012 0.0016 7 7 4.0418 2.4800 0.0021 8 6 3.4409 1.2951 0.0016 9 6 4.2531 0.0599 0.0028 10 8 3.7075 -1.0263 0.0028 11 7 5.5986 0.1381 0.0038 12 6 6.4035 -1.0861 0.0044 13 1 5.8992 -1.8521 0.5935 14 6 7.7755 -0.7939 0.6150 15 6 7.6109 -0.4242 2.0667 16 1 6.6261 -0.3997 2.5094 17 6 8.7176 -0.1173 2.8297 18 7 9.9169 -0.1477 2.2908 19 14 8.5136 0.3402 4.6293 20 1 8.5870 -0.8863 5.4633 21 1 9.5960 1.2754 5.0281 22 1 7.1956 0.9952 4.8273 23 6 6.5770 -1.5739 -1.4108 24 6 6.7946 -0.6682 -2.4323 25 6 6.9582 -1.1160 -3.7299 26 6 6.8952 -2.4688 -4.0072 27 6 6.6724 -3.3740 -2.9866 28 6 6.5131 -2.9265 -1.6883 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 0.2173 2.3527 0.0050 33 1 1.4193 4.5222 0.0019 34 1 3.8827 4.5447 0.0016 35 1 6.0341 1.0048 0.0034 36 1 8.4050 -1.6801 0.5350 37 1 8.2426 0.0331 0.0802 38 1 10.6954 0.0686 2.8275 39 1 6.8397 0.3890 -2.2161 40 1 7.1325 -0.4087 -4.5272 41 1 7.0203 -2.8184 -5.0214 42 1 6.6236 -4.4309 -3.2032 43 1 6.3391 -3.6338 -0.8909 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001458149262.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:38 Heat of formation + Delta-G solvation = -32.590742 kcal Electronic energy + Delta-G solvation = -27287.732060 eV Core-core repulsion = 23490.370005 eV Total energy + Delta-G solvation = -3797.362055 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.93778 -40.70949 -39.49621 -39.13282 -36.76684 -34.73370 -33.58158 -32.36383 -31.76202 -31.58335 -30.53154 -28.33751 -26.97912 -25.47945 -23.86364 -23.76743 -23.37064 -22.13483 -21.15256 -19.41076 -18.77578 -18.54875 -18.09851 -17.60307 -16.99356 -16.82521 -16.58439 -16.21189 -16.12113 -15.56486 -15.43897 -15.19887 -14.84046 -14.60056 -14.46606 -14.28540 -14.19635 -13.98067 -13.68846 -13.44931 -13.42443 -12.92576 -12.66433 -12.48543 -12.43149 -12.40162 -12.15633 -11.88902 -11.61038 -11.34450 -11.20563 -10.81736 -10.63482 -10.52652 -9.99287 -9.76513 -9.54349 -9.45989 -8.20821 -6.30806 -0.32658 0.24964 0.50309 0.55026 1.37354 1.37990 1.49397 1.84283 2.18483 2.28986 2.39205 2.86896 2.95859 3.12308 3.30432 3.62142 3.77975 3.97624 4.01928 4.02578 4.19814 4.23067 4.29185 4.31318 4.35291 4.42176 4.53486 4.63851 4.68937 4.74789 4.77868 4.92039 5.00720 5.11598 5.18958 5.26881 5.41110 5.44542 5.60289 5.60428 5.62809 5.76548 5.90245 6.15283 6.19736 6.24390 6.59753 6.80112 6.90035 7.32689 7.37405 8.90178 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.007651 B = 0.005229 C = 0.003621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3658.688636 B = 5353.416115 C = 7731.332930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.311 6.311 3 C 0.122 3.878 4 C -0.170 4.170 5 C -0.086 4.086 6 C 0.050 3.950 7 N -0.445 5.445 8 C 0.005 3.995 9 C 0.560 3.440 10 O -0.563 6.563 11 N -0.681 5.681 12 C 0.198 3.802 13 H 0.059 0.941 14 C 0.040 3.960 15 C -0.530 4.530 16 H 0.047 0.953 17 C 0.012 3.988 18 N -0.924 5.924 19 Si 0.957 3.043 20 H -0.275 1.275 21 H -0.276 1.276 22 H -0.272 1.272 23 C -0.098 4.098 24 C -0.123 4.123 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.121 4.121 28 C -0.131 4.131 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.183 0.817 33 H 0.193 0.807 34 H 0.195 0.805 35 H 0.409 0.591 36 H 0.008 0.992 37 H 0.009 0.991 38 H 0.265 0.735 39 H 0.112 0.888 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.147 0.853 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.706 7.164 -10.382 22.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.222 6.222 3 C 0.071 3.929 4 C -0.196 4.196 5 C -0.106 4.106 6 C -0.112 4.112 7 N -0.157 5.157 8 C -0.132 4.132 9 C 0.346 3.654 10 O -0.442 6.442 11 N -0.330 5.330 12 C 0.093 3.907 13 H 0.077 0.923 14 C 0.003 3.997 15 C -0.568 4.568 16 H 0.065 0.935 17 C -0.187 4.187 18 N -0.564 5.564 19 Si 0.782 3.218 20 H -0.200 1.200 21 H -0.201 1.201 22 H -0.197 1.197 23 C -0.099 4.099 24 C -0.142 4.142 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.139 4.139 28 C -0.150 4.150 29 H 0.097 0.903 30 H 0.128 0.872 31 H 0.094 0.906 32 H 0.200 0.800 33 H 0.210 0.790 34 H 0.211 0.789 35 H 0.245 0.755 36 H 0.026 0.974 37 H 0.028 0.972 38 H 0.074 0.926 39 H 0.130 0.870 40 H 0.164 0.836 41 H 0.172 0.828 42 H 0.165 0.835 43 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -17.902 6.153 -10.326 21.563 hybrid contribution -0.416 0.440 1.319 1.451 sum -18.318 6.593 -9.008 21.451 Atomic orbital electron populations 1.23523 0.76159 1.05787 1.03030 1.86401 1.23623 1.25608 1.86527 1.20265 0.91862 0.87066 0.93667 1.22180 1.02596 0.90528 1.04284 1.22740 0.94963 0.99782 0.93082 1.23431 0.92940 0.96217 0.98626 1.67568 1.41306 0.97939 1.08902 1.20458 0.89542 0.92410 1.10758 1.18186 0.82513 0.88132 0.76531 1.90727 1.72337 1.29228 1.51953 1.45713 1.05095 1.10057 1.72134 1.19804 0.92888 0.86273 0.91710 0.92315 1.19111 0.89839 0.96036 0.94741 1.21346 0.92820 1.46558 0.96045 0.93453 1.25768 0.94841 0.95291 1.02761 1.70071 0.98658 1.49720 1.37975 0.85569 0.77871 0.78300 0.80017 1.20049 1.20110 1.19668 1.20432 0.99217 0.94730 0.95553 1.21041 1.00464 0.99212 0.93449 1.21422 0.99858 0.96986 0.95971 1.21478 0.99908 0.92841 1.00267 1.21401 0.99522 1.01085 0.91902 1.21178 1.00980 0.94699 0.98128 0.90325 0.87200 0.90618 0.79965 0.79003 0.78861 0.75460 0.97379 0.97245 0.92622 0.86958 0.83643 0.82785 0.83479 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.27 16 2 O -0.31 -9.66 8.56 -68.64 -0.59 -10.24 16 3 C 0.12 3.61 6.71 22.94 0.15 3.77 16 4 C -0.17 -3.04 9.13 22.55 0.21 -2.83 16 5 C -0.09 -1.24 10.10 22.41 0.23 -1.01 16 6 C 0.05 1.04 11.17 84.89 0.95 1.99 16 7 N -0.45 -14.16 9.54 -184.63 -1.76 -15.92 16 8 C 0.00 0.17 6.76 41.93 0.28 0.45 16 9 C 0.56 24.85 7.76 86.78 0.67 25.52 16 10 O -0.56 -27.89 14.80 17.11 0.25 -27.64 16 11 N -0.68 -30.51 4.01 -449.01 -1.80 -32.31 16 12 C 0.20 9.48 2.12 44.24 0.09 9.58 16 13 H 0.06 3.08 7.44 -2.39 -0.02 3.06 16 14 C 0.04 2.18 4.50 29.85 0.13 2.32 16 15 C -0.53 -30.94 8.84 25.60 0.23 -30.71 16 16 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 17 C 0.01 0.70 5.46 84.65 0.46 1.16 16 18 N -0.92 -56.06 13.29 21.45 0.28 -55.78 16 19 Si 0.96 45.67 29.54 68.60 2.03 47.69 16 20 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 23 C -0.10 -4.17 4.91 -19.87 -0.10 -4.27 16 24 C -0.12 -4.67 9.33 22.27 0.21 -4.47 16 25 C -0.12 -3.80 10.05 22.27 0.22 -3.58 16 26 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 27 C -0.12 -3.72 10.05 22.27 0.22 -3.50 16 28 C -0.13 -5.06 9.67 22.27 0.22 -4.84 16 29 H 0.08 0.91 7.70 -2.39 -0.02 0.89 16 30 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.08 0.93 7.69 -2.39 -0.02 0.91 16 32 H 0.18 1.72 6.46 -2.91 -0.02 1.70 16 33 H 0.19 0.80 8.06 -2.91 -0.02 0.78 16 34 H 0.19 2.65 8.06 -2.91 -0.02 2.62 16 35 H 0.41 17.94 7.93 -92.71 -0.73 17.21 16 36 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 39 H 0.11 4.23 7.71 -2.91 -0.02 4.20 16 40 H 0.15 3.46 8.06 -2.91 -0.02 3.43 16 41 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 42 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 43 H 0.11 4.36 8.04 -2.91 -0.02 4.33 16 Total: -1.00 -81.65 371.20 4.23 -77.41 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.30 Total: 29.22 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: 5.52 Total: -12.43 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -3.28 Total: -104.01 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.33 Total: -37.88 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -81.65 4.23 -77.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458149262.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.824 kcal (2) G-P(sol) polarization free energy of solvation -81.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds