Wall clock time and date at job start Tue Mar 31 2020 14:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 O 1.42902 * 109.46991 * 57.49605 * 3 2 1 5 5 C 1.42897 * 113.99810 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47208 * 180.02562 * 5 4 3 7 7 N 1.46495 * 109.47268 * 67.43732 * 6 5 4 8 8 C 1.46499 * 120.00183 * 270.74848 * 7 6 5 9 9 C 1.34769 * 120.00017 * 90.74595 * 7 6 5 10 10 O 1.21671 * 120.00388 * 359.96158 * 9 7 6 11 11 C 1.46890 * 120.00123 * 179.97438 * 9 7 6 12 12 C 1.36121 * 125.43684 * 339.87846 * 11 9 7 13 13 C 1.41707 * 107.74719 * 180.27732 * 12 11 9 14 14 C 1.40023 * 133.34837 * 179.77962 * 13 12 11 15 15 C 1.36579 * 119.82799 * 179.97438 * 14 13 12 16 16 C 1.38848 * 120.60190 * 359.96060 * 15 14 13 17 17 C 1.37850 * 120.63371 * 0.02562 * 16 15 14 18 18 C 1.39089 * 119.81078 * 0.02562 * 17 16 15 19 19 N 1.37839 * 133.15626 * 180.02562 * 18 17 16 20 20 C 1.36887 * 125.62700 * 359.97212 * 19 18 17 21 21 H 1.07992 * 120.00631 * 222.51014 * 20 19 18 22 22 C 1.39019 * 119.99672 * 42.50635 * 20 19 18 23 23 N 1.31341 * 119.99805 * 199.51491 * 22 20 19 24 24 Si 1.86807 * 119.99849 * 19.51591 * 22 20 19 25 25 H 1.48494 * 109.46722 * 264.34163 * 24 22 20 26 26 H 1.48499 * 109.46858 * 24.33983 * 24 22 20 27 27 H 1.48497 * 109.46715 * 144.33997 * 24 22 20 28 28 H 4.38447 * 5.44463 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46966 * 297.49873 * 3 2 1 30 30 H 1.08993 * 109.46995 * 177.49867 * 3 2 1 31 31 H 1.09002 * 109.47394 * 60.00086 * 5 4 3 32 32 H 1.09008 * 109.47224 * 299.99830 * 5 4 3 33 33 H 1.09000 * 109.46587 * 307.43564 * 6 5 4 34 34 H 1.08998 * 109.47130 * 187.44200 * 6 5 4 35 35 H 1.09000 * 109.47086 * 262.12404 * 8 7 6 36 36 H 1.09006 * 109.47184 * 22.12676 * 8 7 6 37 37 H 1.09004 * 109.47384 * 142.12061 * 8 7 6 38 38 H 1.07994 * 126.12744 * 0.02562 * 12 11 9 39 39 H 1.08000 * 120.08085 * 359.97438 * 14 13 12 40 40 H 1.08006 * 119.69479 * 179.97438 * 15 14 13 41 41 H 1.07997 * 119.68628 * 180.02562 * 16 15 14 42 42 H 1.07995 * 120.09154 * 179.97438 * 17 16 15 43 43 H 0.97001 * 119.99714 * 174.99389 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1226 -0.7231 -1.1363 5 6 4.5471 -0.7836 -1.2311 6 6 4.9421 -1.5772 -2.4782 7 7 4.5562 -0.8278 -3.6764 8 6 3.2254 -1.0139 -4.2598 9 6 5.4255 0.0328 -4.2419 10 8 6.5306 0.1880 -3.7570 11 6 5.0389 0.7838 -5.4437 12 6 4.0329 0.4456 -6.2960 13 6 3.9916 1.4202 -7.3239 14 6 3.1855 1.5894 -8.4562 15 6 3.3905 2.6573 -9.2827 16 6 4.3920 3.5797 -9.0105 17 6 5.1982 3.4346 -7.9018 18 6 5.0092 2.3545 -7.0460 19 7 5.6368 1.9481 -5.8880 20 6 6.6824 2.5894 -5.2805 21 1 7.5115 2.0190 -4.8885 22 6 6.6772 3.9750 -5.1681 23 7 7.8002 4.6204 -4.9505 24 14 5.0730 4.9189 -5.3267 25 1 4.9176 5.3997 -6.7230 26 1 3.9375 4.0265 -4.9812 27 1 5.0888 6.0806 -4.4018 28 1 -1.0499 -0.0003 -0.0001 29 1 3.0095 -0.4737 0.9116 30 1 3.0088 1.0274 -0.0448 31 1 4.9498 -1.2744 -0.3450 32 1 4.9499 0.2269 -1.3013 33 1 4.4322 -2.5406 -2.4722 34 1 6.0203 -1.7368 -2.4809 35 1 3.2879 -1.7167 -5.0907 36 1 2.5480 -1.4070 -3.5016 37 1 2.8499 -0.0565 -4.6212 38 1 3.3851 -0.4139 -6.2073 39 1 2.4037 0.8773 -8.6754 40 1 2.7677 2.7855 -10.1557 41 1 4.5409 4.4188 -9.6738 42 1 5.9748 4.1570 -7.6987 43 1 7.8088 5.5903 -4.9443 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001522888745.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:46 Heat of formation + Delta-G solvation = 44.333772 kcal Electronic energy + Delta-G solvation = -27648.938333 eV Core-core repulsion = 23854.911975 eV Total energy + Delta-G solvation = -3794.026358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52139 -40.57820 -39.05398 -37.69970 -36.70395 -35.43786 -34.26351 -33.21220 -31.62421 -30.85203 -29.55293 -28.14266 -27.41174 -26.70053 -25.03359 -23.42382 -22.58977 -21.65232 -20.60567 -19.76378 -19.40197 -18.06902 -17.84672 -17.55007 -17.22054 -17.13347 -16.77874 -16.37352 -16.16507 -15.82378 -15.47331 -15.24684 -15.03225 -14.76774 -14.50231 -14.19429 -14.00221 -13.88625 -13.68548 -13.48741 -13.30191 -13.22396 -12.83094 -12.65158 -12.48476 -12.31135 -12.25083 -11.90218 -11.56942 -11.54772 -11.49890 -11.29011 -10.91302 -10.58155 -10.37104 -9.70383 -9.02966 -8.82500 -8.59440 -6.51520 0.01870 0.91484 1.07111 1.11696 1.25130 1.32808 1.50568 1.79543 1.81662 1.95767 2.31520 2.67123 2.83089 2.89469 3.17112 3.58444 3.68296 4.03638 4.05162 4.13147 4.25974 4.29334 4.32746 4.37747 4.40682 4.46470 4.56672 4.62550 4.69089 4.70200 4.83163 4.85270 5.00707 5.03319 5.03805 5.11360 5.29048 5.38880 5.59051 5.70000 5.81037 5.85053 6.00922 6.07572 6.12194 6.36494 6.42203 6.59090 6.82634 7.15903 7.25744 8.25937 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.011661 B = 0.004300 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.596186 B = 6509.662531 C = 6978.054824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.239 4.239 3 C 0.166 3.834 4 O -0.389 6.389 5 C 0.049 3.951 6 C 0.121 3.879 7 N -0.598 5.598 8 C 0.072 3.928 9 C 0.576 3.424 10 O -0.577 6.577 11 C -0.044 4.044 12 C -0.176 4.176 13 C -0.142 4.142 14 C -0.068 4.068 15 C -0.154 4.154 16 C -0.112 4.112 17 C -0.149 4.149 18 C 0.033 3.967 19 N -0.289 5.289 20 C -0.356 4.356 21 H 0.080 0.920 22 C 0.046 3.954 23 N -0.874 5.874 24 Si 0.925 3.075 25 H -0.219 1.219 26 H -0.279 1.279 27 H -0.275 1.275 28 H 0.256 0.744 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.094 0.906 32 H 0.024 0.976 33 H 0.123 0.877 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.192 0.808 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.584 -10.243 2.490 19.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.239 4.239 3 C 0.091 3.909 4 O -0.309 6.309 5 C -0.028 4.028 6 C -0.001 4.001 7 N -0.330 5.330 8 C -0.070 4.070 9 C 0.366 3.634 10 O -0.458 6.458 11 C -0.159 4.159 12 C -0.202 4.202 13 C -0.147 4.147 14 C -0.086 4.086 15 C -0.173 4.173 16 C -0.132 4.132 17 C -0.169 4.169 18 C -0.080 4.080 19 N 0.046 4.954 20 C -0.484 4.484 21 H 0.098 0.902 22 C -0.163 4.163 23 N -0.506 5.506 24 Si 0.748 3.252 25 H -0.142 1.142 26 H -0.204 1.204 27 H -0.201 1.201 28 H 0.272 0.728 29 H 0.114 0.886 30 H 0.081 0.919 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.141 0.859 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.088 0.912 38 H 0.209 0.791 39 H 0.173 0.827 40 H 0.175 0.825 41 H 0.161 0.839 42 H 0.113 0.887 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -15.663 -9.918 2.952 18.773 hybrid contribution 0.656 1.133 0.745 1.506 sum -15.008 -8.786 3.698 17.779 Atomic orbital electron populations 1.25850 0.96727 0.98192 0.96745 1.23003 0.94717 1.02744 1.03413 1.19172 0.84995 0.96699 0.90058 1.87871 1.21578 1.75098 1.46391 1.23011 0.80534 0.99667 0.99585 1.21694 1.01935 0.95245 0.81252 1.47492 1.15423 1.41597 1.28498 1.22466 0.81830 1.02770 0.99896 1.17442 0.84084 0.79310 0.82525 1.90756 1.23353 1.66437 1.65239 1.20333 0.99951 0.95471 1.00113 1.21637 1.00160 1.02786 0.95620 1.18505 0.99592 0.97068 0.99577 1.20676 0.97990 0.98368 0.91557 1.20902 0.99651 0.95227 1.01504 1.21083 0.95851 1.00669 0.95609 1.20332 1.02511 0.97174 0.96893 1.18955 0.99411 1.00083 0.89551 1.40191 1.22346 1.17511 1.15350 1.19110 0.98091 0.91251 1.39947 0.90191 1.26049 1.00359 0.96851 0.93017 1.69706 1.27703 1.10403 1.42768 0.86188 0.79173 0.78629 0.81236 1.14237 1.20364 1.20103 0.72796 0.88637 0.91868 0.88834 0.95716 0.85861 0.89085 0.89852 0.88757 0.91156 0.79100 0.82652 0.82459 0.83926 0.88658 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 19.25 74.32 1.43 -1.42 16 2 C -0.24 -5.46 13.73 31.12 0.43 -5.04 16 3 C 0.17 3.73 6.41 70.18 0.45 4.18 16 4 O -0.39 -9.96 9.32 -148.98 -1.39 -11.35 16 5 C 0.05 1.25 6.27 71.98 0.45 1.70 16 6 C 0.12 3.13 5.77 86.38 0.50 3.63 16 7 N -0.60 -19.60 2.86 -851.27 -2.43 -22.03 16 8 C 0.07 1.78 8.52 127.77 1.09 2.86 16 9 C 0.58 26.23 7.56 86.51 0.65 26.89 16 10 O -0.58 -31.20 14.78 -4.26 -0.06 -31.26 16 11 C -0.04 -2.13 6.46 39.91 0.26 -1.87 16 12 C -0.18 -6.79 8.56 22.63 0.19 -6.60 16 13 C -0.14 -5.82 6.16 -21.34 -0.13 -5.95 16 14 C -0.07 -2.11 10.06 22.31 0.22 -1.89 16 15 C -0.15 -4.53 9.97 22.03 0.22 -4.31 16 16 C -0.11 -3.93 10.02 22.32 0.22 -3.71 16 17 C -0.15 -6.77 6.77 22.38 0.15 -6.62 16 18 C 0.03 1.61 5.17 39.06 0.20 1.81 16 19 N -0.29 -15.95 2.41 -331.34 -0.80 -16.75 16 20 C -0.36 -22.12 9.37 84.09 0.79 -21.33 16 21 H 0.08 5.62 7.06 -2.91 -0.02 5.60 16 22 C 0.05 2.71 4.91 84.95 0.42 3.13 16 23 N -0.87 -52.55 13.95 21.67 0.30 -52.24 16 24 Si 0.93 46.03 24.28 68.60 1.67 47.69 16 25 H -0.22 -9.85 5.60 99.48 0.56 -9.30 16 26 H -0.28 -14.66 7.11 99.48 0.71 -13.95 16 27 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 28 H 0.26 2.23 7.80 -4.42 -0.03 2.19 16 29 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.12 2.25 8.08 -2.39 -0.02 2.23 16 34 H 0.09 2.58 7.40 -2.39 -0.02 2.56 16 35 H 0.08 1.62 7.06 -2.39 -0.02 1.60 16 36 H 0.09 1.98 7.26 -2.38 -0.02 1.96 16 37 H 0.07 1.99 5.66 -2.38 -0.01 1.97 16 38 H 0.19 5.37 4.75 -2.91 -0.01 5.36 16 39 H 0.16 3.47 8.06 -2.91 -0.02 3.45 16 40 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.14 4.03 8.06 -2.91 -0.02 4.01 16 42 H 0.10 4.66 5.82 -2.91 -0.02 4.64 16 43 H 0.29 15.87 8.31 -92.71 -0.77 15.09 16 Total: -1.00 -82.31 358.29 5.71 -76.60 By element: Atomic # 1 Polarization: 22.99 SS G_CDS: 0.88 Total: 23.87 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 7.55 Total: -14.53 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -2.93 Total: -91.02 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.45 Total: -42.61 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.67 Total: 47.69 kcal Total: -82.31 5.71 -76.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001522888745.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.931 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds