Wall clock time and date at job start Tue Mar 31 2020 14:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35675 * 116.99811 * 2 1 4 4 C 1.38921 * 119.68404 * 179.97438 * 3 2 1 5 5 C 1.38372 * 119.11465 * 180.27459 * 4 3 2 6 6 C 1.50704 * 120.76197 * 179.72062 * 5 4 3 7 7 C 1.52998 * 109.47107 * 89.99883 * 6 5 4 8 8 N 1.46497 * 109.46819 * 180.02562 * 7 6 5 9 9 C 1.34783 * 119.99832 * 179.97438 * 8 7 6 10 10 O 1.21585 * 119.99988 * 359.97438 * 9 8 7 11 11 C 1.47635 * 119.99772 * 180.02562 * 9 8 7 12 12 C 1.40012 * 119.90076 * 359.72377 * 11 9 8 13 13 C 1.36321 * 120.11140 * 179.71700 * 12 11 9 14 14 C 1.40888 * 119.88808 * 0.57887 * 13 12 11 15 15 C 1.41105 * 120.10312 * 179.67244 * 14 13 12 16 16 H 1.08004 * 119.99906 * 204.64251 * 15 14 13 17 17 C 1.40228 * 119.99998 * 24.65121 * 15 14 13 18 18 N 1.30648 * 119.99788 * 17.87634 * 17 15 14 19 19 Si 1.86802 * 119.99954 * 197.87184 * 17 15 14 20 20 H 1.48492 * 109.47095 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46797 * 119.99789 * 19 17 15 22 22 H 1.48496 * 109.47169 * 239.99844 * 19 17 15 23 23 C 1.40897 * 119.79553 * 359.69574 * 14 13 12 24 24 C 1.36320 * 119.88917 * 0.02562 * 23 14 13 25 25 C 1.38838 * 118.48405 * 359.43609 * 5 4 3 26 26 C 1.38047 * 119.28497 * 0.56401 * 25 5 4 27 27 N 1.31965 * 120.83885 * 359.70306 * 26 25 5 28 28 H 1.09000 * 109.46582 * 60.00168 * 1 2 3 29 29 H 1.08998 * 109.47313 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47323 * 300.00438 * 1 2 3 31 31 H 1.08002 * 120.44416 * 359.97438 * 4 3 2 32 32 H 1.09000 * 109.46976 * 210.00410 * 6 5 4 33 33 H 1.09002 * 109.46691 * 329.99528 * 6 5 4 34 34 H 1.08997 * 109.47163 * 299.99964 * 7 6 5 35 35 H 1.08997 * 109.47201 * 60.00316 * 7 6 5 36 36 H 0.97006 * 120.00526 * 0.02562 * 8 7 6 37 37 H 1.08002 * 119.94397 * 0.02562 * 12 11 9 38 38 H 1.07990 * 120.05682 * 180.25608 * 13 12 11 39 39 H 0.97003 * 119.99634 * 180.02562 * 18 17 15 40 40 H 1.07992 * 120.05462 * 179.97438 * 23 14 13 41 41 H 1.08000 * 119.94598 * 179.97438 * 24 23 14 42 42 H 1.07998 * 120.35541 * 180.30603 * 25 5 4 43 43 H 1.07998 * 119.58149 * 179.72161 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5131 0.0063 6 6 5.5512 2.6269 0.0134 7 6 6.0663 2.6689 -1.4266 8 7 7.5271 2.7790 -1.4197 9 6 8.2044 2.8320 -2.5837 10 8 7.6031 2.7881 -3.6395 11 6 9.6767 2.9424 -2.5767 12 6 10.3666 2.9976 -1.3596 13 6 11.7264 3.0936 -1.3481 14 6 12.4366 3.1497 -2.5636 15 6 13.8436 3.2562 -2.5569 16 1 14.3565 3.6877 -3.4038 17 6 14.5759 2.8015 -1.4508 18 7 14.0263 1.9798 -0.5966 19 14 16.3372 3.3704 -1.1990 20 1 16.7216 4.2921 -2.2980 21 1 16.4474 4.0787 0.1016 22 1 17.2426 2.1934 -1.1999 23 6 11.7375 3.0997 -3.7858 24 6 10.3781 2.9978 -3.7872 25 6 3.2505 3.6492 -0.0006 26 6 1.8771 3.5097 -0.0011 27 7 1.3185 2.3141 -0.0010 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0229 0.3696 0.0014 32 1 5.8439 3.5406 0.5309 33 1 5.9783 1.7657 0.5272 34 1 5.7736 1.7553 -1.9440 35 1 5.6391 3.5301 -1.9403 36 1 8.0070 2.8129 -0.5773 37 1 9.8210 2.9589 -0.4284 38 1 12.2580 3.1320 -0.4088 39 1 14.5328 1.6656 0.1687 40 1 12.2776 3.1428 -4.7200 41 1 9.8413 2.9598 -4.7236 42 1 3.6993 4.6315 -0.0014 43 1 1.2517 4.3902 -0.0020 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462029485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:45 Heat of formation + Delta-G solvation = -51.026214 kcal Electronic energy + Delta-G solvation = -25231.431027 eV Core-core repulsion = 21433.269550 eV Total energy + Delta-G solvation = -3798.161477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.65477 -40.75553 -39.12867 -38.84095 -36.64237 -35.65988 -34.42007 -32.16969 -31.71015 -31.28764 -30.21453 -28.18656 -27.60307 -25.14778 -24.37706 -23.42965 -22.78069 -22.31845 -21.24904 -19.35655 -18.94491 -18.33050 -18.10795 -17.31017 -17.02237 -16.90664 -16.78747 -16.35138 -15.74057 -15.57432 -15.43486 -15.20571 -14.99750 -14.53430 -14.51848 -14.36154 -13.89694 -13.75774 -13.63618 -13.23529 -13.12829 -13.07266 -12.84355 -12.71865 -12.61293 -12.37310 -12.20835 -12.14948 -11.75401 -11.35994 -11.11551 -10.82595 -10.67905 -10.56623 -10.08254 -9.55725 -9.51077 -9.39185 -8.78746 -6.47172 0.14720 0.22281 0.45175 1.16614 1.39546 1.43035 1.56234 2.10738 2.13226 2.18791 2.37929 2.76548 2.79515 3.35746 3.70331 3.73204 3.92151 3.96783 4.14052 4.14887 4.32439 4.34465 4.37359 4.41442 4.43463 4.45894 4.56099 4.71265 4.76838 4.87971 4.93309 4.93980 5.02692 5.05725 5.17519 5.31588 5.37211 5.47458 5.55404 5.60742 5.83778 5.95815 6.00833 6.23338 6.24295 6.55381 6.72336 6.78472 6.83888 6.90418 7.45154 8.16636 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.026642 B = 0.001856 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.720474 B =15081.289489 C =15412.845423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.326 6.326 3 C 0.299 3.701 4 C -0.198 4.198 5 C -0.004 4.004 6 C -0.082 4.082 7 C 0.132 3.868 8 N -0.723 5.723 9 C 0.571 3.429 10 O -0.608 6.608 11 C -0.293 4.293 12 C -0.052 4.052 13 C -0.198 4.198 14 C 0.100 3.900 15 C -0.473 4.473 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.797 5.797 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.259 1.259 22 H -0.265 1.265 23 C -0.253 4.253 24 C -0.035 4.035 25 C -0.201 4.201 26 C 0.133 3.867 27 N -0.560 5.560 28 H 0.054 0.946 29 H 0.120 0.880 30 H 0.058 0.942 31 H 0.145 0.855 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.050 0.950 35 H 0.060 0.940 36 H 0.411 0.589 37 H 0.129 0.871 38 H 0.115 0.885 39 H 0.297 0.703 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.163 0.837 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.709 1.130 9.158 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.233 6.233 3 C 0.121 3.879 4 C -0.218 4.218 5 C -0.012 4.012 6 C -0.119 4.119 7 C 0.008 3.992 8 N -0.376 5.376 9 C 0.365 3.635 10 O -0.493 6.493 11 C -0.297 4.297 12 C -0.071 4.071 13 C -0.217 4.217 14 C 0.096 3.904 15 C -0.500 4.500 16 H 0.102 0.898 17 C -0.181 4.181 18 N -0.421 5.421 19 Si 0.807 3.193 20 H -0.181 1.181 21 H -0.183 1.183 22 H -0.189 1.189 23 C -0.273 4.273 24 C -0.054 4.054 25 C -0.221 4.221 26 C -0.022 4.022 27 N -0.285 5.285 28 H 0.073 0.927 29 H 0.138 0.862 30 H 0.077 0.923 31 H 0.163 0.837 32 H 0.129 0.871 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.249 0.751 37 H 0.147 0.853 38 H 0.133 0.867 39 H 0.108 0.892 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.181 0.819 43 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -18.938 0.579 8.664 20.834 hybrid contribution 1.487 0.046 0.115 1.493 sum -17.451 0.625 8.779 19.545 Atomic orbital electron populations 1.23026 0.75888 1.04515 1.02208 1.86220 1.24394 1.24785 1.87937 1.20041 0.89803 0.85047 0.93000 1.21152 0.91997 0.99968 1.08725 1.20020 0.96108 0.92119 0.92972 1.20774 0.89528 1.06223 0.95406 1.21178 0.79457 1.01418 0.97148 1.45695 1.07361 1.75982 1.08530 1.18405 0.87599 0.74275 0.83249 1.90624 1.71350 1.54531 1.32782 1.19174 0.91259 1.24750 0.94561 1.20753 0.94220 0.96246 0.95852 1.21021 0.93319 1.09220 0.98136 1.18166 0.94151 0.86134 0.91917 1.20129 0.92105 1.34612 1.03186 0.89810 1.26908 1.05527 0.91988 0.93646 1.69763 1.40775 1.20647 1.10893 0.85077 0.75324 0.79275 0.79666 1.18145 1.18349 1.18925 1.20844 0.93826 1.15273 0.97316 1.20524 0.93795 0.94532 0.96564 1.22257 0.94659 1.00334 1.04885 1.22934 0.93536 0.93822 0.91911 1.67337 1.41565 0.99449 1.20105 0.92679 0.86220 0.92307 0.83694 0.87149 0.88315 0.93142 0.92179 0.75129 0.85350 0.86711 0.89162 0.87966 0.88102 0.81921 0.79437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.38 113.37 1.18 1.75 16 2 O -0.33 -7.17 10.48 -89.93 -0.94 -8.11 16 3 C 0.30 6.81 7.49 84.79 0.63 7.44 16 4 C -0.20 -4.10 9.75 22.47 0.22 -3.88 16 5 C 0.00 -0.07 5.17 -19.69 -0.10 -0.17 16 6 C -0.08 -1.31 5.50 29.85 0.16 -1.15 16 7 C 0.13 3.23 5.66 86.38 0.49 3.72 16 8 N -0.72 -21.41 5.50 -466.18 -2.57 -23.98 16 9 C 0.57 23.39 7.76 86.72 0.67 24.07 16 10 O -0.61 -28.89 16.32 -3.98 -0.06 -28.95 16 11 C -0.29 -13.06 5.89 -19.93 -0.12 -13.18 16 12 C -0.05 -2.18 9.47 22.25 0.21 -1.97 16 13 C -0.20 -9.51 8.64 22.47 0.19 -9.32 16 14 C 0.10 5.11 5.58 -21.28 -0.12 5.00 16 15 C -0.47 -23.67 9.04 23.46 0.21 -23.46 16 16 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 17 C 0.04 1.76 5.14 85.35 0.44 2.19 16 18 N -0.80 -37.42 10.95 21.87 0.24 -37.18 16 19 Si 0.99 34.27 29.60 68.60 2.03 36.30 16 20 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 21 H -0.26 -8.55 7.11 99.48 0.71 -7.84 16 22 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 23 C -0.25 -12.50 9.73 22.47 0.22 -12.29 16 24 C -0.03 -1.67 9.52 22.25 0.21 -1.46 16 25 C -0.20 -3.08 9.81 22.37 0.22 -2.86 16 26 C 0.13 2.15 11.18 84.63 0.95 3.09 16 27 N -0.56 -11.91 9.22 -308.95 -2.85 -14.76 16 28 H 0.05 0.85 8.10 -2.39 -0.02 0.83 16 29 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 32 H 0.11 1.33 8.10 -2.39 -0.02 1.31 16 33 H 0.10 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.41 9.98 6.47 -92.70 -0.60 9.38 16 37 H 0.13 4.23 6.37 -2.91 -0.02 4.21 16 38 H 0.12 5.58 6.15 -2.92 -0.02 5.56 16 39 H 0.30 12.30 8.29 -92.71 -0.77 11.54 16 40 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 41 H 0.10 4.72 7.63 -2.91 -0.02 4.69 16 42 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 43 H 0.19 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -66.60 371.00 1.96 -64.64 By element: Atomic # 1 Polarization: 34.07 SS G_CDS: 0.44 Total: 34.51 kcal Atomic # 6 Polarization: -28.14 SS G_CDS: 5.67 Total: -22.46 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -5.17 Total: -75.91 kcal Atomic # 8 Polarization: -36.06 SS G_CDS: -1.01 Total: -37.07 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Total: -66.60 1.96 -64.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462029485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.613 kcal (2) G-P(sol) polarization free energy of solvation -66.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds