Wall clock time and date at job start Tue Mar 31 2020 14:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46991 * 57.49605 * 3 2 1 5 5 C 1.42897 * 113.99810 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47208 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47268 * 67.43732 * 6 5 4 8 8 C 1.46499 * 120.00183 * 270.74848 * 7 6 5 9 9 C 1.34769 * 120.00017 * 90.74595 * 7 6 5 10 10 O 1.21671 * 120.00388 * 359.96158 * 9 7 6 11 11 C 1.46890 * 120.00123 * 179.97438 * 9 7 6 12 12 C 1.36121 * 125.43684 * 339.87846 * 11 9 7 13 13 C 1.41707 * 107.74719 * 180.27732 * 12 11 9 14 14 C 1.40023 * 133.34837 * 179.77962 * 13 12 11 15 15 C 1.36579 * 119.82799 * 179.97438 * 14 13 12 16 16 C 1.38848 * 120.60190 * 359.96060 * 15 14 13 17 17 C 1.37850 * 120.63371 * 0.02562 * 16 15 14 18 18 C 1.39089 * 119.81078 * 0.02562 * 17 16 15 19 19 N 1.37839 * 133.15626 * 180.02562 * 18 17 16 20 20 C 1.36887 * 125.62700 * 359.97212 * 19 18 17 21 21 H 1.07992 * 120.00631 * 222.51014 * 20 19 18 22 22 C 1.39019 * 119.99672 * 42.50635 * 20 19 18 23 23 N 1.31341 * 119.99805 * 199.51491 * 22 20 19 24 24 Si 1.86807 * 119.99849 * 19.51591 * 22 20 19 25 25 H 1.48494 * 109.46722 * 264.34163 * 24 22 20 26 26 H 1.48499 * 109.46858 * 24.33983 * 24 22 20 27 27 H 1.48497 * 109.46715 * 144.33997 * 24 22 20 28 28 H 4.38447 * 5.44463 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46966 * 297.49873 * 3 2 1 30 30 H 1.08993 * 109.46995 * 177.49867 * 3 2 1 31 31 H 1.09002 * 109.47394 * 60.00086 * 5 4 3 32 32 H 1.09008 * 109.47224 * 299.99830 * 5 4 3 33 33 H 1.09000 * 109.46587 * 307.43564 * 6 5 4 34 34 H 1.08998 * 109.47130 * 187.44200 * 6 5 4 35 35 H 1.09000 * 109.47086 * 262.12404 * 8 7 6 36 36 H 1.09006 * 109.47184 * 22.12676 * 8 7 6 37 37 H 1.09004 * 109.47384 * 142.12061 * 8 7 6 38 38 H 1.07994 * 126.12744 * 0.02562 * 12 11 9 39 39 H 1.08000 * 120.08085 * 359.97438 * 14 13 12 40 40 H 1.08006 * 119.69479 * 179.97438 * 15 14 13 41 41 H 1.07997 * 119.68628 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.09154 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99714 * 174.99389 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.7231 -1.1363 5 6 4.5471 -0.7836 -1.2311 6 6 4.9421 -1.5772 -2.4782 7 7 4.5562 -0.8278 -3.6764 8 6 3.2254 -1.0139 -4.2598 9 6 5.4255 0.0328 -4.2419 10 8 6.5306 0.1880 -3.7570 11 6 5.0389 0.7838 -5.4437 12 6 4.0329 0.4456 -6.2960 13 6 3.9916 1.4202 -7.3239 14 6 3.1855 1.5894 -8.4562 15 6 3.3905 2.6573 -9.2827 16 6 4.3920 3.5797 -9.0105 17 6 5.1982 3.4346 -7.9018 18 6 5.0092 2.3545 -7.0460 19 7 5.6368 1.9481 -5.8880 20 6 6.6824 2.5894 -5.2805 21 1 7.5115 2.0190 -4.8885 22 6 6.6772 3.9750 -5.1681 23 7 7.8002 4.6204 -4.9505 24 14 5.0730 4.9189 -5.3267 25 1 4.9176 5.3997 -6.7230 26 1 3.9375 4.0265 -4.9812 27 1 5.0888 6.0806 -4.4018 28 1 -1.0499 -0.0003 -0.0001 29 1 3.0095 -0.4737 0.9116 30 1 3.0088 1.0274 -0.0448 31 1 4.9498 -1.2744 -0.3450 32 1 4.9499 0.2269 -1.3013 33 1 4.4322 -2.5406 -2.4722 34 1 6.0203 -1.7368 -2.4809 35 1 3.2879 -1.7167 -5.0907 36 1 2.5480 -1.4070 -3.5016 37 1 2.8499 -0.0565 -4.6212 38 1 3.3851 -0.4139 -6.2073 39 1 2.4037 0.8773 -8.6754 40 1 2.7677 2.7855 -10.1557 41 1 4.5409 4.4188 -9.6738 42 1 5.9748 4.1570 -7.6987 43 1 7.8088 5.5903 -4.9443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001522888745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:47 Heat of formation + Delta-G solvation = 65.627003 kcal Electronic energy + Delta-G solvation = -27648.014989 eV Core-core repulsion = 23854.911975 eV Total energy + Delta-G solvation = -3793.103014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84154 -39.12036 -37.93497 -36.11764 -35.20606 -33.65301 -33.28944 -31.51019 -30.38004 -29.22146 -28.05659 -27.06450 -26.21394 -24.83633 -23.66671 -22.02080 -20.99822 -20.00811 -19.00826 -18.59423 -17.99663 -16.84302 -16.54073 -15.97880 -15.80813 -15.65223 -15.49966 -14.97622 -14.66112 -14.34471 -14.02124 -13.69212 -13.31017 -13.15784 -13.00667 -12.71809 -12.52459 -12.49707 -12.38850 -12.20026 -12.14006 -11.51817 -11.39782 -11.15393 -10.91327 -10.87229 -10.70197 -10.63173 -10.43899 -10.19086 -9.84858 -9.67113 -9.42796 -9.17618 -8.63131 -8.33368 -7.33674 -6.93526 -6.80989 -4.44931 1.63148 2.36194 2.51050 2.64363 2.85528 3.04761 3.12603 3.22396 3.24403 3.76935 3.91732 4.05517 4.36485 4.41850 4.63016 4.83775 5.00730 5.09909 5.15641 5.24957 5.30662 5.37476 5.54656 5.61147 5.72066 5.73185 5.74929 5.77140 5.88523 5.94614 6.13263 6.15948 6.25086 6.44679 6.60058 6.71164 6.83133 6.87165 7.01788 7.23386 7.28560 7.36310 7.39708 7.61002 7.64825 7.81462 7.95819 8.28969 8.72988 8.84235 9.10087 10.20560 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.004300 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.596186 B = 6509.662531 C = 6978.054824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.187 4.187 3 C 0.171 3.829 4 O -0.378 6.378 5 C 0.043 3.957 6 C 0.127 3.873 7 N -0.610 5.610 8 C 0.076 3.924 9 C 0.586 3.414 10 O -0.529 6.529 11 C -0.014 4.014 12 C -0.211 4.211 13 C -0.120 4.120 14 C -0.082 4.082 15 C -0.156 4.156 16 C -0.138 4.138 17 C -0.096 4.096 18 C 0.049 3.951 19 N -0.249 5.249 20 C -0.336 4.336 21 H 0.133 0.867 22 C 0.080 3.920 23 N -0.825 5.825 24 Si 0.868 3.132 25 H -0.244 1.244 26 H -0.256 1.256 27 H -0.282 1.282 28 H 0.221 0.779 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.118 0.882 43 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 -8.472 4.512 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.187 4.187 3 C 0.095 3.905 4 O -0.298 6.298 5 C -0.034 4.034 6 C 0.004 3.996 7 N -0.344 5.344 8 C -0.066 4.066 9 C 0.377 3.623 10 O -0.405 6.405 11 C -0.131 4.131 12 C -0.237 4.237 13 C -0.125 4.125 14 C -0.101 4.101 15 C -0.176 4.176 16 C -0.158 4.158 17 C -0.116 4.116 18 C -0.065 4.065 19 N 0.090 4.910 20 C -0.464 4.464 21 H 0.151 0.849 22 C -0.133 4.133 23 N -0.454 5.454 24 Si 0.692 3.308 25 H -0.169 1.169 26 H -0.179 1.179 27 H -0.208 1.208 28 H 0.238 0.762 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.164 0.836 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -10.512 -8.116 4.966 14.179 hybrid contribution -0.664 0.823 0.270 1.091 sum -11.176 -7.294 5.237 14.336 Atomic orbital electron populations 1.24932 0.95856 1.00288 0.98831 1.22602 0.93932 1.00747 1.01410 1.19061 0.84630 0.97103 0.89724 1.87928 1.21806 1.74899 1.45197 1.23122 0.80367 1.01461 0.98454 1.21403 1.01807 0.94020 0.82411 1.47369 1.15361 1.43391 1.28328 1.22282 0.83312 1.02832 0.98203 1.17252 0.83912 0.78624 0.82522 1.90785 1.21101 1.64604 1.64011 1.19691 0.98517 0.96239 0.98609 1.21054 1.01978 1.02683 0.97995 1.17978 0.99378 0.97277 0.97876 1.20125 0.98575 0.97702 0.93711 1.20341 1.00250 0.96593 1.00370 1.20538 0.97612 1.00093 0.97588 1.20227 1.00564 0.96392 0.94419 1.18370 0.99152 0.99075 0.89863 1.40210 1.21095 1.15942 1.13794 1.19677 0.97553 0.91016 1.38171 0.84932 1.25519 0.97944 0.96548 0.93323 1.69646 1.26181 1.09916 1.39667 0.87008 0.83514 0.80272 0.79993 1.16894 1.17919 1.20822 0.76247 0.91004 0.90813 0.92201 0.92027 0.89813 0.88080 0.92775 0.90982 0.89659 0.83624 0.87281 0.87392 0.87071 0.86448 0.90314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 19.25 29.55 0.57 -1.30 16 2 C -0.19 -2.26 13.73 -37.12 -0.51 -2.77 16 3 C 0.17 1.95 6.41 34.37 0.22 2.17 16 4 O -0.38 -5.03 9.32 -35.23 -0.33 -5.36 16 5 C 0.04 0.55 6.27 37.16 0.23 0.79 16 6 C 0.13 1.69 5.77 -4.04 -0.02 1.67 16 7 N -0.61 -10.13 2.86 -183.05 -0.52 -10.65 16 8 C 0.08 1.06 8.52 59.85 0.51 1.57 16 9 C 0.59 12.72 7.56 -12.76 -0.10 12.62 16 10 O -0.53 -13.07 14.78 5.21 0.08 -12.99 16 11 C -0.01 -0.32 6.46 -82.24 -0.53 -0.85 16 12 C -0.21 -4.28 8.56 -39.02 -0.33 -4.61 16 13 C -0.12 -2.61 6.16 -106.89 -0.66 -3.26 16 14 C -0.08 -1.52 10.06 -39.51 -0.40 -1.92 16 15 C -0.16 -2.77 9.97 -39.96 -0.40 -3.17 16 16 C -0.14 -2.67 10.02 -39.50 -0.40 -3.06 16 17 C -0.10 -2.20 6.77 -39.41 -0.27 -2.47 16 18 C 0.05 1.19 5.17 -83.84 -0.43 0.76 16 19 N -0.25 -6.49 2.41 -56.08 -0.14 -6.63 16 20 C -0.34 -9.51 9.37 -15.01 -0.14 -9.65 16 21 H 0.13 4.11 7.06 -52.49 -0.37 3.74 16 22 C 0.08 2.19 4.91 -17.47 -0.09 2.11 16 23 N -0.83 -22.85 13.95 55.50 0.77 -22.08 16 24 Si 0.87 21.07 24.28 -169.99 -4.13 16.95 16 25 H -0.24 -5.57 5.60 56.52 0.32 -5.25 16 26 H -0.26 -6.56 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 28 H 0.22 1.39 7.80 -54.09 -0.42 0.97 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.94 8.14 -51.92 -0.42 0.51 16 33 H 0.08 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.10 1.39 7.40 -51.93 -0.38 1.01 16 35 H 0.05 0.66 7.06 -51.93 -0.37 0.29 16 36 H 0.07 0.89 7.26 -51.93 -0.38 0.51 16 37 H 0.08 1.32 5.66 -51.93 -0.29 1.03 16 38 H 0.15 2.38 4.75 -52.49 -0.25 2.13 16 39 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 41 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.12 2.76 5.82 -52.49 -0.31 2.46 16 43 H 0.29 7.22 8.31 -40.82 -0.34 6.89 16 LS Contribution 358.29 15.07 5.40 5.40 Total: -1.00 -32.89 358.29 -6.97 -39.86 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -5.37 Total: 6.90 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -2.74 Total: -11.40 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.12 Total: -39.36 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.25 Total: -18.35 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.13 Total: 16.95 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.89 -6.97 -39.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522888745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.489 kcal (2) G-P(sol) polarization free energy of solvation -32.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds