Wall clock time and date at job start Tue Mar 31 2020 14:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35675 * 116.99811 * 2 1 4 4 C 1.38921 * 119.68404 * 179.97438 * 3 2 1 5 5 C 1.38372 * 119.11465 * 180.27459 * 4 3 2 6 6 C 1.50704 * 120.76197 * 179.72062 * 5 4 3 7 7 C 1.52998 * 109.47107 * 89.99883 * 6 5 4 8 8 N 1.46497 * 109.46819 * 180.02562 * 7 6 5 9 9 C 1.34783 * 119.99832 * 179.97438 * 8 7 6 10 10 O 1.21585 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.47635 * 119.99772 * 180.02562 * 9 8 7 12 12 C 1.40012 * 119.90076 * 359.72377 * 11 9 8 13 13 C 1.36321 * 120.11140 * 179.71700 * 12 11 9 14 14 C 1.40888 * 119.88808 * 0.57887 * 13 12 11 15 15 C 1.41105 * 120.10312 * 179.67244 * 14 13 12 16 16 H 1.08004 * 119.99906 * 204.64251 * 15 14 13 17 17 C 1.40228 * 119.99998 * 24.65121 * 15 14 13 18 18 N 1.30648 * 119.99788 * 17.87634 * 17 15 14 19 19 Si 1.86802 * 119.99954 * 197.87184 * 17 15 14 20 20 H 1.48492 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46797 * 119.99789 * 19 17 15 22 22 H 1.48496 * 109.47169 * 239.99844 * 19 17 15 23 23 C 1.40897 * 119.79553 * 359.69574 * 14 13 12 24 24 C 1.36320 * 119.88917 * 0.02562 * 23 14 13 25 25 C 1.38838 * 118.48405 * 359.43609 * 5 4 3 26 26 C 1.38047 * 119.28497 * 0.56401 * 25 5 4 27 27 N 1.31965 * 120.83885 * 359.70306 * 26 25 5 28 28 H 1.09000 * 109.46582 * 60.00168 * 1 2 3 29 29 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47323 * 300.00438 * 1 2 3 31 31 H 1.08002 * 120.44416 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.46976 * 210.00410 * 6 5 4 33 33 H 1.09002 * 109.46691 * 329.99528 * 6 5 4 34 34 H 1.08997 * 109.47163 * 299.99964 * 7 6 5 35 35 H 1.08997 * 109.47201 * 60.00316 * 7 6 5 36 36 H 0.97006 * 120.00526 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.94397 * 0.02562 * 12 11 9 38 38 H 1.07990 * 120.05682 * 180.25608 * 13 12 11 39 39 H 0.97003 * 119.99634 * 180.02562 * 18 17 15 40 40 H 1.07992 * 120.05462 * 179.97438 * 23 14 13 41 41 H 1.08000 * 119.94598 * 179.97438 * 24 23 14 42 42 H 1.07998 * 120.35541 * 180.30603 * 25 5 4 43 43 H 1.07998 * 119.58149 * 179.72161 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0063 6 6 5.5512 2.6269 0.0134 7 6 6.0663 2.6689 -1.4266 8 7 7.5271 2.7790 -1.4197 9 6 8.2044 2.8320 -2.5837 10 8 7.6031 2.7881 -3.6395 11 6 9.6767 2.9424 -2.5767 12 6 10.3666 2.9976 -1.3596 13 6 11.7264 3.0936 -1.3481 14 6 12.4366 3.1497 -2.5636 15 6 13.8436 3.2562 -2.5569 16 1 14.3565 3.6877 -3.4038 17 6 14.5759 2.8015 -1.4508 18 7 14.0263 1.9798 -0.5966 19 14 16.3372 3.3704 -1.1990 20 1 16.7216 4.2921 -2.2980 21 1 16.4474 4.0787 0.1016 22 1 17.2426 2.1934 -1.1999 23 6 11.7375 3.0997 -3.7858 24 6 10.3781 2.9978 -3.7872 25 6 3.2505 3.6492 -0.0006 26 6 1.8771 3.5097 -0.0011 27 7 1.3185 2.3141 -0.0010 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0229 0.3696 0.0014 32 1 5.8439 3.5406 0.5309 33 1 5.9783 1.7657 0.5272 34 1 5.7736 1.7553 -1.9440 35 1 5.6391 3.5301 -1.9403 36 1 8.0070 2.8129 -0.5773 37 1 9.8210 2.9589 -0.4284 38 1 12.2580 3.1320 -0.4088 39 1 14.5328 1.6656 0.1687 40 1 12.2776 3.1428 -4.7200 41 1 9.8413 2.9598 -4.7236 42 1 3.6993 4.6315 -0.0014 43 1 1.2517 4.3902 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462029485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:46 Heat of formation + Delta-G solvation = -32.272788 kcal Electronic energy + Delta-G solvation = -25230.617818 eV Core-core repulsion = 21433.269550 eV Total energy + Delta-G solvation = -3797.348268 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.90457 -39.15305 -38.28772 -37.17255 -35.48522 -33.89261 -33.28118 -31.02529 -30.49446 -29.47913 -29.07901 -27.44953 -25.99366 -24.04827 -23.58123 -21.86552 -21.53660 -20.87814 -19.66961 -18.07931 -17.55196 -17.37936 -16.80846 -16.26329 -16.18583 -15.69799 -15.34318 -15.24793 -14.56065 -14.41312 -14.12320 -13.96270 -13.60821 -13.30298 -13.27912 -12.90995 -12.75226 -12.40452 -12.30289 -12.05598 -12.01948 -11.90687 -11.47414 -11.43709 -11.33523 -11.26330 -10.96036 -10.66694 -10.06490 -9.93761 -9.86930 -9.58808 -9.37330 -9.00002 -8.78502 -8.64487 -7.74414 -7.56543 -7.06106 -4.62430 0.88957 0.98091 2.20603 2.81051 2.88740 2.93620 2.99232 3.01657 3.46452 3.72086 3.72650 3.84720 4.04991 4.49573 4.54511 4.68103 4.84149 4.86434 4.92894 4.98910 5.02085 5.11802 5.31737 5.39017 5.49444 5.54774 5.64560 5.78212 5.80912 6.01448 6.09723 6.14671 6.18662 6.30113 6.74828 6.80632 6.88051 6.96440 7.02769 7.11202 7.41477 7.57986 7.62745 7.76434 7.84024 8.04950 8.19992 8.37776 8.61000 8.73088 9.04554 9.85901 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.001856 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.720474 B =15081.289489 C =15412.845423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.309 6.309 3 C 0.320 3.680 4 C -0.185 4.185 5 C 0.002 3.998 6 C -0.096 4.096 7 C 0.131 3.869 8 N -0.744 5.744 9 C 0.572 3.428 10 O -0.575 6.575 11 C -0.285 4.285 12 C -0.063 4.063 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.442 4.442 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.771 5.771 19 Si 0.913 3.087 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.271 1.271 23 C -0.238 4.238 24 C -0.022 4.022 25 C -0.204 4.204 26 C 0.139 3.861 27 N -0.545 5.545 28 H 0.058 0.942 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.398 0.602 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.286 0.714 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.139 0.861 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.488 0.398 7.334 18.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.216 6.216 3 C 0.141 3.859 4 C -0.205 4.205 5 C -0.006 4.006 6 C -0.133 4.133 7 C 0.007 3.993 8 N -0.397 5.397 9 C 0.367 3.633 10 O -0.457 6.457 11 C -0.289 4.289 12 C -0.082 4.082 13 C -0.197 4.197 14 C 0.124 3.876 15 C -0.469 4.469 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.394 5.394 19 Si 0.736 3.264 20 H -0.180 1.180 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.258 4.258 24 C -0.041 4.041 25 C -0.225 4.225 26 C -0.016 4.016 27 N -0.270 5.270 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.076 0.924 31 H 0.161 0.839 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.233 0.767 37 H 0.107 0.893 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.157 0.843 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -18.686 -0.144 6.799 19.885 hybrid contribution 1.565 0.291 0.688 1.734 sum -17.121 0.147 7.487 18.687 Atomic orbital electron populations 1.22846 0.77254 1.02915 1.02402 1.86248 1.22902 1.24601 1.87825 1.19804 0.89292 0.84692 0.92098 1.20987 0.91990 0.99271 1.08264 1.19930 0.95878 0.92059 0.92699 1.20872 0.89945 1.04499 0.98024 1.21067 0.81471 1.02286 0.94494 1.45888 1.06101 1.78194 1.09536 1.18591 0.88130 0.74216 0.82383 1.90641 1.70965 1.52838 1.31226 1.18883 0.89965 1.25489 0.94592 1.20468 0.94876 0.98290 0.94554 1.20972 0.92290 1.07735 0.98752 1.17805 0.93299 0.85344 0.91124 1.19886 0.91832 1.33261 1.01938 0.89655 1.26107 1.01496 0.92558 0.94563 1.69753 1.38869 1.20415 1.10411 0.86170 0.80783 0.79748 0.79656 1.18040 1.19381 1.19662 1.20719 0.93403 1.14507 0.97155 1.20372 0.93801 0.94183 0.95774 1.21947 0.94705 0.99605 1.06195 1.22370 0.92778 0.93582 0.92871 1.67300 1.41055 0.98888 1.19710 0.92303 0.88651 0.92366 0.83946 0.89364 0.89459 0.91774 0.91752 0.76681 0.89317 0.86190 0.90271 0.88370 0.88103 0.84280 0.82307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.31 -3.42 10.48 -18.73 -0.20 -3.62 16 3 C 0.32 3.71 7.49 -17.12 -0.13 3.58 16 4 C -0.18 -1.99 9.75 -39.28 -0.38 -2.37 16 5 C 0.00 0.02 5.17 -104.35 -0.54 -0.51 16 6 C -0.10 -0.91 5.50 -27.88 -0.15 -1.06 16 7 C 0.13 1.74 5.66 -4.04 -0.02 1.72 16 8 N -0.74 -11.83 5.50 -61.32 -0.34 -12.17 16 9 C 0.57 11.99 7.76 -12.42 -0.10 11.89 16 10 O -0.57 -13.69 16.32 5.29 0.09 -13.60 16 11 C -0.28 -6.41 5.89 -104.73 -0.62 -7.03 16 12 C -0.06 -1.35 9.47 -39.61 -0.38 -1.73 16 13 C -0.18 -4.29 8.64 -39.27 -0.34 -4.63 16 14 C 0.13 3.21 5.58 -106.80 -0.60 2.62 16 15 C -0.44 -10.86 9.04 -37.75 -0.34 -11.20 16 16 H 0.09 2.01 7.91 -52.48 -0.42 1.60 16 17 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 18 N -0.77 -18.22 10.95 55.56 0.61 -17.61 16 19 Si 0.91 17.03 29.60 -169.99 -5.03 12.00 16 20 H -0.26 -4.78 7.11 56.52 0.40 -4.37 16 21 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.60 16 23 C -0.24 -5.73 9.73 -39.27 -0.38 -6.11 16 24 C -0.02 -0.52 9.52 -39.60 -0.38 -0.90 16 25 C -0.20 -1.83 9.81 -39.43 -0.39 -2.21 16 26 C 0.14 1.27 11.18 -17.56 -0.20 1.07 16 27 N -0.55 -6.08 9.22 -13.33 -0.12 -6.20 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.09 0.72 8.10 -51.93 -0.42 0.30 16 33 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.40 5.48 6.47 -40.82 -0.26 5.22 16 37 H 0.09 1.59 6.37 -52.49 -0.33 1.26 16 38 H 0.12 2.92 6.15 -52.49 -0.32 2.59 16 39 H 0.29 6.04 8.29 -40.82 -0.34 5.71 16 40 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 41 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 42 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 371.00 15.07 5.59 5.59 Total: -1.00 -30.25 371.00 -8.89 -39.14 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: -5.51 Total: 10.36 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -3.97 Total: -13.89 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.15 Total: -35.97 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.11 Total: -17.22 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.25 -8.89 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462029485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.865 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds